Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_J20
(1166 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084158-4|AAK68562.1| 299|Caenorhabditis elegans Hypothetical ... 293 2e-79
AC084158-3|AAL00872.1| 313|Caenorhabditis elegans Hypothetical ... 218 7e-57
AC084158-5|AAO21417.1| 200|Caenorhabditis elegans Hypothetical ... 136 4e-32
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 33 0.51
Z82089-1|CAB05002.1| 983|Caenorhabditis elegans Hypothetical pr... 32 0.68
Z81511-2|CAB04167.1| 983|Caenorhabditis elegans Hypothetical pr... 32 0.68
U46669-6|AAM51526.1| 514|Caenorhabditis elegans Hypothetical pr... 30 3.6
U46669-5|AAA85746.3| 493|Caenorhabditis elegans Hypothetical pr... 30 3.6
Z81537-3|CAB04374.1| 348|Caenorhabditis elegans Hypothetical pr... 29 4.8
U23147-7|AAC46691.1| 596|Caenorhabditis elegans Rapsyn protein ... 29 4.8
>AC084158-4|AAK68562.1| 299|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18a protein.
Length = 299
Score = 293 bits (718), Expect = 2e-79
Identities = 157/292 (53%), Positives = 201/292 (68%), Gaps = 7/292 (2%)
Frame = +2
Query: 116 GVGT-QVVA--VVSXQPNRHLAPLXAISIRLQSVQXLQQITQSXKLVSAAKXTRAERXLK 286
G GT Q+V+ + + R A L ISIRL+SV+ +Q+IT+S K+V+AAK +AER LK
Sbjct: 5 GAGTLQLVSQGFANAEQARGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELK 64
Query: 287 AARPXGXGAVQFYXR----AEVTPPEAXPKQLFVAMXSDRGLCGAVHTGVSKVIRNRLSE 454
AR G GA F+ E + KQ+ V + SDRGLCG VH+ + K +N L+
Sbjct: 65 GARAYGVGAKTFFDNIDPVVEGVEKQESKKQVLVLITSDRGLCGGVHSSIVKEAKNILNN 124
Query: 455 PGAENIKVICVGXKSRGILQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGS 634
G + I+V+ +G KSR LQRLY I+ NEIGR PP+F DAS A AIL SGY+F +
Sbjct: 125 AGDKEIRVVAIGDKSRAGLQRLYANSILLSGNEIGRAPPSFADASIAAKAILDSGYDFET 184
Query: 635 GKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVLQSYTEFSLASLLFYAL 814
G I++N+FK+VVSY S L + ++I++ L+ YDS+D DVLQSY+E+SLA L++Y +
Sbjct: 185 GTILFNRFKTVVSYETSKLQILPLEAIKAKEALSTYDSVDDDVLQSYSEYSLAQLIYYGM 244
Query: 815 KEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRXRQAVITRXLIXIISGA 970
KE A SEQSSRMTAMD ASKNAGEMIDKLTL FNR RQAVITR LI IISGA
Sbjct: 245 KESATSEQSSRMTAMDGASKNAGEMIDKLTLAFNRTRQAVITRELIEIISGA 296
>AC084158-3|AAL00872.1| 313|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18b protein.
Length = 313
Score = 218 bits (532), Expect = 7e-57
Identities = 117/247 (47%), Positives = 161/247 (65%), Gaps = 7/247 (2%)
Frame = +2
Query: 116 GVGT-QVVA--VVSXQPNRHLAPLXAISIRLQSVQXLQQITQSXKLVSAAKXTRAERXLK 286
G GT Q+V+ + + R A L ISIRL+SV+ +Q+IT+S K+V+AAK +AER LK
Sbjct: 5 GAGTLQLVSQGFANAEQARGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELK 64
Query: 287 AARPXGXGAVQFYXR----AEVTPPEAXPKQLFVAMXSDRGLCGAVHTGVSKVIRNRLSE 454
AR G GA F+ E + KQ+ V + SDRGLCG VH+ + K +N L+
Sbjct: 65 GARAYGVGAKTFFDNIDPVVEGVEKQESKKQVLVLITSDRGLCGGVHSSIVKEAKNILNN 124
Query: 455 PGAENIKVICVGXKSRGILQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGS 634
G + I+V+ +G KSR LQRLY I+ NEIGR PP+F DAS A AIL SGY+F +
Sbjct: 125 AGDKEIRVVAIGDKSRAGLQRLYANSILLSGNEIGRAPPSFADASIAAKAILDSGYDFET 184
Query: 635 GKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVLQSYTEFSLASLLFYAL 814
G I++N+FK+VVSY S L + ++I++ L+ YDS+D DVLQSY+E+SLA L++Y +
Sbjct: 185 GTILFNRFKTVVSYETSKLQILPLEAIKAKEALSTYDSVDDDVLQSYSEYSLAQLIYYGM 244
Query: 815 KEGACSE 835
KE A SE
Sbjct: 245 KESATSE 251
>AC084158-5|AAO21417.1| 200|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18c protein.
Length = 200
Score = 136 bits (328), Expect = 4e-32
Identities = 79/172 (45%), Positives = 105/172 (61%), Gaps = 7/172 (4%)
Frame = +2
Query: 116 GVGT-QVVA--VVSXQPNRHLAPLXAISIRLQSVQXLQQITQSXKLVSAAKXTRAERXLK 286
G GT Q+V+ + + R A L ISIRL+SV+ +Q+IT+S K+V+AAK +AER LK
Sbjct: 5 GAGTLQLVSQGFANAEQARGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELK 64
Query: 287 AARPXGXGAVQFYXR----AEVTPPEAXPKQLFVAMXSDRGLCGAVHTGVSKVIRNRLSE 454
AR G GA F+ E + KQ+ V + SDRGLCG VH+ + K +N L+
Sbjct: 65 GARAYGVGAKTFFDNIDPVVEGVEKQESKKQVLVLITSDRGLCGGVHSSIVKEAKNILNN 124
Query: 455 PGAENIKVICVGXKSRGILQRLYGKHIISVANEIGRLPPTFLDASQLATAIL 610
G + I+V+ +G KSR LQRLY I+ NEIGR PP+F DAS A AIL
Sbjct: 125 AGDKEIRVVAIGDKSRAGLQRLYANSILLSGNEIGRAPPSFADASIAAKAIL 176
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 32.7 bits (71), Expect = 0.51
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +3
Query: 669 YRTPSPTCPSTLRSLLRAPAS*RHTT--LWTATYSNPTRSSRWPRCCSTR*RRALAQSSR 842
Y PS T + + P + R TT + T T + PT PR + R LA +SR
Sbjct: 252 YVAPSTTTQRYIEPTTQRPTTRRATTKRITTTTTAAPTT----PRLTTARATTPLATTSR 307
Query: 843 PA*PPWTTPQRT 878
P P TTP+ T
Sbjct: 308 PTTPSPTTPRAT 319
>Z82089-1|CAB05002.1| 983|Caenorhabditis elegans Hypothetical
protein ZK270.1 protein.
Length = 983
Score = 32.3 bits (70), Expect = 0.68
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 608 LTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKL-TAYDSLDSDVLQSYTEF 784
+ GYEFGS +I N+ + ++ + ++ + + SK A + SD LQ YT
Sbjct: 482 IVGGYEFGSDEIDKNRMEINIAENRVNIARHHRPLTRQPSKFHEATQPIISDSLQKYTHL 541
Query: 785 SLASLLFYAL 814
L+F ++
Sbjct: 542 MTTPLVFVSV 551
>Z81511-2|CAB04167.1| 983|Caenorhabditis elegans Hypothetical
protein ZK270.1 protein.
Length = 983
Score = 32.3 bits (70), Expect = 0.68
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 608 LTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKL-TAYDSLDSDVLQSYTEF 784
+ GYEFGS +I N+ + ++ + ++ + + SK A + SD LQ YT
Sbjct: 482 IVGGYEFGSDEIDKNRMEINIAENRVNIARHHRPLTRQPSKFHEATQPIISDSLQKYTHL 541
Query: 785 SLASLLFYAL 814
L+F ++
Sbjct: 542 MTTPLVFVSV 551
>U46669-6|AAM51526.1| 514|Caenorhabditis elegans Hypothetical
protein C41G11.4b protein.
Length = 514
Score = 29.9 bits (64), Expect = 3.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 720 APAS*RHTTLWTATYSNPTRSSRW 791
APAS R TLW T R++RW
Sbjct: 440 APASARSNTLWVVTVDTARRNARW 463
>U46669-5|AAA85746.3| 493|Caenorhabditis elegans Hypothetical
protein C41G11.4a protein.
Length = 493
Score = 29.9 bits (64), Expect = 3.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 720 APAS*RHTTLWTATYSNPTRSSRW 791
APAS R TLW T R++RW
Sbjct: 419 APASARSNTLWVVTVDTARRNARW 442
>Z81537-3|CAB04374.1| 348|Caenorhabditis elegans Hypothetical
protein F41D3.3 protein.
Length = 348
Score = 29.5 bits (63), Expect = 4.8
Identities = 20/88 (22%), Positives = 42/88 (47%)
Frame = -2
Query: 595 QLTCVQESRWETSNLISNTNDVLSVQSLQDTARFXSHTDHLDVLSTRFAETVADHFRYTS 416
Q+ V++ R++ + I + N+++++Q + H +D+L A+ + HF++
Sbjct: 146 QVESVEKQRFKNALQIQSVNELVTLQRTSTDSCL--HCPGVDILDRESAQALRKHFQFAD 203
Query: 415 VYSSAQTSVRGHSNKQLLGXSFGRCNLS 332
V+ S S L + GR NL+
Sbjct: 204 VWLD---SAWEFSKSPELLFALGRSNLN 228
>U23147-7|AAC46691.1| 596|Caenorhabditis elegans Rapsyn protein 1
protein.
Length = 596
Score = 29.5 bits (63), Expect = 4.8
Identities = 26/64 (40%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +3
Query: 678 PSPTCPSTLRSLLRAPAS*RHTTLWTATYSN----PTRSSRWPRCCSTR*RRALAQSSRP 845
PSP PST S P TT + T+SN P R P CCS + AL SS
Sbjct: 516 PSPEVPSTTASCASEPILTASTTSQSHTHSNANHKPPPPPRKP-CCS---QAALPPSSIV 571
Query: 846 A*PP 857
A PP
Sbjct: 572 ALPP 575
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,527,412
Number of Sequences: 27780
Number of extensions: 387009
Number of successful extensions: 1040
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3182509690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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