Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_J18
         (1155 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0490 + 22672241-22674679                                         31   1.3  
03_05_0843 + 28126480-28127007,28127092-28127457,28129388-281294...    30   4.0  
03_06_0422 + 33818887-33819996                                         29   5.3  
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678...    29   7.0  
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535...    29   9.2  
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247     29   9.2  

>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 255 RPHRSLRTLTLLPNSLVLVQRQWE*LVPELVLEQSSAPSSSAMPGTPP 398
           +P + + T+T  P  L    R+W   + E+VLEQ S    + MP  PP
Sbjct: 296 QPQQPVETVTPTPPPLAR-SRRWNPEMLEVVLEQESRVEETTMPPPPP 342


>03_05_0843 +
           28126480-28127007,28127092-28127457,28129388-28129487,
           28130266-28130546,28130643-28130705,28131276-28131431,
           28131913-28132080,28132158-28132298,28132714-28132840,
           28132888-28132994,28134142-28134372,28134446-28134559,
           28135091-28135261
          Length = 850

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 107 CCLPPVLIAPAARSAIFCNSALVRPLAAVP 196
           CC+PPV ++PAA +A     A    +A  P
Sbjct: 5   CCVPPVPVSPAASAAAAATPAASSAVAGAP 34


>03_06_0422 + 33818887-33819996
          Length = 369

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = -3

Query: 499 ESEEQQERHHKTEQTHGLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 329
           E   ++ER  + E+T  L    + N   E ++L+G       D+  +D SNTSSG S
Sbjct: 156 ERMRERERERRRERTESLILINSNN---EAIILQGT---FGPDDNQDDSSNTSSGVS 206


>03_02_0994 -
           13067254-13067379,13067483-13067521,13067824-13067893,
           13068025-13068116,13068237-13068319,13068590-13068633,
           13068682-13068800,13068883-13068915,13069152-13069239,
           13069364-13069413
          Length = 247

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 127 DRPCSQVCHLLQLCTGAXTCSCTHPYTDGTCCPYTALC 240
           ++P +QVC+   +C G   CS    + D   C    LC
Sbjct: 55  EQPVAQVCYNCGVCMGEYFCSACKFFDDDVRCRCCLLC 92


>11_08_0007 +
           27551173-27551828,27552071-27552282,27553371-27553550,
           27555154-27556187
          Length = 693

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
 Frame = -3

Query: 355 CSNTSSGTSYSHCRCT---STNEF--GSRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGY 191
           C N ++G  Y  C C+   S N +  G  +N+       EGP        SR +   GGY
Sbjct: 261 CVNATNGKGYL-CNCSAGYSGNPYVTGGCININECELRREGPAMYPCYSGSRCYDTEGGY 319

Query: 190 SCK 182
            CK
Sbjct: 320 KCK 322


>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
          Length = 974

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
 Frame = -3

Query: 547 LICRMAVVVFLKVNSLESEEQQERHHKTEQTHGLRQGETQNGV*EQLLLEGGVPGIADDE 368
           L C + +   +   +  ++       +T   +   Q  T NG  E L   GG   ++ + 
Sbjct: 331 LACIIVLKAIISCQTYSNDRSNNVEEQTSTGNCRAQINTSNGGAESLSSNGGAESVSSNG 390

Query: 367 GAEDCSNTSSG--TSYSHCRCTSTNEFGSRVN 278
           GAE  S+ +    T+ +    T T+  G++ N
Sbjct: 391 GAESVSSNARAQPTTTNGGEETKTSNAGAQKN 422


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,401,074
Number of Sequences: 37544
Number of extensions: 568318
Number of successful extensions: 1620
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1619
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3514835996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)