Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_J18
(1155 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase su... 77 3e-14
D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase su... 77 3e-14
AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical... 77 3e-14
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 30 3.6
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 30 3.6
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 29 6.2
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 29 6.2
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 29 6.2
Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical p... 29 8.2
>D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 76.6 bits (180), Expect = 3e-14
Identities = 40/70 (57%), Positives = 43/70 (61%)
Frame = +2
Query: 239 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 418
A R TT KDIDSAAK+ FG+L+IGYARNPSLKQQLFS
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65
Query: 419 YAILGFALSE 448
YAILGFALSE
Sbjct: 66 YAILGFALSE 75
>D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 76.6 bits (180), Expect = 3e-14
Identities = 40/70 (57%), Positives = 43/70 (61%)
Frame = +2
Query: 239 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 418
A R TT KDIDSAAK+ FG+L+IGYARNPSLKQQLFS
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65
Query: 419 YAILGFALSE 448
YAILGFALSE
Sbjct: 66 YAILGFALSE 75
>AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical
protein Y82E9BR.3 protein.
Length = 116
Score = 76.6 bits (180), Expect = 3e-14
Identities = 40/70 (57%), Positives = 43/70 (61%)
Frame = +2
Query: 239 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 418
A R TT KDIDSAAK+ FG+L+IGYARNPSLKQQLFS
Sbjct: 30 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 89
Query: 419 YAILGFALSE 448
YAILGFALSE
Sbjct: 90 YAILGFALSE 99
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 29.9 bits (64), Expect = 3.6
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Frame = -3
Query: 385 GIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRYH 209
G D+ + CS S G + S C C + + G GP C E CR RY
Sbjct: 1534 GFQGDKCEQKCSEGSFGPACSQQCNCGKYKCDATDGKCICP-VGRHGPLCEEECRPGRY- 1591
Query: 208 LCMGGYSCKWXHQC 167
G SC+ QC
Sbjct: 1592 ----GQSCQNKCQC 1601
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 29.9 bits (64), Expect = 3.6
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Frame = -3
Query: 385 GIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRYH 209
G D+ + CS S G + S C C + + G GP C E CR RY
Sbjct: 1534 GFQGDKCEQKCSEGSFGPACSQQCNCGKYKCDATDGKCICP-VGRHGPLCEEECRPGRY- 1591
Query: 208 LCMGGYSCKWXHQC 167
G SC+ QC
Sbjct: 1592 ----GQSCQNKCQC 1601
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +1
Query: 136 CSQVCHLLQLCTGAXTCSCTHPYTDGTCCPYTALCSAVLPD 258
CS V H + G TC C Y DG +C A+L D
Sbjct: 2755 CSGVAHCIDRAVG-YTCKCPDGYIDGNPDEPGRVCGALLCD 2794
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +1
Query: 136 CSQVCHLLQLCTGAXTCSCTHPYTDGTCCPYTALCSAVLPD 258
CS V H + G TC C Y DG +C A+L D
Sbjct: 3339 CSGVAHCIDRAVG-YTCKCPDGYIDGNPDEPGRVCGALLCD 3378
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +1
Query: 136 CSQVCHLLQLCTGAXTCSCTHPYTDGTCCPYTALCSAVLPD 258
CS V H + G TC C Y DG +C A+L D
Sbjct: 2755 CSGVAHCIDRAVG-YTCKCPDGYIDGNPDEPGRVCGALLCD 2794
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +1
Query: 136 CSQVCHLLQLCTGAXTCSCTHPYTDGTCCPYTALCSAVLPD 258
CS V H + G TC C Y DG +C A+L D
Sbjct: 3339 CSGVAHCIDRAVG-YTCKCPDGYIDGNPDEPGRVCGALLCD 3378
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +1
Query: 136 CSQVCHLLQLCTGAXTCSCTHPYTDGTCCPYTALCSAVLPD 258
CS V H + G TC C Y DG +C A+L D
Sbjct: 3339 CSGVAHCIDRAVG-YTCKCPDGYIDGNPDEPGRVCGALLCD 3378
>Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical
protein C54D10.6 protein.
Length = 348
Score = 28.7 bits (61), Expect = 8.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 536 PTYEVSVYTIWSGQPWNRMFGNLTLIVMQ 622
P + VSVY I PWN +F ++V Q
Sbjct: 29 PLFLVSVYCILKKSPWNMVFYKWLILVFQ 57
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,228,771
Number of Sequences: 27780
Number of extensions: 487355
Number of successful extensions: 1584
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1579
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3140771858
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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