Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_J17
(1180 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 31 0.31
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 29 1.7
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 29 1.7
SPAC17A2.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 2.2
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 28 2.9
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 28 2.9
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 28 2.9
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 27 6.7
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M... 27 6.7
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 26 8.8
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 31.1 bits (67), Expect = 0.31
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Frame = -1
Query: 982 RAPTC-STDISTSRHSAAINAKVSFPAGXPHATATPNKAVEAASIPRSRPTSRTCTQRAV 806
RAP+ + + S ++HS ++ V P P + TP+ A+ SIP S T+ + + ++
Sbjct: 543 RAPSQQNNNNSNTQHSINLHTIVPSPYEPP-LSVTPSTAITNLSIPESNRTNSSASSKS- 600
Query: 805 LGDDARYSNRSLHSCPIRCRKPTRVNQEHHSITSS 701
++ L P+ + T+ N H SS
Sbjct: 601 ------FTMNDLILPPLHLKNTTQTNNAHEDAQSS 629
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -3
Query: 671 EDEFVEDIVPELVLDALSLRDPELTEDDALDQETEDGEEAVRYV 540
EDE E + + + + L+D LTE+D + + T++ E Y+
Sbjct: 235 EDELEESVSLKTIFEPSELKDKMLTEEDEIIRITDEPERMQLYM 278
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 28.7 bits (61), Expect = 1.7
Identities = 15/66 (22%), Positives = 33/66 (50%)
Frame = +3
Query: 447 LNLNATRNLNERMVVIITFMMQEPLCMWTLINIAYCFLAVFGFLIQRVVFGQLRVSEAQR 626
L+L ++ N+ V+I Q P+ + +N+ C ++ ++FG L+ E +
Sbjct: 20 LSLYSSANVYSATVMI----SQSPVHITIGLNVCLCLFFAIANALKTLLFGSLQTFELEL 75
Query: 627 VKDKFW 644
+ ++FW
Sbjct: 76 LYEQFW 81
>SPAC17A2.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 177
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -3
Query: 611 DPELTEDDALDQETEDGEEAVR 546
D EL EDD++++ TE+ +EA R
Sbjct: 66 DAELEEDDSINKPTEEADEAPR 87
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 27.9 bits (59), Expect = 2.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 910 PAGXPHATATPNKAVEAASIPRSRPTSRT 824
P+ H+ ATP ++VEA ++P P T
Sbjct: 480 PSADDHSRATPTRSVEAPTLPSYAPRHPT 508
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 517 GSCIMKVIITTMRSFKFLVAFRFSAGITSAWST 419
G C+ V + T+ F +L+A FS +TSA +T
Sbjct: 598 GICMFIVAVITLFIFLYLIARNFSGVLTSAGTT 630
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 27.9 bits (59), Expect = 2.9
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 692 NVDYSEDEDEFVEDIVPELVLDALSLRDPELTEDDALD 579
N DYSE++DEF + + L R +++E DA+D
Sbjct: 129 NEDYSEEDDEFDARMEEQEALRLQRKRLEKVSETDAID 166
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 608 PELTEDDALDQETEDGEEAVR 546
PE+ E++ LDQE +D EA R
Sbjct: 346 PEMDEEERLDQELQDLSEAER 366
>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 26.6 bits (56), Expect = 6.7
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +3
Query: 453 LNATRNLNERMVVIITF--MMQEPLCMWTLINIAYCFLAVFGFLIQRVVFGQL 605
L A NL + V I T ++E C W++ N+ L+V I VFG +
Sbjct: 27 LRAYVNLEDWDVFIHTLNEKLREAFCPWSIGNLLDGILSVLTIYISEFVFGSI 79
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 26.2 bits (55), Expect = 8.8
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 668 DEFVEDIVPELVLDALSLRDPELTEDDALDQETE 567
+ +ED +LV++ +++ DP TE +A E E
Sbjct: 866 ESVLEDYPAQLVVEKIAIDDPRFTEREAPPVEVE 899
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,650,055
Number of Sequences: 5004
Number of extensions: 68558
Number of successful extensions: 234
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 633513876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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