Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_J17
         (1180 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0066 - 11081446-11081544,11081639-11081846,11083122-110832...    50   5e-06
01_06_0249 + 27868897-27871599                                         33   0.58 
01_01_1162 - 9253034-9254229,9254387-9254456,9254473-9254567,925...    30   4.1  
01_01_0606 - 4503620-4504060                                           30   4.1  
06_01_0638 + 4640218-4640808                                           29   5.4  
07_03_0698 - 20765305-20768526                                         29   7.1  

>06_02_0066 -
           11081446-11081544,11081639-11081846,11083122-11083257,
           11083339-11083541,11083616-11083765,11083848-11083964,
           11084623-11085119
          Length = 469

 Score = 49.6 bits (113), Expect = 5e-06
 Identities = 29/127 (22%), Positives = 58/127 (45%)
 Frame = +3

Query: 477 ERMVVIITFMMQEPLCMWTLINIAYCFLAVFGFLIQRVVFGQLRVSEAQRVKDKFWNYVF 656
           E+    + ++    +C   L+N     + V   L++R+  G LR +E +R+ ++ W  V 
Sbjct: 15  EQFYPAMVYLSTSKICFVLLLNTGLVAMCVAWQLVKRLFLGTLREAEVERLNEQAWREVV 74

Query: 657 YKFIFIFGVINVQYMDEVMLWCSWFTLVGFLHLMGQLCKDRFEYLASSPNTARWVHVRLV 836
            + +F   +    +    +   +   LV  LH + Q    R EY+ ++P+     H R+V
Sbjct: 75  -EILFAVTIFRQDFSVSFLAMVAALLLVKALHWLAQ---KRVEYIETTPSVPMLSHARIV 130

Query: 837 GLLLGIL 857
             +L +L
Sbjct: 131 SFMLFLL 137


>01_06_0249 + 27868897-27871599
          Length = 900

 Score = 32.7 bits (71), Expect = 0.58
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = +3

Query: 492 IITFMMQEPLCMWTLINIAYCFLAVFGFLIQRVVFGQLRVSEAQRVKDKFW 644
           ++  + QEP  +W  + ++Y  L + GFL+ +++F +L  S  Q +   F+
Sbjct: 765 VVVRISQEPATIWEDL-VSYAGLILDGFLLPQIIFNRLSGSRVQAISPWFY 814


>01_01_1162 - 9253034-9254229,9254387-9254456,9254473-9254567,
            9255344-9255487,9255514-9255622
          Length = 537

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = -1

Query: 1039 VLXQAXAPAXSAPRXCST*RAPTCSTDISTSRHSAAINAKVSFPAGXPHATATPNKAVEA 860
            +L  A A A +AP    T R P            +A +  ++ P   P AT T    + A
Sbjct: 185  LLATAVAAAAAAPFPAPTRRPPPPPPPPPRCPGGSAADRHMTQPPRRPDATETTTAFLGA 244

Query: 859  ASIPRSRPTSRT 824
            AS P  RP   T
Sbjct: 245  ASTPSPRPAPAT 256


>01_01_0606 - 4503620-4504060
          Length = 146

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = -1

Query: 982 RAPTCSTDISTSRHSAAINAKVSFPAGXPHATATPNKAVEAASIPRSRPTSRTCTQR 812
           RAP  +T   T        A    P G   A A   K + AAS+P + PT  + T+R
Sbjct: 49  RAPPGTTPTPTPARKRTAAAS---PLGATPAPAPERKGMSAASLPGATPTPTSATER 102


>06_01_0638 + 4640218-4640808
          Length = 196

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = -1

Query: 982 RAPTCSTDISTSRHSAAINAKVSFPAGXPHATATPNKAVEAASIPRSRPTSRTCTQR 812
           RAP  +T + T        A    P G   A A   K + AAS+P + PT    T+R
Sbjct: 49  RAPPGTTPMPTLARKRTATAS---PLGATPAPAPERKGMAAASLPGATPTLTPATER 102


>07_03_0698 - 20765305-20768526
          Length = 1073

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 775 SLHSCPIRCRKPTRVNQEHH 716
           SLH C IR R P R+ + HH
Sbjct: 920 SLHICSIRSRLPPRIKELHH 939


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,560,714
Number of Sequences: 37544
Number of extensions: 546257
Number of successful extensions: 1708
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1705
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3608253564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)