Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_J17
         (1180 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.74 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   1.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   1.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    25   1.7  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   9.1  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.8 bits (54), Expect = 0.74
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -2

Query: 849 PGVDRPVEHAPNVLCWATTLDIQIDPCTAAPSGAGSRRE*TKNTTASPRPCTER 688
           P +DR   H  + L  ++     IDPC +   G G   E + N+T +   C  +
Sbjct: 59  PSIDRSSIHEESYLAESSR---SIDPCASKYCGIGKECELSPNSTIAVCVCMRK 109


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 729 FTLVGFLHLMGQLCKDRFEYLASSPNTAR 815
           +  VG++    Q+ K+RF+ +A S  TAR
Sbjct: 301 YATVGYMAKRIQMRKNRFQKIAESMKTAR 329


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 729 FTLVGFLHLMGQLCKDRFEYLASSPNTAR 815
           +  VG++    Q+ K+RF+ +A S  TAR
Sbjct: 301 YATVGYMAKRIQMRKNRFQKIAESMKTAR 329


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 729 FTLVGFLHLMGQLCKDRFEYLASSPNTAR 815
           +  VG++    Q+ K+RF+ +A S  TAR
Sbjct: 240 YATVGYMAKRIQMRKNRFQKIAESMKTAR 268


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -2

Query: 882 RPIRQWRRPVYPGVDRPVEHAPNVLCWATTL 790
           RP   W    YP       + P+  C ATT+
Sbjct: 208 RPAANWGYYAYPYCYNLTPNQPSAQCEATTM 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,498
Number of Sequences: 438
Number of extensions: 4826
Number of successful extensions: 25
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40126833
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)