Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_J13
(1196 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR533490-1|CAG38521.1| 186|Homo sapiens NDUFB8 protein. 73 3e-12
BC019276-1|AAH19276.1| 186|Homo sapiens NADH dehydrogenase (ubi... 73 3e-12
BC000466-1|AAH00466.1| 186|Homo sapiens NADH dehydrogenase (ubi... 73 3e-12
AL133352-3|CAH73563.1| 186|Homo sapiens NADH dehydrogenase (ubi... 73 3e-12
AL133352-2|CAH73562.1| 155|Homo sapiens NADH dehydrogenase (ubi... 73 3e-12
AF115968-1|AAP97239.1| 186|Homo sapiens NADH:ubiquinone oxidore... 73 3e-12
AF044958-1|AAD05422.1| 186|Homo sapiens NADH:ubiquinone oxidore... 73 3e-12
AL133352-4|CAH73564.1| 172|Homo sapiens NADH dehydrogenase (ubi... 67 1e-10
>CR533490-1|CAG38521.1| 186|Homo sapiens NDUFB8 protein.
Length = 186
Score = 72.5 bits (170), Expect = 3e-12
Identities = 42/115 (36%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Frame = +2
Query: 206 KKSGMXVAXYTPXPE-AMGYGXYPKLPDIGXDSKDPHYPYDNPELKXNFNEPLHATAEIF 382
KK M V Y P P+ MGYG YPKLPD +DP Y +D P L+ N+ EP+H +++
Sbjct: 53 KKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQHERDPWYSWDQPGLRLNWGEPMHWHLDMY 112
Query: 383 GGDRCDISIRRRFSLLHQWTWFLGTLGGFALLMVFL----EDYKIGRPVTAKQIP 535
+R D S W L GF M+F+ + Y + +PV KQ P
Sbjct: 113 NRNRVDTS-----PTPVSWHVMCMQLFGFLAFMIFMCWVGDVYPVYQPVGPKQYP 162
>BC019276-1|AAH19276.1| 186|Homo sapiens NADH dehydrogenase
(ubiquinone) 1 beta subcomplex, 8, 19kDa protein.
Length = 186
Score = 72.5 bits (170), Expect = 3e-12
Identities = 42/115 (36%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Frame = +2
Query: 206 KKSGMXVAXYTPXPE-AMGYGXYPKLPDIGXDSKDPHYPYDNPELKXNFNEPLHATAEIF 382
KK M V Y P P+ MGYG YPKLPD +DP Y +D P L+ N+ EP+H +++
Sbjct: 53 KKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQHERDPWYSWDQPGLRLNWGEPMHWHLDMY 112
Query: 383 GGDRCDISIRRRFSLLHQWTWFLGTLGGFALLMVFL----EDYKIGRPVTAKQIP 535
+R D S W L GF M+F+ + Y + +PV KQ P
Sbjct: 113 NRNRVDTS-----PTPVSWHVMCMQLFGFLAFMIFMCWVGDVYPVYQPVGPKQYP 162
>BC000466-1|AAH00466.1| 186|Homo sapiens NADH dehydrogenase
(ubiquinone) 1 beta subcomplex, 8, 19kDa protein.
Length = 186
Score = 72.5 bits (170), Expect = 3e-12
Identities = 42/115 (36%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Frame = +2
Query: 206 KKSGMXVAXYTPXPE-AMGYGXYPKLPDIGXDSKDPHYPYDNPELKXNFNEPLHATAEIF 382
KK M V Y P P+ MGYG YPKLPD +DP Y +D P L+ N+ EP+H +++
Sbjct: 53 KKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQHERDPWYSWDQPGLRLNWGEPMHWHLDMY 112
Query: 383 GGDRCDISIRRRFSLLHQWTWFLGTLGGFALLMVFL----EDYKIGRPVTAKQIP 535
+R D S W L GF M+F+ + Y + +PV KQ P
Sbjct: 113 NRNRVDTS-----PTPVSWHVMCMQLFGFLAFMIFMCWVGDVYPVYQPVGPKQYP 162
>AL133352-3|CAH73563.1| 186|Homo sapiens NADH dehydrogenase
(ubiquinone) 1 beta subcomplex, 8, 19kDa protein.
Length = 186
Score = 72.5 bits (170), Expect = 3e-12
Identities = 42/115 (36%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Frame = +2
Query: 206 KKSGMXVAXYTPXPE-AMGYGXYPKLPDIGXDSKDPHYPYDNPELKXNFNEPLHATAEIF 382
KK M V Y P P+ MGYG YPKLPD +DP Y +D P L+ N+ EP+H +++
Sbjct: 53 KKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQHERDPWYSWDQPGLRLNWGEPMHWHLDMY 112
Query: 383 GGDRCDISIRRRFSLLHQWTWFLGTLGGFALLMVFL----EDYKIGRPVTAKQIP 535
+R D S W L GF M+F+ + Y + +PV KQ P
Sbjct: 113 NRNRVDTS-----PTPVSWHVMCMQLFGFLAFMIFMCWVGDVYPVYQPVGPKQYP 162
>AL133352-2|CAH73562.1| 155|Homo sapiens NADH dehydrogenase
(ubiquinone) 1 beta subcomplex, 8, 19kDa protein.
Length = 155
Score = 72.5 bits (170), Expect = 3e-12
Identities = 42/115 (36%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Frame = +2
Query: 206 KKSGMXVAXYTPXPE-AMGYGXYPKLPDIGXDSKDPHYPYDNPELKXNFNEPLHATAEIF 382
KK M V Y P P+ MGYG YPKLPD +DP Y +D P L+ N+ EP+H +++
Sbjct: 22 KKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQHERDPWYSWDQPGLRLNWGEPMHWHLDMY 81
Query: 383 GGDRCDISIRRRFSLLHQWTWFLGTLGGFALLMVFL----EDYKIGRPVTAKQIP 535
+R D S W L GF M+F+ + Y + +PV KQ P
Sbjct: 82 NRNRVDTS-----PTPVSWHVMCMQLFGFLAFMIFMCWVGDVYPVYQPVGPKQYP 131
>AF115968-1|AAP97239.1| 186|Homo sapiens NADH:ubiquinone
oxidoreductase ASHI subunit protein.
Length = 186
Score = 72.5 bits (170), Expect = 3e-12
Identities = 42/115 (36%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Frame = +2
Query: 206 KKSGMXVAXYTPXPE-AMGYGXYPKLPDIGXDSKDPHYPYDNPELKXNFNEPLHATAEIF 382
KK M V Y P P+ MGYG YPKLPD +DP Y +D P L+ N+ EP+H +++
Sbjct: 53 KKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQHERDPWYSWDQPGLRLNWGEPMHWHLDMY 112
Query: 383 GGDRCDISIRRRFSLLHQWTWFLGTLGGFALLMVFL----EDYKIGRPVTAKQIP 535
+R D S W L GF M+F+ + Y + +PV KQ P
Sbjct: 113 NRNRVDTS-----PTPVSWHVMCMQLFGFLAFMIFMCWVGDVYPVYQPVGPKQYP 162
>AF044958-1|AAD05422.1| 186|Homo sapiens NADH:ubiquinone
oxidoreductase ASHI subunit protein.
Length = 186
Score = 72.5 bits (170), Expect = 3e-12
Identities = 42/115 (36%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Frame = +2
Query: 206 KKSGMXVAXYTPXPE-AMGYGXYPKLPDIGXDSKDPHYPYDNPELKXNFNEPLHATAEIF 382
KK M V Y P P+ MGYG YPKLPD +DP Y +D P L+ N+ EP+H +++
Sbjct: 53 KKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQHERDPWYSWDQPGLRLNWGEPMHWHLDMY 112
Query: 383 GGDRCDISIRRRFSLLHQWTWFLGTLGGFALLMVFL----EDYKIGRPVTAKQIP 535
+R D S W L GF M+F+ + Y + +PV KQ P
Sbjct: 113 NRNRVDTS-----PTPVSWHVMCMQLFGFLAFMIFMCWVGDVYPVYQPVGPKQYP 162
>AL133352-4|CAH73564.1| 172|Homo sapiens NADH dehydrogenase
(ubiquinone) 1 beta subcomplex, 8, 19kDa protein.
Length = 172
Score = 67.3 bits (157), Expect = 1e-10
Identities = 36/96 (37%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = +2
Query: 206 KKSGMXVAXYTPXPE-AMGYGXYPKLPDIGXDSKDPHYPYDNPELKXNFNEPLHATAEIF 382
KK M V Y P P+ MGYG YPKLPD +DP Y +D P L+ N+ EP+H +++
Sbjct: 53 KKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQHERDPWYSWDQPGLRLNWGEPMHWHLDMY 112
Query: 383 GGDRCDISIRRRFSLLHQWTWFLGTLGGFALLMVFL 490
+R D S W L GF M+F+
Sbjct: 113 NRNRVDTS-----PTPVSWHVMCMQLFGFLAFMIFM 143
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,763,825
Number of Sequences: 237096
Number of extensions: 1967900
Number of successful extensions: 4120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4066
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 16844146380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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