Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_J12
         (1215 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    24   2.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   6.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   6.9  

>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 713

 Score = 24.2 bits (50), Expect(2) = 2.4
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = -1

Query: 1110 PPPPPPXXXFFXPXXXXPXXEKXFFF 1033
            PPPPPP           P  +K + F
Sbjct: 371  PPPPPPPELLNHSPKSRPLGDKPYLF 396



 Score = 22.2 bits (45), Expect(2) = 2.4
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -1

Query: 1116 WAPPPPPP 1093
            ++PPPPPP
Sbjct: 368  YSPPPPPP 375


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +3

Query: 795 PPKKXPPAXPXXKXXXXKKNPPPPP 869
           PP   PP  P        + PPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 1140 PPPXXXFXWAPPPPPP 1093
            PPP       PPPPPP
Sbjct: 752  PPPAPIMGGPPPPPPP 767


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.145    0.469 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,923,208
Number of Sequences: 5004
Number of extensions: 23814
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 657420060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)