Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_J12
         (1215 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    33   0.31 
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    33   0.31 
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    31   2.2  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    31   2.2  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    31   2.2  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    31   2.2  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    31   2.2  
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z70284-9|CAA94280.1|  290|Caenorhabditis elegans Hypothetical pr...    30   3.8  
U64609-1|AAB04598.1|  405|Caenorhabditis elegans Sperm-specific ...    30   3.8  
AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    29   5.0  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    29   5.0  

>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical
           protein C31C9.6 protein.
          Length = 965

 Score = 33.5 bits (73), Expect = 0.31
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 765 PPXXKKXXXXPPKKXPPAXPXXKXXXXKKNPPPPP 869
           PP   K    PP + P   P  +     K+PPPPP
Sbjct: 459 PPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPP 493


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 33.5 bits (73), Expect = 0.31
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 765 PPXXKKXXXXPPKKXPPAXPXXKXXXXKKNPPPPP 869
           PP   K    PP + P   P  +     K+PPPPP
Sbjct: 466 PPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPP 500


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 20/60 (33%), Positives = 23/60 (38%)
 Frame = -2

Query: 416 PXXXFFFFPPLXXXXPPPXPPFXXKXPFFFXLFFXXFPPPXXFFFFXXXPXPPXWGGXPP 237
           P   FF  PP+     PP PP     P    +F    PPP         P PP +G  PP
Sbjct: 59  PKPSFFIPPPVPNGFIPP-PPGPGGIPPPPPMFAGGIPPPPP-MMGGIPPPPPMFGAPPP 116



 Score = 31.5 bits (68), Expect = 1.2
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -1

Query: 1146 GXPPPXXXFXWAPPPPPPXXXFFXPXXXXP 1057
            G PPP   F   PPPPPP      P    P
Sbjct: 103  GIPPPPPMFGAPPPPPPPSGLGVAPQPPRP 132


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical protein
            C08B11.5 protein.
          Length = 388

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 1140 PPPXXXFXWAPPPPPP 1093
            PPP     W PPPPPP
Sbjct: 288  PPPPSSGMWPPPPPPP 303


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoformb protein.
          Length = 1437

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 1140 PPPXXXFXWAPPPPPPXXXF 1081
            PPP   F   PPPPPP   F
Sbjct: 774  PPPPGGFKGGPPPPPPPGMF 793


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoforma protein.
          Length = 1435

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 1140 PPPXXXFXWAPPPPPPXXXF 1081
            PPP   F   PPPPPP   F
Sbjct: 774  PPPPGGFKGGPPPPPPPGMF 793


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA binding
            protein protein.
          Length = 398

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 1140 PPPXXXFXWAPPPPPP 1093
            PPP     W PPPPPP
Sbjct: 298  PPPPSSGMWPPPPPPP 313


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 1140 PPPXXXFXWAPPPPPPXXXF 1081
            PPP   F   PPPPPP   F
Sbjct: 357  PPPPGGFKGGPPPPPPPGMF 376


>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical protein
            F15B9.4 protein.
          Length = 1140

 Score = 26.2 bits (55), Expect(2) = 3.2
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 1140 PPPXXXFXWAPPPPPP 1093
            PPP       PPPPPP
Sbjct: 541  PPPVGMANGGPPPPPP 556



 Score = 22.2 bits (45), Expect(2) = 3.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 1110 PPPPPPXXXF 1081
            PPPPPP   F
Sbjct: 578  PPPPPPPPSF 587


>Z70284-9|CAA94280.1|  290|Caenorhabditis elegans Hypothetical protein
            K07F5.11 protein.
          Length = 290

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = +2

Query: 1094 GGGGGGAQXXXXXGGGXPXXXKKKKXXXXXPPP 1192
            GGGGGGAQ      GG P            PPP
Sbjct: 57   GGGGGGAQSAYFAVGGAPVGGAPAAVPMGAPPP 89


>U64609-1|AAB04598.1|  405|Caenorhabditis elegans Sperm-specific
            family, class qprotein 2 protein.
          Length = 405

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = +2

Query: 1094 GGGGGGAQXXXXXGGGXPXXXKKKKXXXXXPPP 1192
            GGGGGGAQ      GG P            PPP
Sbjct: 56   GGGGGGAQSAYFAVGGAPVGGAPAAVSIGAPPP 88


>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 22/69 (31%), Positives = 23/69 (33%), Gaps = 9/69 (13%)
 Frame = -2

Query: 416 PXXXFFFFPPLXXXXPPP---------XPPFXXKXPFFFXLFFXXFPPPXXFFFFXXXPX 264
           P    FF PP     PPP          PPF    P F       F PP     F   P 
Sbjct: 290 PPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPY 349

Query: 263 PPXWGGXPP 237
           PP +   PP
Sbjct: 350 PPFFPPPPP 358


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 22/69 (31%), Positives = 23/69 (33%), Gaps = 9/69 (13%)
 Frame = -2

Query: 416 PXXXFFFFPPLXXXXPPP---------XPPFXXKXPFFFXLFFXXFPPPXXFFFFXXXPX 264
           P    FF PP     PPP          PPF    P F       F PP     F   P 
Sbjct: 290 PPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPY 349

Query: 263 PPXWGGXPP 237
           PP +   PP
Sbjct: 350 PPFFPPPPP 358


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.311    0.145    0.469 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,524,700
Number of Sequences: 27780
Number of extensions: 272909
Number of successful extensions: 2498
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2125
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3349461018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)