Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_J11
         (1197 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch...   186   4e-48
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...   186   5e-48
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    29   1.3  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    29   1.7  
SPBC800.07c |tsf1||mitochondrial translation elongation factor E...    28   3.0  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    26   9.0  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    26   9.0  

>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 160

 Score =  186 bits (454), Expect = 4e-48
 Identities = 90/143 (62%), Positives = 104/143 (72%), Gaps = 1/143 (0%)
 Frame = +2

Query: 122 FARRFRTHGTLPLSTYMKVXKVGAIVAISGNGAVQKGMPHKVYHGKXGRVYNVTAHALGV 301
           F R FR HG + LSTY+K  KVG IV I  NGAVQKGMPHK YHGK G VYNVT  ++GV
Sbjct: 15  FQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGV 74

Query: 302 IVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 481
           ++ K V  R + KR+N+R+EHVKHSKCRQDFL RVK NE   KEAKA GKTV L+RQPAP
Sbjct: 75  LIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAP 134

Query: 482 PKAAHIVS-GTEKPVLLAPIPYE 547
           P  AH VS    +PV L P+ Y+
Sbjct: 135 PATAHFVSTENNEPVTLHPVAYD 157


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score =  186 bits (453), Expect = 5e-48
 Identities = 90/143 (62%), Positives = 104/143 (72%), Gaps = 1/143 (0%)
 Frame = +2

Query: 122 FARRFRTHGTLPLSTYMKVXKVGAIVAISGNGAVQKGMPHKVYHGKXGRVYNVTAHALGV 301
           F R FR HG + LSTY+K  KVG IV I  NGAVQKGMPHK YHGK G VYNVT  ++GV
Sbjct: 15  FQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGV 74

Query: 302 IVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 481
           ++ K V  R + KR+N+R+EHVKHSKCRQDFL RVK NE   KEAKA GKTV L+RQPAP
Sbjct: 75  LIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAP 134

Query: 482 PKAAHIVS-GTEKPVLLAPIPYE 547
           P  AH VS    +PV L P+ Y+
Sbjct: 135 PAKAHFVSTENNEPVTLHPVAYD 157


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 82  PHSKGSRRGTRVLVRSQVPHTWNSSALHVHESVQSWSHCSHQRQWCSSK 228
           PH K +   TR   RS      +S +  + ESV S+   +H R+   SK
Sbjct: 97  PHKKSTSTSTRKRARSSKKKATDSVSDKIDESVASYDSSTHLRRSSRSK 145


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
 Frame = -3

Query: 520 GFLSSTDDVGSFRGSWLSLQVDGLAGSL-GFLQ*PL----ILFDSLKEVLSALGVLDMLN 356
           GF S+T    SF+G W+ L +  + G L G LQ  +     +++SL EV  ++ +   L+
Sbjct: 445 GFASATILPMSFQGGWIDLPIAFILGCLVGILQHYIAPRSTMYNSLFEVTGSI-ITSFLS 503

Query: 355 TDIDALRYN 329
               ++RY+
Sbjct: 504 RAFGSIRYS 512


>SPBC800.07c |tsf1||mitochondrial translation elongation factor
           EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/56 (25%), Positives = 30/56 (53%)
 Frame = +2

Query: 80  CXTPRVPAAAPGXLFARRFRTHGTLPLSTYMKVXKVGAIVAISGNGAVQKGMPHKV 247
           C   RVP+ A G        +HG    S   ++ ++G++V I+ + + +KG+ +++
Sbjct: 202 CMNARVPSTAIGIF------SHGAKQSSPLQQLGRIGSMVQINSDLSTRKGLSNQI 251


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = -3

Query: 451 LAGSLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESM 287
           +A SLG  Q   +L      +LSA G   M   D+ +    PS+ TL D++TES+
Sbjct: 509 IAKSLGITQ---VLVHKYSSILSAYG---MALADVVSEVQEPSSFTLDDSNTESI 557


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +1

Query: 160 LHVHESVQSWSHCSHQRQWCSSKGYATQSIPW 255
           L  H    SW+     R+ C +KGY     PW
Sbjct: 202 LDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,947,370
Number of Sequences: 5004
Number of extensions: 48593
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 645466968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)