Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_J11
(1197 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0310 - 16669565-16669822,16670558-16670794 154 1e-37
03_01_0290 + 2246791-2247027,2248089-2248346 152 5e-37
04_04_0823 + 28383798-28383864,28384475-28384877,28387388-283879... 32 1.0
09_04_0688 + 19475847-19477034,19477133-19477384,19477778-194778... 30 3.1
08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715,230... 30 3.1
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 30 3.1
02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812 30 3.1
09_06_0235 - 21763470-21764511,21767865-21768261,21768625-217686... 29 5.5
05_03_0549 - 15349259-15349346,15349466-15349585,15349899-153500... 29 5.5
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612... 29 5.5
01_06_1794 - 39919363-39920025 29 5.5
07_01_1052 - 9234506-9235037,9235148-9235849,9236169-9236313,923... 29 7.2
01_01_0990 + 7847066-7847478,7847713-7848679 29 9.6
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 154 bits (374), Expect = 1e-37
Identities = 73/145 (50%), Positives = 100/145 (68%)
Frame = +2
Query: 119 LFARRFRTHGTLPLSTYMKVXKVGAIVAISGNGAVQKGMPHKVYHGKXGRVYNVTAHALG 298
LFAR FR G +PL+TY++ K+G V + NGAV KGMPHK YHG+ GRV+NVT A+G
Sbjct: 14 LFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIG 73
Query: 299 VIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPA 478
V +NK+V RII KRI++RVEHV+ S+C ++F R +N++L +AKA G+ ++ KRQP
Sbjct: 74 VEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAKARGEVISTKRQPQ 133
Query: 479 PPKAAHIVSGTEKPVLLAPIPYEFV 553
PK +V G + PIPY+ V
Sbjct: 134 GPKPGFMVEGATLET-VTPIPYDVV 157
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 152 bits (369), Expect = 5e-37
Identities = 72/145 (49%), Positives = 99/145 (68%)
Frame = +2
Query: 119 LFARRFRTHGTLPLSTYMKVXKVGAIVAISGNGAVQKGMPHKVYHGKXGRVYNVTAHALG 298
LFAR FR G +PL+TY++ K+G V + NGAV KGMPHK YHG+ GRV+NVT A+G
Sbjct: 14 LFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIG 73
Query: 299 VIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPA 478
V +NK+V RII KRI++RVEHV+ S+C ++ R +N++L +AKA G+ ++ KRQP
Sbjct: 74 VEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAKARGEVISTKRQPE 133
Query: 479 PPKAAHIVSGTEKPVLLAPIPYEFV 553
PK +V G + PIPY+ V
Sbjct: 134 GPKPGFMVEGATLET-VTPIPYDVV 157
>04_04_0823 +
28383798-28383864,28384475-28384877,28387388-28387932,
28387978-28388594
Length = 543
Score = 31.9 bits (69), Expect = 1.0
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +1
Query: 205 QRQW-CS--SKGYATQSIPWKXRSRVQRDCSCS--RCDCQQACSRKDYTEAHQYPC*ACQ 369
+++W C SK YA QS WK S++ C RCDC SR+D H+ C A
Sbjct: 117 EKKWKCDKCSKRYAVQS-DWKAHSKI---CGTREYRCDCGTLFSRRDSFITHRAFCDA-- 170
Query: 370 ALQVQTRLP 396
Q +RLP
Sbjct: 171 LAQESSRLP 179
>09_04_0688 +
19475847-19477034,19477133-19477384,19477778-19477858,
19477907-19478072,19479009-19479445,19479781-19479837
Length = 726
Score = 30.3 bits (65), Expect = 3.1
Identities = 16/76 (21%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = -3
Query: 364 MLNTDIDALRYNPSANTLVDNHTESMSSHVVHATXLSMVYFVWHTLLN-CTIAADGYNGS 188
++ ++ AL ++ + + ++ +SH++HA + ++Y + L++ C G N
Sbjct: 512 VVTANVSALSWSSYDGIFIIAYMDNAASHLIHAGHIDVLYTIHELLISGCKGCRPGQN-C 570
Query: 187 NFXHFHVRGERKSSMC 140
N +G RK+ C
Sbjct: 571 NLIDDSEKGGRKNMTC 586
>08_01_0283 -
2304024-2304111,2304224-2304343,2304594-2304715,
2304824-2305096,2305454-2305558,2305635-2305851,
2306012-2306262,2306518-2306724,2307087-2307351,
2308655-2308749
Length = 580
Score = 30.3 bits (65), Expect = 3.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 187 WSHCSHQRQWCSSKGYATQSIPWKXRSRVQRDCS 288
W H QW YAT+ I W+ R+ V D S
Sbjct: 535 WISIGHSTQWLWYSVYATKQISWRTRALVISDWS 568
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 30.3 bits (65), Expect = 3.1
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Frame = +1
Query: 205 QRQW-CS--SKGYATQSIPWKXRSRVQRDCSCSRCDCQQACSRKDYTEAHQYPC*ACQAL 375
+++W C SK YA QS WK ++ RCDC SR+D H+ C A
Sbjct: 121 EKKWKCDKCSKKYAVQS-DWKAHTKTCGSREY-RCDCGTLFSRRDSFITHRAFCDALAEE 178
Query: 376 QVQTRLP*ESQRE*EATEGSQGCRQDRQP 462
+ R + + T S G + P
Sbjct: 179 SAKARAAPPPPADEDGTSASAGAPPPQAP 207
>02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812
Length = 492
Score = 30.3 bits (65), Expect = 3.1
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +1
Query: 205 QRQW-CS--SKGYATQSIPWKXRSRVQRDCSCS--RCDCQQACSRKDYTEAHQYPC 357
+++W C SK YA QS WK +++ C RCDC SRKD H+ C
Sbjct: 139 EKKWKCDRCSKKYAVQS-DWKAHTKI---CGTKEYRCDCGTIFSRKDSFITHRAFC 190
>09_06_0235 -
21763470-21764511,21767865-21768261,21768625-21768632,
21769489-21769565
Length = 507
Score = 29.5 bits (63), Expect = 5.5
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Frame = +1
Query: 205 QRQW-CS--SKGYATQSIPWKXRSRVQRDCSCS--RCDCQQACSRKDYTEAHQYPC*ACQ 369
+++W C SK YA QS WK S+ C RCDC SR+D H+ C A
Sbjct: 121 EKKWRCDKCSKRYAVQS-DWKAHSKT---CGTREYRCDCGTLFSRRDSFITHRAFCDA-- 174
Query: 370 ALQVQTRLP 396
Q R+P
Sbjct: 175 LAQENARMP 183
>05_03_0549 -
15349259-15349346,15349466-15349585,15349899-15350020,
15350511-15350783,15351398-15351502,15351588-15351804,
15352031-15352281,15352582-15352776,15352881-15353139,
15354617-15354714
Length = 575
Score = 29.5 bits (63), Expect = 5.5
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +1
Query: 187 WSHCSHQRQWCSSKGYATQSIPWKXRSRVQRD 282
W H H QW YA++ W+ R V D
Sbjct: 530 WIHVGHSTQWLWYSVYASKQFSWRTRMLVVSD 561
>03_05_0435 -
24259864-24260206,24260302-24260467,24261175-24261241,
24261553-24261648,24261718-24261898,24262252-24262323,
24262393-24262505,24262596-24262817,24263262-24263910,
24264118-24264206,24265932-24266015,24266219-24266358,
24266522-24266573
Length = 757
Score = 29.5 bits (63), Expect = 5.5
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +1
Query: 148 NSSALHVHESVQSWSHCSHQRQWCSSKGYATQSIPWKXRSRVQRDC--SCSRCDCQQACS 321
N+S ++ H S Q +S G + Q P + R + Q D SC RC C+++
Sbjct: 416 NTSEMNTHNQ----GDYSSQATMPTSAGNSGQENPKRKRQKCQNDNVDSCKRCSCKKSKC 471
Query: 322 RKDYTE 339
K Y E
Sbjct: 472 LKLYCE 477
>01_06_1794 - 39919363-39920025
Length = 220
Score = 29.5 bits (63), Expect = 5.5
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 401 RVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPI 538
R ++ ++ EA AAG + KRQP PP SG A +
Sbjct: 27 RQQQQQQQQYEAAAAGDKTSAKRQPPPPSRLKKTSGRNDDAATAAV 72
>07_01_1052 -
9234506-9235037,9235148-9235849,9236169-9236313,
9236478-9237069
Length = 656
Score = 29.1 bits (62), Expect = 7.2
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -3
Query: 193 GSNFXHFHVRGERKSSMCAEPASEQXPWCR---GGNPWSXARXEPCVTKLDGERK 38
G+ FH+ G ++ +P +EQ R G NPW+ E K+DG K
Sbjct: 81 GTGSIRFHING-KEEKFEFQPRTEQCSMVRIKYGSNPWNIQEVEVEPPKMDGPVK 134
>01_01_0990 + 7847066-7847478,7847713-7848679
Length = 459
Score = 28.7 bits (61), Expect = 9.6
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +1
Query: 205 QRQW-CS--SKGYATQSIPWKXRSRVQRDCSCS--RCDCQQACSRKDYTEAHQYPC 357
+++W C SK YA QS WK S+ C RCDC SR+D H+ C
Sbjct: 98 EKKWKCDKCSKRYAVQS-DWKAHSKT---CGTREYRCDCGTLFSRRDSFITHRAFC 149
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,065,553
Number of Sequences: 37544
Number of extensions: 372499
Number of successful extensions: 1137
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3654850728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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