Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_J11
         (1197 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal prote...   172   5e-43
AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical...    31   2.1  
U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AL132853-5|CAB60443.1|  279|Caenorhabditis elegans Hypothetical ...    29   6.5  
Z81125-4|CAB03383.3|  594|Caenorhabditis elegans Hypothetical pr...    29   8.6  
Z46267-9|CAA86427.2|  889|Caenorhabditis elegans Hypothetical pr...    29   8.6  

>L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 21 protein.
          Length = 161

 Score =  172 bits (418), Expect = 5e-43
 Identities = 85/148 (57%), Positives = 104/148 (70%), Gaps = 2/148 (1%)
 Frame = +2

Query: 119 LFARRFRTHGTLPLSTYMKVXKVGAIVAISGNGAVQKGMPHKVYHGKXGRVYNVTAHALG 298
           +FAR FR HG   LSTY    K G +V I  NGA QKGMP K YHG+ GR++NVT  A+G
Sbjct: 14  MFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGRTGRIFNVTRGAVG 73

Query: 299 VIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTV-NLKRQP 475
           +IVNKRVRG I+PKRINIR+EH+K SKCR DFL RVK N+   K AK+AG+ V  LKR P
Sbjct: 74  IIVNKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAGQPVPALKRLP 133

Query: 476 APPKAAH-IVSGTEKPVLLAPIPYEFVA 556
             P+ AH + +   +P LLAP+ +E VA
Sbjct: 134 VAPRGAHTVTTQNNEPELLAPLRFEIVA 161


>AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.1 protein.
          Length = 751

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +1

Query: 193 HCSHQRQWCSSKGYATQSIPWKXRSRVQRDCSCSRCDCQQAC 318
           HCS Q   C S  Y      W+ RSRV    +C+  +  Q C
Sbjct: 370 HCSEQDATCDSPFYWCDMKLWRCRSRVVYGGNCTGYEGTQIC 411


>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 458 NLKRQPAPPKAAHIVSGTE 514
           NL+R+PAPPK  H+ S  E
Sbjct: 462 NLRRRPAPPKQNHVASPAE 480


>AL132853-5|CAB60443.1|  279|Caenorhabditis elegans Hypothetical
           protein Y80D3A.9 protein.
          Length = 279

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 523 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 437
           DG LS  D+    RG+WL +   G  G L
Sbjct: 39  DGMLSGVDEKDVARGTWLGMDAHGKVGML 67


>Z81125-4|CAB03383.3|  594|Caenorhabditis elegans Hypothetical
           protein T22A3.6 protein.
          Length = 594

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
 Frame = -3

Query: 238 WHTLLNCTIAADGYNGSNFXHFHVRGERKSSMCAEPASEQX-PWCRGGNPWSXARXEPC 65
           W ++ N T      + S++    +  +   + C  P      PWC  GN  +    +PC
Sbjct: 217 WSSIPNSTFDISDSSSSSYSMNRILPDEYENFCRNPDKNPLGPWCYVGNDTTAPCFQPC 275


>Z46267-9|CAA86427.2|  889|Caenorhabditis elegans Hypothetical
           protein F49E2.5d protein.
          Length = 889

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 356 VEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVN-LKRQPAPPKAAHIVSGTEKPVLLA 532
           VE+V          +  K+N++  K++++   T   ++  PAPP+   +V   EKPV  A
Sbjct: 361 VENVVEKSTTPPATENKKKNKKDKKKSESEKVTEQPVESAPAPPQVEQVVEKVEKPV--A 418

Query: 533 PI 538
           P+
Sbjct: 419 PV 420


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,998,856
Number of Sequences: 27780
Number of extensions: 296836
Number of successful extensions: 949
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3286854270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)