Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_J10
         (1183 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   246   6e-66
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   244   1e-65
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    28   2.2  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    28   2.9  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  246 bits (601), Expect = 6e-66
 Identities = 127/229 (55%), Positives = 159/229 (69%), Gaps = 1/229 (0%)
 Frame = +1

Query: 124 QLFXVVXAHKLRXFXAKRMGAEVAADQLGAXWKGXVLRVAGGNXKQGFPMXQGVLTNSRV 303
           +L  +    +LR F  KRMG EV  D +G  + G V ++ GGN KQGFPM QGVL   RV
Sbjct: 14  KLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHRV 73

Query: 304 RLLMSKGHSCYXPRRDGXRKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRL 483
           RLL+  GH CY PRRDG RKRKSVRGCIV  +L+VLAL IV++G Q+IPGLTD  VP+RL
Sbjct: 74  RLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPKRL 133

Query: 484 GPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPKIQRLVTPVVLQXX 660
           GPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK   KP  KAPKIQRLVTP  LQ  
Sbjct: 134 GPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRLVTPRTLQHK 190

Query: 661 XXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESKVRRQEEIKRRRSASMR 807
                             AE+A+L+A+R  E+K +++E +K RR++SM+
Sbjct: 191 RHRFALKRRQAEKNREEAAEFAQLMAKRVAEAK-QKKEVVKARRASSMK 238


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  244 bits (598), Expect = 1e-65
 Identities = 126/229 (55%), Positives = 158/229 (68%), Gaps = 1/229 (0%)
 Frame = +1

Query: 124 QLFXVVXAHKLRXFXAKRMGAEVAADQLGAXWKGXVLRVAGGNXKQGFPMXQGVLTNSRV 303
           +L  +    +LR F  KRMG EV  D +G  + G V ++ GGN KQGFPM QGVL   RV
Sbjct: 14  KLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHRV 73

Query: 304 RLLMSKGHSCYXPRRDGXRKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRL 483
           RLL+  GH CY PRRDG RKRKSVRGCIV  +L+VLAL I+++G Q+IPGLTD  VP+RL
Sbjct: 74  RLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPKRL 133

Query: 484 GPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPKIQRLVTPVVLQXX 660
           GPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK   KP  KAPKIQRLVTP  LQ  
Sbjct: 134 GPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRLVTPRTLQHK 190

Query: 661 XXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESKVRRQEEIKRRRSASMR 807
                             AE+A+L+A+R  E+K +R E +K RR++S++
Sbjct: 191 RHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKR-EVVKARRASSLK 238


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
 Frame = +1

Query: 523 LSKEDDVRRYVVKRVLPAKEGKEN-AKPRHKAPKIQRLVT-PVVLQXXXXXXXXXXXXXX 696
           L+KE ++R+ +  ++  ++  K    K R + PK +R +T  VV                
Sbjct: 512 LAKEIEMRKSLELKLKLSQSNKAGPVKHRKRRPKSKRRITGKVVFDSPNVASGVESDEGS 571

Query: 697 XXXSSEAEYAKLLAQRKKESKVRRQEEIKRRRSASMR 807
              S ++EY+ +L+      K ++    +RR S+SM+
Sbjct: 572 EEISLDSEYSDILSDDGDFEKEKQATLPRRRSSSSMK 608


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 712 EAEYAKLLAQRKKESKVRRQEEIKRRR 792
           E E  ++L +RK+  K+ ++EE +RRR
Sbjct: 695 EEEEKRILEERKRREKLDKEEEERRRR 721


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,263,249
Number of Sequences: 5004
Number of extensions: 54436
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 635506058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)