Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_J10
(1183 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 223 3e-58
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 222 4e-58
06_03_0739 + 24004629-24005219 30 4.1
10_08_0950 + 21764902-21765912 29 5.4
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296... 29 5.4
02_01_0295 - 1973115-1973404,1974138-1974663 29 5.4
01_02_0020 - 10269252-10269314,10269442-10269483,10269759-102702... 29 9.5
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 223 bits (544), Expect = 3e-58
Identities = 121/219 (55%), Positives = 144/219 (65%), Gaps = 4/219 (1%)
Frame = +1
Query: 151 KLRXFXAKRMGAEVAADQLGAXWKGXVLRVAGGNXKQGFPMXQGVLTNSRVRLLMSKGHS 330
KLR F KR+ EV+ D LG +KG V ++ GG KQGFPM QGVLT RVRLL+ +G
Sbjct: 23 KLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTAGRVRLLLHRGTP 82
Query: 331 CYXP--RRDGXRKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASK 504
C+ RRDG R+RKSVRGCIV +LSV+ LVIV+KG ++PGLTD PR GPKRASK
Sbjct: 83 CFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGENDLPGLTDTEKPRMRGPKRASK 142
Query: 505 IRKLFNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXX 678
IRKLFNLSK+DDVR+YV +R K GK+ + KAPKIQRLVTP+ LQ
Sbjct: 143 IRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVS----KAPKIQRLVTPLTLQRKRARIAD 198
Query: 679 XXXXXXXXXSSEAEYAKLLAQRKKESKVRRQEEIKRRRS 795
S AEY KLLAQR KE + RR E + +RRS
Sbjct: 199 KKKRIAKKKSEAAEYQKLLAQRLKEQRERRSESLAKRRS 237
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 222 bits (543), Expect = 4e-58
Identities = 120/219 (54%), Positives = 145/219 (66%), Gaps = 4/219 (1%)
Frame = +1
Query: 151 KLRXFXAKRMGAEVAADQLGAXWKGXVLRVAGGNXKQGFPMXQGVLTNSRVRLLMSKGHS 330
KLR F KR+ EV+ D LG +KG V ++ GG KQGFPM QGVLT+ RVRLL+ +G
Sbjct: 23 KLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTSGRVRLLLHRGTP 82
Query: 331 CYXP--RRDGXRKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASK 504
C+ RRDG R+RKSVRGCIV +LSV+ LVIV+KG ++PGLTD PR GPKRASK
Sbjct: 83 CFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLPGLTDTEKPRMRGPKRASK 142
Query: 505 IRKLFNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXX 678
IRKLFNL+K+DDVR+YV +R K GK+ + KAPKIQRLVTP+ LQ
Sbjct: 143 IRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVS----KAPKIQRLVTPLTLQRKRARIAQ 198
Query: 679 XXXXXXXXXSSEAEYAKLLAQRKKESKVRRQEEIKRRRS 795
S AEY KLLAQR KE + RR E + +RRS
Sbjct: 199 KKQRIAKKKSEAAEYQKLLAQRLKEQRERRSESLAKRRS 237
>06_03_0739 + 24004629-24005219
Length = 196
Score = 29.9 bits (64), Expect = 4.1
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -2
Query: 258 LXVAASDTKYXALPXSA*LISRDFGAHALCXKXTKLVRXHHXEQLTGSP 112
+ V +SD K+ + L+ R FG H L K LV H L G+P
Sbjct: 87 IIVTSSDAKWRTVSS---LLPRPFGPHDLLPKHVPLVLKPHDSPLVGNP 132
>10_08_0950 + 21764902-21765912
Length = 336
Score = 29.5 bits (63), Expect = 5.4
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -1
Query: 175 ALRKRXEACARPPLRTTDWQPVAGDETLNCNELRAKT 65
A R R E + LR +DW VAG T C T
Sbjct: 64 AYRDRWEGLRKGNLRASDWDDVAGAVTARCGRFPTAT 100
>10_07_0139 +
13327851-13327880,13327999-13329049,13329089-13329648,
13329757-13329904,13330935-13331024,13331148-13331208,
13331301-13331450,13331571-13331629,13332148-13332282,
13333028-13333119,13333210-13333278
Length = 814
Score = 29.5 bits (63), Expect = 5.4
Identities = 13/53 (24%), Positives = 32/53 (60%)
Frame = +1
Query: 478 RLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLV 636
++ PK+A ++ + + +DD+ R V + +P+++ + A+ ++PK +R V
Sbjct: 325 KVEPKKAHCSDRISHKTTQDDMERKVPSKYIPSEKKGKTAESCSRSPKRERRV 377
>02_01_0295 - 1973115-1973404,1974138-1974663
Length = 271
Score = 29.5 bits (63), Expect = 5.4
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = +1
Query: 352 GXRKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGNVPRRLGPKRASKIRKLFNL 525
G ++ RG + + S AL + GA PG +P R+G + +KIRKL +
Sbjct: 177 GIKRHNFKRGLMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMGGTK-TKIRKLKIV 233
Query: 526 SKEDDVRRYVVKRVLPAKEG 585
++D++ ++K +P K G
Sbjct: 234 KIDNDLKVVMIKGAVPGKPG 253
>01_02_0020 -
10269252-10269314,10269442-10269483,10269759-10270244,
10270338-10270421,10270491-10270556,10270718-10270810,
10270901-10271987,10273338-10273362,10273881-10273899
Length = 654
Score = 28.7 bits (61), Expect = 9.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 735 CTEKEGIQGASPGRDQTQALSFN 803
C KE IQGA+PG Q Q + N
Sbjct: 599 CLNKEAIQGANPGDSQMQIIMQN 621
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,189,226
Number of Sequences: 37544
Number of extensions: 416853
Number of successful extensions: 1099
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3619930760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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