Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_J10
         (1183 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   223   2e-58
AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical ...    30   2.8  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  223 bits (545), Expect = 2e-58
 Identities = 121/224 (54%), Positives = 142/224 (63%)
 Frame = +1

Query: 130 FXVVXAHKLRXFXAKRMGAEVAADQLGAXWKGXVLRVAGGNXKQGFPMXQGVLTNSRVRL 309
           F V    KLR F  KRM  EVA D LG  WKG V+R+ GGN KQGFPM QG+LTN RVRL
Sbjct: 16  FEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQGFPMKQGILTNGRVRL 75

Query: 310 LMSKGHSCYXPRRDGXRKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGP 489
           L+ KG SCY  R++G RKRKSVRGCIVDAN+S L+LVIV+KG  EI GLTD  +PR+LGP
Sbjct: 76  LLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGEIEGLTDSVLPRKLGP 135

Query: 490 KRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXX 669
           KRASKIRKLFNL+K DDV +YV+       +G      +  APKIQRL+TP  +      
Sbjct: 136 KRASKIRKLFNLTKHDDVTKYVITHDKTFPDG----VTKTIAPKIQRLITPARIARKKYL 191

Query: 670 XXXXXXXXXXXXSSEAEYAKLLAQRKKESKVRRQEEIKRRRSAS 801
                          A Y KLLA   K SK     +I RRRS++
Sbjct: 192 LRQKRNQKIKMRDDAAAYHKLLA---KYSKEEHDAKIARRRSSA 232


>AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical
           protein Y57A10C.3 protein.
          Length = 364

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -2

Query: 792 APAFDLFLATHLGFLLSLCKQFSIFSLRGLALSETLLLQSETMTSTL 652
           AP F ++    +G L+++C Q SIFS+  L + +  +L ++     L
Sbjct: 69  APFFGIWFELIIGKLITMCYQLSIFSIGNLEIRKFYVLWTDDSNKML 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,658,569
Number of Sequences: 27780
Number of extensions: 327189
Number of successful extensions: 883
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3234681980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)