Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_J10
         (1183 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   3.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   3.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   9.1  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   9.1  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 329 EWPFDIRRRTRLFVRTPCXI 270
           EWP  +R+R  LF+   C +
Sbjct: 406 EWPRLLRKRKELFIAIVCFV 425


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 329 EWPFDIRRRTRLFVRTPCXI 270
           EWP  +R+R  LF+   C +
Sbjct: 459 EWPRLLRKRKELFIAIVCFV 478


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -1

Query: 178 CALRKRXEACARPPLRTTDWQPVAGDETL 92
           C LR R    AR      D QP AG ETL
Sbjct: 628 CGLRDRKYPDARAMGYPFDRQPRAGVETL 656


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 722 MLNCLHRERRNPRCVARKRSNAGAQLQCVI 811
           +L  +   +RNP  V RK+S+   +L+ ++
Sbjct: 112 LLGIVDDYQRNPSVVGRKKSSGWRKLRNIV 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,200
Number of Sequences: 438
Number of extensions: 4069
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40247334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)