Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_J07
         (1240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosac...    71   4e-13
SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S...    68   3e-12

>SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein
           L35a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 70.5 bits (165), Expect = 4e-13
 Identities = 29/46 (63%), Positives = 36/46 (78%)
 Frame = +3

Query: 408 TKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 545
           +K+R IWG + RPHGNSG+VRA+F  NLPA+  G  +RVMLYPS I
Sbjct: 63  SKIRVIWGTIARPHGNSGAVRARFVHNLPAKTFGSSLRVMLYPSNI 108



 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +2

Query: 203 PRHG-RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKK 370
           P  G RLY KA    ++R     H  T+++K+EG   + +A FY GK   YVY++ K
Sbjct: 2   PAQGHRLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSK 58


>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 67.7 bits (158), Expect = 3e-12
 Identities = 28/46 (60%), Positives = 35/46 (76%)
 Frame = +3

Query: 408 TKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 545
           +K+R IWG V+RPHGNSG VRA+F  NLP +  G  +RVMLYPS +
Sbjct: 63  SKIRVIWGTVSRPHGNSGVVRARFTHNLPPKTFGASLRVMLYPSNV 108



 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = +2

Query: 203 PRHG-RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTP 379
           P  G RLY KA    ++R     H  T+L+K+EG   + +A FY GK   +VY++ K  P
Sbjct: 2   PAQGHRLYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNK--P 59

Query: 380 IPG 388
           + G
Sbjct: 60  VRG 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,115,178
Number of Sequences: 5004
Number of extensions: 39474
Number of successful extensions: 98
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 673357516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)