Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_J07
         (1240 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451     77   3e-14
05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009     75   2e-13
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756...    62   9e-10
03_05_1127 + 30587488-30588291                                         35   0.15 
07_01_0308 + 2203597-2203774,2203886-2204066,2204141-2204282,220...    31   2.5  
04_03_0827 - 20108937-20109046,20109146-20109234,20109400-201095...    30   4.3  
07_03_0529 - 19107949-19108152,19108857-19109147,19109817-191099...    29   7.6  

>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
          Length = 112

 Score = 77.0 bits (181), Expect = 3e-14
 Identities = 33/46 (71%), Positives = 37/46 (80%)
 Frame = +3

Query: 408 TKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 545
           T  R IWGKVTRPHGNSG VRAKFKSNLP  +MG ++RV +YPS I
Sbjct: 67  TNYRCIWGKVTRPHGNSGVVRAKFKSNLPPASMGRKVRVFMYPSSI 112



 Score = 60.1 bits (139), Expect = 4e-09
 Identities = 23/54 (42%), Positives = 35/54 (64%)
 Frame = +2

Query: 215 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRT 376
           RLY +    GYKR   NQ+ENT+L+++EG   + +  +Y GK   YVY+AK ++
Sbjct: 11  RLYVRGTILGYKRSKSNQYENTSLVQIEGVNTKEEVAWYCGKRMAYVYKAKTKS 64


>05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009
          Length = 111

 Score = 74.5 bits (175), Expect = 2e-13
 Identities = 31/44 (70%), Positives = 37/44 (84%)
 Frame = +3

Query: 414 LRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 545
           +R IWGKVTRPHGNSG VRAKF+SNLP  +MG ++RV +YPS I
Sbjct: 68  IRCIWGKVTRPHGNSGVVRAKFRSNLPPTSMGKKVRVFMYPSSI 111



 Score = 62.1 bits (144), Expect = 9e-10
 Identities = 26/62 (41%), Positives = 39/62 (62%)
 Frame = +2

Query: 191 KASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKK 370
           K  + +  RLY +    GYKR   NQ+ENT+LL++EG   + +  +YAGK   YVY+AK 
Sbjct: 2   KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKT 61

Query: 371 RT 376
           ++
Sbjct: 62  KS 63


>05_07_0069 +
           27475072-27475136,27475237-27475465,27475532-27475630,
           27476172-27476287,27476670-27476757
          Length = 198

 Score = 62.1 bits (144), Expect = 9e-10
 Identities = 26/62 (41%), Positives = 39/62 (62%)
 Frame = +2

Query: 191 KASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKK 370
           K  + +  RLY +    GYKR   NQ+ENT+LL++EG   + +  +YAGK   YVY+AK 
Sbjct: 2   KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKT 61

Query: 371 RT 376
           ++
Sbjct: 62  KS 63



 Score = 57.6 bits (133), Expect = 2e-08
 Identities = 24/31 (77%), Positives = 27/31 (87%)
 Frame = +3

Query: 414 LRAIWGKVTRPHGNSGSVRAKFKSNLPAQAM 506
           +R IWGKVTRPHGNSG VRAKF+SNLP  +M
Sbjct: 68  IRCIWGKVTRPHGNSGVVRAKFRSNLPPTSM 98


>03_05_1127 + 30587488-30588291
          Length = 267

 Score = 34.7 bits (76), Expect = 0.15
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 508 PIAWAGRLDLNLARTLPELPCGRVTLPQIARSLVFFATGTSGNW 377
           P+ + G+ + ++AR + E P GR+ +P     LV F    +G W
Sbjct: 211 PMMYTGKTEEDMARYIAEAPLGRLGMPDDIAPLVGFLASDAGGW 254


>07_01_0308 +
           2203597-2203774,2203886-2204066,2204141-2204282,
           2204371-2204440,2204546-2204715
          Length = 246

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 466 TLPELPCGRVTLPQIARSLVFFATGTSGNWCPLLSSVHIDAMLA 335
           TL ++ CGR     +     FFA    G+WC LL+ ++I  + A
Sbjct: 152 TLQDVSCGRDLKNFLLVIAGFFAAAIIGSWCNLLTVIYIGFVCA 195


>04_03_0827 -
           20108937-20109046,20109146-20109234,20109400-20109548,
           20109801-20109942,20110530-20110645,20111141-20111458
          Length = 307

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 23/65 (35%), Positives = 28/65 (43%)
 Frame = -2

Query: 444 GGSPCPR*HAAWFFLPRGPPGIGVLFLALYT*TQCLPA*KTASLRSFAPSTLRRAVFSCW 265
           GGSP P        +P+ PPG     LA +   Q L        R+FA  T   A  SC 
Sbjct: 81  GGSPFP--------VPQPPPGADPNALASFKQAQALAGGPLVQARNFAVMTGANAGISCV 132

Query: 264 LRRPR 250
           +RR R
Sbjct: 133 MRRIR 137


>07_03_0529 -
           19107949-19108152,19108857-19109147,19109817-19109939,
           19110019-19110306
          Length = 301

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -3

Query: 539 GRIQHHSYSVSHSLGREVRLE 477
           GR+ HHS+ VS  L R VRLE
Sbjct: 124 GRVLHHSFPVSLFLPRNVRLE 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,877,674
Number of Sequences: 37544
Number of extensions: 316051
Number of successful extensions: 804
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3817805856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)