Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_J07
(1240 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X52966-1|CAA37138.1| 110|Homo sapiens protein ( Human mRNA for ... 90 2e-17
BC061890-1|AAH61890.1| 110|Homo sapiens ribosomal protein L35a ... 90 2e-17
BC017093-1|AAH17093.1| 110|Homo sapiens RPL35A protein protein. 90 2e-17
BC010949-1|AAH10949.1| 110|Homo sapiens ribosomal protein L35a ... 90 2e-17
BC001037-1|AAH01037.1| 110|Homo sapiens ribosomal protein L35a ... 90 2e-17
AY871273-1|AAX11429.1| 110|Homo sapiens cell growth-inhibiting ... 90 2e-17
AL365223-3|CAI15713.1| 96|Homo sapiens ribosomal protein L35a ... 77 1e-13
X94619-1|CAA64325.1| 21|Homo sapiens ribosomal protein L35a pr... 38 0.057
BC146825-1|AAI46826.1| 517|Homo sapiens FOXN4 protein protein. 32 4.9
AF425597-1|AAL23950.1| 218|Homo sapiens forkhead/winged helix t... 32 4.9
AF425596-1|AAL23949.1| 448|Homo sapiens forkhead/winged helix t... 32 4.9
>X52966-1|CAA37138.1| 110|Homo sapiens protein ( Human mRNA for
ribosomal protein L35a. ).
Length = 110
Score = 89.8 bits (213), Expect = 2e-17
Identities = 39/64 (60%), Positives = 47/64 (73%)
Frame = +2
Query: 212 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 391
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY GK C YVY+AK T PGG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG 62
Query: 392 PRGK 403
K
Sbjct: 63 KPNK 66
Score = 86.6 bits (205), Expect = 2e-16
Identities = 40/68 (58%), Positives = 46/68 (67%)
Frame = +3
Query: 342 IASMCTELRRGHQFPEVPVAKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIR 521
+ C + + P K K R IWGKVTR HGNSG V AKF+SNLPA+A+GHRIR
Sbjct: 43 LGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVLAKFRSNLPAKAIGHRIR 102
Query: 522 VMLYPSRI 545
VMLYPSRI
Sbjct: 103 VMLYPSRI 110
>BC061890-1|AAH61890.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 89.8 bits (213), Expect = 2e-17
Identities = 39/64 (60%), Positives = 47/64 (73%)
Frame = +2
Query: 212 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 391
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY GK C YVY+AK T PGG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG 62
Query: 392 PRGK 403
K
Sbjct: 63 KPNK 66
Score = 89.4 bits (212), Expect = 2e-17
Identities = 41/68 (60%), Positives = 47/68 (69%)
Frame = +3
Query: 342 IASMCTELRRGHQFPEVPVAKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIR 521
+ C + + P K K R IWGKVTR HGNSG VRAKF+SNLPA+A+GHRIR
Sbjct: 43 LGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIR 102
Query: 522 VMLYPSRI 545
VMLYPSRI
Sbjct: 103 VMLYPSRI 110
>BC017093-1|AAH17093.1| 110|Homo sapiens RPL35A protein protein.
Length = 110
Score = 89.8 bits (213), Expect = 2e-17
Identities = 39/64 (60%), Positives = 47/64 (73%)
Frame = +2
Query: 212 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 391
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY GK C YVY+AK T PGG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG 62
Query: 392 PRGK 403
K
Sbjct: 63 KPNK 66
Score = 89.4 bits (212), Expect = 2e-17
Identities = 41/68 (60%), Positives = 47/68 (69%)
Frame = +3
Query: 342 IASMCTELRRGHQFPEVPVAKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIR 521
+ C + + P K K R IWGKVTR HGNSG VRAKF+SNLPA+A+GHRIR
Sbjct: 43 LGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIR 102
Query: 522 VMLYPSRI 545
VMLYPSRI
Sbjct: 103 VMLYPSRI 110
>BC010949-1|AAH10949.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 89.8 bits (213), Expect = 2e-17
Identities = 39/64 (60%), Positives = 47/64 (73%)
Frame = +2
Query: 212 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 391
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY GK C YVY+AK T PGG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG 62
Query: 392 PRGK 403
K
Sbjct: 63 KPNK 66
Score = 89.4 bits (212), Expect = 2e-17
Identities = 41/68 (60%), Positives = 47/68 (69%)
Frame = +3
Query: 342 IASMCTELRRGHQFPEVPVAKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIR 521
+ C + + P K K R IWGKVTR HGNSG VRAKF+SNLPA+A+GHRIR
Sbjct: 43 LGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIR 102
Query: 522 VMLYPSRI 545
VMLYPSRI
Sbjct: 103 VMLYPSRI 110
>BC001037-1|AAH01037.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 89.8 bits (213), Expect = 2e-17
Identities = 39/64 (60%), Positives = 47/64 (73%)
Frame = +2
Query: 212 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 391
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY GK C YVY+AK T PGG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG 62
Query: 392 PRGK 403
K
Sbjct: 63 KPNK 66
Score = 89.4 bits (212), Expect = 2e-17
Identities = 41/68 (60%), Positives = 47/68 (69%)
Frame = +3
Query: 342 IASMCTELRRGHQFPEVPVAKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIR 521
+ C + + P K K R IWGKVTR HGNSG VRAKF+SNLPA+A+GHRIR
Sbjct: 43 LGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIR 102
Query: 522 VMLYPSRI 545
VMLYPSRI
Sbjct: 103 VMLYPSRI 110
>AY871273-1|AAX11429.1| 110|Homo sapiens cell growth-inhibiting
protein 33 protein.
Length = 110
Score = 89.8 bits (213), Expect = 2e-17
Identities = 39/64 (60%), Positives = 47/64 (73%)
Frame = +2
Query: 212 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 391
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY GK C YVY+AK T PGG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGG 62
Query: 392 PRGK 403
K
Sbjct: 63 KPNK 66
Score = 89.4 bits (212), Expect = 2e-17
Identities = 41/68 (60%), Positives = 47/68 (69%)
Frame = +3
Query: 342 IASMCTELRRGHQFPEVPVAKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIR 521
+ C + + P K K R IWGKVTR HGNSG VRAKF+SNLPA+A+GHRIR
Sbjct: 43 LGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIR 102
Query: 522 VMLYPSRI 545
VMLYPSRI
Sbjct: 103 VMLYPSRI 110
>AL365223-3|CAI15713.1| 96|Homo sapiens ribosomal protein L35a
pseudogene 3 protein.
Length = 96
Score = 77.4 bits (182), Expect = 1e-13
Identities = 34/64 (53%), Positives = 44/64 (68%)
Frame = +2
Query: 212 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 391
GRL++K+ F GYKR L+NQ E+TALLK+EG +++ FY GK C VY+AK T IPG
Sbjct: 2 GRLWSKSFFAGYKRSLQNQREHTALLKIEGGYAQDETEFYLGKRCACVYKAKSNTMIPGS 61
Query: 392 PRGK 403
K
Sbjct: 62 KPNK 65
Score = 55.2 bits (127), Expect = 5e-07
Identities = 25/38 (65%), Positives = 28/38 (73%)
Frame = +3
Query: 390 VPVAKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQA 503
+P +K K R IWGKVTR H NSG V AKF SNLPA+A
Sbjct: 58 IPGSKPNKSRVIWGKVTRAHRNSGMVAAKFHSNLPAKA 95
>X94619-1|CAA64325.1| 21|Homo sapiens ribosomal protein L35a
protein.
Length = 21
Score = 38.3 bits (85), Expect = 0.057
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +2
Query: 212 GRLYAKAVFTGYKRGLRNQ 268
GRL++KA+F GYKRGLRNQ
Sbjct: 3 GRLWSKAIFAGYKRGLRNQ 21
>BC146825-1|AAI46826.1| 517|Homo sapiens FOXN4 protein protein.
Length = 517
Score = 31.9 bits (69), Expect = 4.9
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = -2
Query: 513 CVP*PGQGG*T*TWLGHCQSCHVGGSPCPR*HAAWFFLPRGPPGIG 376
CVP P G L HVG +P P H PRG PG+G
Sbjct: 71 CVPHPHPGA-----LAGVADLHVGATPSPLLHGPAGMAPRGMPGLG 111
>AF425597-1|AAL23950.1| 218|Homo sapiens forkhead/winged helix
transcription factor FOXN4 protein.
Length = 218
Score = 31.9 bits (69), Expect = 4.9
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = -2
Query: 513 CVP*PGQGG*T*TWLGHCQSCHVGGSPCPR*HAAWFFLPRGPPGIG 376
CVP P G L HVG +P P H PRG PG+G
Sbjct: 31 CVPHPHPGA-----LAGVADLHVGATPSPLLHGPAGMAPRGMPGLG 71
>AF425596-1|AAL23949.1| 448|Homo sapiens forkhead/winged helix
transcription factor FOXN4 protein.
Length = 448
Score = 31.9 bits (69), Expect = 4.9
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = -2
Query: 513 CVP*PGQGG*T*TWLGHCQSCHVGGSPCPR*HAAWFFLPRGPPGIG 376
CVP P G L HVG +P P H PRG PG+G
Sbjct: 31 CVPHPHPGA-----LAGVADLHVGATPSPLLHGPAGMAPRGMPGLG 71
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,827,411
Number of Sequences: 237096
Number of extensions: 1769556
Number of successful extensions: 9329
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9326
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 17614793600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -