Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_J07
         (1240 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal prote...    87   3e-17
Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr...    29   9.0  
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr...    29   9.0  
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p...    29   9.0  
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr...    29   9.0  
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ...    29   9.0  
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ...    29   9.0  

>U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 33 protein.
          Length = 124

 Score = 86.6 bits (205), Expect = 3e-17
 Identities = 39/67 (58%), Positives = 50/67 (74%)
 Frame = +2

Query: 176 TKVLRKASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYV 355
           T V R+ S P  GRLY KA+FTG+KRGLR Q E+T+LLK+EG  ++ DA FYAGK  VY+
Sbjct: 4   TAVARRPSAPTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYL 63

Query: 356 YRAKKRT 376
           Y+A  +T
Sbjct: 64  YKAHNKT 70



 Score = 77.4 bits (182), Expect = 2e-14
 Identities = 32/46 (69%), Positives = 39/46 (84%)
 Frame = +3

Query: 408 TKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 545
           T+ RAIWGK+TRPHGN+G+VRAKF  N+P  A+G RIRV+LYPS I
Sbjct: 79  TRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRVLLYPSNI 124


>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 263 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGK 403
           N  E     KVE AKD+        KHCV  ++A+  +  P   + K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQARPLSDRPENLKAK 580


>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 263 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGK 403
           N  E     KVE AKD+        KHCV  ++A+  +  P   + K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQARPLSDRPENLKAK 580


>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 263 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGK 403
           N  E     KVE AKD+        KHCV  ++A+  +  P   + K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQARPLSDRPENLKAK 580


>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 263 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGK 403
           N  E     KVE AKD+        KHCV  ++A+  +  P   + K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQARPLSDRPENLKAK 580


>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 263 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGK 403
           N  E     KVE AKD+        KHCV  ++A+  +  P   + K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQARPLSDRPENLKAK 580


>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 263 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGK 403
           N  E     KVE AKD+        KHCV  ++A+  +  P   + K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQARPLSDRPENLKAK 580


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,941,214
Number of Sequences: 27780
Number of extensions: 240426
Number of successful extensions: 537
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3432936682
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)