Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_J06
         (1540 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q09085 Cluster: Hydroxyproline-rich glycoprotein; n=2; ...    36   2.8  
UniRef50_A2WXZ6 Cluster: Putative uncharacterized protein; n=2; ...    36   3.8  
UniRef50_Q8H9E1 Cluster: Extensin; n=6; Eukaryota|Rep: Extensin ...    35   6.6  

>UniRef50_Q09085 Cluster: Hydroxyproline-rich glycoprotein; n=2;
            Euphyllophyta|Rep: Hydroxyproline-rich glycoprotein -
            Phaseolus vulgaris (Kidney bean) (French bean)
          Length = 368

 Score = 35.9 bits (79), Expect = 2.8
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = -2

Query: 1146 PPPFFXFFXPPXFFXXKXKXFLGGAPXXXXXXPPPKKXSPRFLFFFXGNPPXSXXXPPPX 967
            PPP + +  PP ++          +P      PPP K      +++   PP S   PPP 
Sbjct: 115  PPPPYYYKSPPYYYKSPPPPSPSPSPYYYKSPPPPHKDPYYPPYYYKSPPPPSPSPPPPY 174

Query: 966  XF 961
             +
Sbjct: 175  YY 176



 Score = 35.9 bits (79), Expect = 2.8
 Identities = 16/62 (25%), Positives = 23/62 (37%)
 Frame = -2

Query: 1146 PPPFFXFFXPPXFFXXKXKXFLGGAPXXXXXXPPPKKXSPRFLFFFXGNPPXSXXXPPPX 967
            PPP    + PP ++           P      PPP   SP   +++   PP     PPP 
Sbjct: 147  PPPHKDPYYPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPDPSPPPPY 206

Query: 966  XF 961
             +
Sbjct: 207  YY 208



 Score = 34.3 bits (75), Expect = 8.7
 Identities = 17/62 (27%), Positives = 23/62 (37%)
 Frame = -2

Query: 1146 PPPFFXFFXPPXFFXXKXKXFLGGAPXXXXXXPPPKKXSPRFLFFFXGNPPXSXXXPPPX 967
            PPP      PP ++           P      PPP   SP   +++   PP S   PPP 
Sbjct: 163  PPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPDPSPPPPYYYKSPPPPSPSPPPPY 222

Query: 966  XF 961
             +
Sbjct: 223  YY 224



 Score = 34.3 bits (75), Expect = 8.7
 Identities = 17/62 (27%), Positives = 23/62 (37%)
 Frame = -2

Query: 1146 PPPFFXFFXPPXFFXXKXKXFLGGAPXXXXXXPPPKKXSPRFLFFFXGNPPXSXXXPPPX 967
            PPP      PP ++           P      PPP   SP   +++   PP S   PPP 
Sbjct: 179  PPPPSPSPPPPYYYKSPPPPDPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPY 238

Query: 966  XF 961
             +
Sbjct: 239  YY 240


>UniRef50_A2WXZ6 Cluster: Putative uncharacterized protein; n=2; Oryza
            sativa|Rep: Putative uncharacterized protein - Oryza
            sativa subsp. indica (Rice)
          Length = 412

 Score = 35.5 bits (78), Expect = 3.8
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = -2

Query: 1146 PPPFFXFFXPPXFFXXKXKXFLGGAPXXXXXXPPPKKXSPRFLFFFXGNPPXSXXXPPPX 967
            PPP++    PP +            P      PPP K  P   ++F  +PP +   PPP 
Sbjct: 277  PPPYYFNSPPPQYQHSPPANSYVSPPLAHQYPPPPYKSPPIPPYYF-NSPPANHYSPPPY 335

Query: 966  XF 961
             F
Sbjct: 336  NF 337


>UniRef50_Q8H9E1 Cluster: Extensin; n=6; Eukaryota|Rep: Extensin -
            Solanum tuberosum (Potato)
          Length = 152

 Score = 34.7 bits (76), Expect = 6.6
 Identities = 17/62 (27%), Positives = 22/62 (35%)
 Frame = -2

Query: 1146 PPPFFXFFXPPXFFXXKXKXFLGGAPXXXXXXPPPKKXSPRFLFFFXGNPPXSXXXPPPX 967
            PPP      PP  +           P      PPP   SP   +++   PP S   PPP 
Sbjct: 4    PPPPSPSLPPPYVYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPSPPPPY 63

Query: 966  XF 961
             +
Sbjct: 64   YY 65


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 642,192,590
Number of Sequences: 1657284
Number of extensions: 9001262
Number of successful extensions: 26605
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19389
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 164538025800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)