Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_J06
         (1540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1682 - 39130696-39131705,39132355-39132583                       36   0.11 
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    29   7.4  
06_03_1370 + 29645598-29646288,29646364-29646752                       29   7.4  
12_02_0299 - 17051570-17052474,17053542-17053755                       29   9.8  
07_03_1136 + 24218601-24218734,24218769-24219906                       29   9.8  

>01_06_1682 - 39130696-39131705,39132355-39132583
          Length = 412

 Score = 35.5 bits (78), Expect = 0.11
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = -2

Query: 1146 PPPFFXFFXPPXFFXXKXKXFLGGAPXXXXXXPPPKKXSPRFLFFFXGNPPXSXXXPPPX 967
            PPP++    PP +            P      PPP K  P   ++F  +PP +   PPP 
Sbjct: 277  PPPYYFNSPPPQYQHSPPANSYVSPPLAHQYPPPPYKSPPIPPYYF-NSPPANHYSPPPY 335

Query: 966  XF 961
             F
Sbjct: 336  NF 337


>08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,
            3308247-3308315,3308427-3308513,3308753-3308858,
            3309118-3309237,3309327-3309406,3309497-3309878,
            3310746-3310814,3311460-3312202
          Length = 644

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -3

Query: 1466 PPXFFFXXTPPXXPXXXXXXXPPPPP 1389
            PP  ++   PP  P       PPPPP
Sbjct: 85   PPQMYYQPPPPPPPYGVNSSQPPPPP 110


>06_03_1370 + 29645598-29646288,29646364-29646752
          Length = 359

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 1389 GGGGGXXXXXXXGGXXGGXXKKKXGGGE 1472
            GGGGG       GG  GG   ++ GGG+
Sbjct: 9    GGGGGGGGGGVGGGGGGGRGGERGGGGD 36


>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 18/62 (29%), Positives = 20/62 (32%)
 Frame = -2

Query: 1146 PPPFFXFFXPPXFFXXKXKXFLGGAPXXXXXXPPPKKXSPRFLFFFXGNPPXSXXXPPPX 967
            PPP F F  PP  +           P       PP    P F F F   PP     P P 
Sbjct: 256  PPPAFPFPLPPWPWAPPPAFPFPHLPPIFSPPSPPPPPPPAFPFPFPQLPPLPHFPPLPS 315

Query: 966  XF 961
             +
Sbjct: 316  FY 317


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 1389 GGGGGXXXXXXXGGXXGGXXKKKXGGG 1469
            GGGGG       GG  GG  ++  GGG
Sbjct: 125  GGGGGARPPAPGGGGGGGAPRRVLGGG 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,538,173
Number of Sequences: 37544
Number of extensions: 397779
Number of successful extensions: 2086
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1766
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4954100116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)