Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_J05
         (1176 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032618-5|CAE17991.1|   83|Caenorhabditis elegans Hypothetical ...    79   6e-15
AF067937-7|AAN84819.1|  392|Caenorhabditis elegans Hypothetical ...    30   2.8  
AF067937-6|AAF99915.1|  426|Caenorhabditis elegans Hypothetical ...    30   2.8  
U28971-6|AAA68380.2|  300|Caenorhabditis elegans Hypothetical pr...    30   3.6  
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr...    29   8.4  

>AL032618-5|CAE17991.1|   83|Caenorhabditis elegans Hypothetical
           protein Y42A5A.5 protein.
          Length = 83

 Score = 79.0 bits (186), Expect = 6e-15
 Identities = 35/64 (54%), Positives = 46/64 (71%)
 Frame = +2

Query: 392 LGRXWPQGFDLFRKRLHKVFSKNSEETDPQKIQIMVKHGEFVVKEIEALYKLKKYRAMKR 571
           +G+ +P G   F  RL   FSKN E  D ++++ ++  GEFVVKEIEALY L+KYRAMK+
Sbjct: 1   MGKEYPGGSKWFHDRLKLAFSKNKEVQDSKQVEQLIARGEFVVKEIEALYSLRKYRAMKQ 60

Query: 572 RYYD 583
           RYYD
Sbjct: 61  RYYD 64


>AF067937-7|AAN84819.1|  392|Caenorhabditis elegans Hypothetical
           protein F22F7.1b protein.
          Length = 392

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 508 TMFYHYLYFLWISFFTILAKYFMKPFSKQV 419
           + FY YL  LWI F +I  KY   PF++++
Sbjct: 276 SQFYGYLIGLWIMFLSIFVKY---PFTRRI 302


>AF067937-6|AAF99915.1|  426|Caenorhabditis elegans Hypothetical
           protein F22F7.1a protein.
          Length = 426

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 508 TMFYHYLYFLWISFFTILAKYFMKPFSKQV 419
           + FY YL  LWI F +I  KY   PF++++
Sbjct: 276 SQFYGYLIGLWIMFLSIFVKY---PFTRRI 302


>U28971-6|AAA68380.2|  300|Caenorhabditis elegans Hypothetical
           protein B0244.5 protein.
          Length = 300

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -3

Query: 577 ISSLHCSVLLQLI*CFNFFNNKLTMFYHYLYFLWISFFTILAKYFMKPFSKQVETLRP-- 404
           ISSL  S ++ ++      +   T+++ +     +SF+++L  Y        + T+RP  
Sbjct: 90  ISSLSASSIMMVLRLLKMLSTSFTVYFLFFLIDDLSFYSLLGSYVGSTLLLYLATVRPIF 149

Query: 403 XSTQIEERFI 374
            S QI  R +
Sbjct: 150 YSIQISVRIV 159


>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical
           protein C18H2.1 protein.
          Length = 1770

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
 Frame = +2

Query: 431 KRLHKVFSKNSEET----DPQKIQIMVKHGEFVVKEI-EAL-YKLK 550
           K+ HK    +S       DPQK+ + +  G FV+KE+ EAL Y+L+
Sbjct: 607 KKSHKTLESDSSPVLKLEDPQKVVLTLGRGMFVLKEMTEALTYRLR 652


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,359,878
Number of Sequences: 27780
Number of extensions: 282595
Number of successful extensions: 656
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3213813064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)