Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_J04
         (1160 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    25   1.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   6.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   9.0  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 797 GMTGLRLASASRACCRPNALRIRSAFTKELCTWNLSRIHADVTSSRASTRS 645
           G+ GL  ++ + + C P A    +  +K       S   A  TSS AS+R+
Sbjct: 142 GLHGLSSSAPTGSSCGPGAAAAAALLSKRRSVSECSLGTASSTSSTASSRN 192


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 290 RRKHQNLKQKRQYLWIMKKTLLRYPKVP*NAP*N 391
           R+   N    R+YL ++K    RY   P NAP N
Sbjct: 437 RKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLN 470


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 994 RSNKASFLKFLXHLFLQYKH 935
           +SN A  L+F  H+ LQ+++
Sbjct: 51  KSNMAKTLQFDVHMMLQFRY 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 268,390
Number of Sequences: 438
Number of extensions: 5783
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 39403827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)