Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_J01
         (1230 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.25 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.43 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 17/39 (43%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
 Frame = +3

Query: 429 PPPPXGXGXXXLGPXPXPPPXTPXPXSXGXGXXVXP-PQ 542
           PPPP   G    GP P PPP  P   S G      P PQ
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP--PPAVSAGGSRYYAPAPQ 798



 Score = 30.3 bits (65), Expect = 0.57
 Identities = 15/39 (38%), Positives = 15/39 (38%)
 Frame = +1

Query: 433 PPPXGXGXXFWAPXPXPXPXPPGPXPXXXGXGXXPPXGG 549
           PPP         P P P P PP P P   G    PP  G
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPP-PAPIMGGPPPPPPPPG 769


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.43
 Identities = 28/103 (27%), Positives = 28/103 (27%), Gaps = 5/103 (4%)
 Frame = +3

Query: 429 PPPPXGXGXXXLGPXPXPP-----PXTPXPXSXGXGXXVXPPQXGXXXXPXNXGXXXXXP 593
           PPPP        G  P PP     P  P P S        PP                 P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396

Query: 594 FXXXAPXGXPPLKGXLXWXFXXGPPPPXRXKKXPPXFPGGAXP 722
               AP   PPL           P PP      PP  P  A P
Sbjct: 397 -GRSAP-ALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP 437



 Score = 27.5 bits (58), Expect = 4.0
 Identities = 28/105 (26%), Positives = 30/105 (28%), Gaps = 8/105 (7%)
 Frame = +3

Query: 423 KQPPPPXGXGXXXLGPXPXP--------PPXTPXPXSXGXGXXVXPPQXGXXXXPXNXGX 578
           K+PPPP        G  P          PP  P P S   G    PPQ      P     
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP---P 365

Query: 579 XXXXPFXXXAPXGXPPLKGXLXWXFXXGPPPPXRXKKXPPXFPGG 713
               P     P   PPL           PPP    +  P   P G
Sbjct: 366 PRSAPSTGRQP---PPLSSSRAVSNPPAPPPAIPGRSAPALPPLG 407


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 28/79 (35%), Positives = 28/79 (35%), Gaps = 1/79 (1%)
 Frame = -2

Query: 719 GCPPXKXGGXFFXPXRG-GGXXGKXPXKGPF*GGGPXXGXXXKRXXXGXPPIXGXTXXPP 543
           G PP   GG  F    G GG        G F GGGP           G P   G      
Sbjct: 198 GGPPPGPGG--FGGFGGFGGEGHHHGGHGGF-GGGPGGFEGGPGGFGGGPGGFGGG---- 250

Query: 542 LGGXNPXPXXXGXGPGGXG 486
           LGG    P   G GPGG G
Sbjct: 251 LGGFGGGPGGFGGGPGGHG 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,282,711
Number of Sequences: 5004
Number of extensions: 30119
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 667380970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)