Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_I24
(1140 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q1HQW7 Cluster: Mitochondrial NADH-ubiquinone oxidoredu... 79 2e-13
UniRef50_Q9VZ01 Cluster: CG11752-PA; n=3; Sophophora|Rep: CG1175... 73 1e-11
UniRef50_UPI00015B564B Cluster: PREDICTED: similar to mitochondr... 52 3e-05
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 50 1e-04
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 44 0.010
UniRef50_Q8BK30 Cluster: NADH dehydrogenase [ubiquinone] flavopr... 42 0.022
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 40 0.16
UniRef50_UPI00015A60D1 Cluster: NADH dehydrogenase [ubiquinone] ... 39 0.21
UniRef50_Q4T4W4 Cluster: Chromosome undetermined SCAF9520, whole... 39 0.21
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 38 0.36
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 37 0.84
UniRef50_P56181 Cluster: NADH dehydrogenase [ubiquinone] flavopr... 36 1.5
UniRef50_Q8WU60 Cluster: NADH dehydrogenase (Ubiquinone) flavopr... 34 5.9
UniRef50_Q2VYF0 Cluster: Mitochondrial NADH oxidoreductase-like ... 34 7.8
>UniRef50_Q1HQW7 Cluster: Mitochondrial NADH-ubiquinone
oxidoreductase 9 kDa subunit-like protein; n=1; Aedes
aegypti|Rep: Mitochondrial NADH-ubiquinone
oxidoreductase 9 kDa subunit-like protein - Aedes
aegypti (Yellowfever mosquito)
Length = 103
Score = 79.4 bits (187), Expect = 2e-13
Identities = 35/59 (59%), Positives = 44/59 (74%)
Frame = +2
Query: 218 EVNGLSSAVIHPASQPVGPGVDPKKTGAYKVPEYFCYDNVSFFEAEIEMAKYRLPQPSA 394
+V GLSS +H + P+GPG + G YKVPEY+CYD S+FEAEIEM K+RLPQPS+
Sbjct: 45 DVPGLSSKCVHSKTGPIGPGAS--RDGEYKVPEYYCYDKNSYFEAEIEMNKFRLPQPSS 101
>UniRef50_Q9VZ01 Cluster: CG11752-PA; n=3; Sophophora|Rep:
CG11752-PA - Drosophila melanogaster (Fruit fly)
Length = 109
Score = 72.9 bits (171), Expect = 1e-11
Identities = 34/58 (58%), Positives = 42/58 (72%)
Frame = +2
Query: 221 VNGLSSAVIHPASQPVGPGVDPKKTGAYKVPEYFCYDNVSFFEAEIEMAKYRLPQPSA 394
V GL+S + P+S PVGPG TG YKVPEY+ ++ S+ EAE+EMAKYR PQPSA
Sbjct: 52 VVGLTSNCVKPSSGPVGPGASA--TGGYKVPEYYSFNRFSYAEAEVEMAKYRCPQPSA 107
>UniRef50_UPI00015B564B Cluster: PREDICTED: similar to mitochondrial
NADH-ubiquinone oxidoreductase 9 kDa subunit-like
protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
similar to mitochondrial NADH-ubiquinone oxidoreductase
9 kDa subunit-like protein - Nasonia vitripennis
Length = 104
Score = 52.0 bits (119), Expect = 3e-05
Identities = 28/58 (48%), Positives = 35/58 (60%)
Frame = +2
Query: 218 EVNGLSSAVIHPASQPVGPGVDPKKTGAYKVPEYFCYDNVSFFEAEIEMAKYRLPQPS 391
EV GL++ V+ +Q VG K YK PEYFCY SF E+ +EM K+RLP PS
Sbjct: 43 EVPGLTNKVVDVPNQAVGYA-GAAKDKEYKNPEYFCYHVDSFGESFVEMEKFRLPAPS 99
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 50.0 bits (114), Expect = 1e-04
Identities = 28/54 (51%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 743 CINESANARGEAVCVLGALPXPRSLTRCARSXGCGXRYQ-XTQRX*YGYPQKSG 901
CI + A AR EAV VL ALP RS TRC RS GCG + YG PQ G
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQG 319
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 43.6 bits (98), Expect = 0.010
Identities = 19/33 (57%), Positives = 22/33 (66%)
Frame = +2
Query: 767 RGEAVCVLGALPXPRSLTRCARSXGCGXRYQXT 865
R +C G +P PRSLTR ARS GCG RY+ T
Sbjct: 26 RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58
>UniRef50_Q8BK30 Cluster: NADH dehydrogenase [ubiquinone]
flavoprotein 3, mitochondrial precursor; n=10;
Murinae|Rep: NADH dehydrogenase [ubiquinone]
flavoprotein 3, mitochondrial precursor - Mus musculus
(Mouse)
Length = 104
Score = 42.3 bits (95), Expect = 0.022
Identities = 17/50 (34%), Positives = 31/50 (62%)
Frame = +2
Query: 245 IHPASQPVGPGVDPKKTGAYKVPEYFCYDNVSFFEAEIEMAKYRLPQPSA 394
+HP +Q V +P T YK ++ Y+ +F + ++++K+RLPQPS+
Sbjct: 48 LHPKTQSVLKEPEPTDTTTYKNLQHHDYNTYTFLDLNLDLSKFRLPQPSS 97
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 39.5 bits (88), Expect = 0.16
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = -1
Query: 795 APNTQTASPRALADSLMQ 742
APNTQTASPRALADSLMQ
Sbjct: 331 APNTQTASPRALADSLMQ 348
>UniRef50_UPI00015A60D1 Cluster: NADH dehydrogenase [ubiquinone]
flavoprotein 3, mitochondrial precursor (EC 1.6.5.3) (EC
1.6.99.3) (NADH-ubiquinone oxidoreductase 9 kDa subunit)
(Complex I-9kD) (CI-9kD) (Renal carcinoma antigen
NY-REN- 4).; n=4; Danio rerio|Rep: NADH dehydrogenase
[ubiquinone] flavoprotein 3, mitochondrial precursor (EC
1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase 9
kDa subunit) (Complex I-9kD) (CI-9kD) (Renal carcinoma
antigen NY-REN- 4). - Danio rerio
Length = 381
Score = 39.1 bits (87), Expect = 0.21
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +2
Query: 272 PGVDPKKTGAYKVPEYFCYDNVSFFEAEIEMAKYRLPQPSA 394
P +P YK ++ Y+ +F + ++EMAKYRLPQPS+
Sbjct: 334 PEPEPFDNTTYKNLQHHNYNMYTFTDMDVEMAKYRLPQPSS 374
>UniRef50_Q4T4W4 Cluster: Chromosome undetermined SCAF9520, whole
genome shotgun sequence; n=3; Tetraodontidae|Rep:
Chromosome undetermined SCAF9520, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 392
Score = 39.1 bits (87), Expect = 0.21
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +2
Query: 254 ASQPVGPGVDPKKTGAYKVPEYFCYDNVSFFEAEIEMAKYRLPQPSA 394
A+ P P +P YK ++ Y +F + ++EMAKYRLPQP+A
Sbjct: 344 AAAPPEPE-EPLDISTYKNYQHHSYHPFTFADMDVEMAKYRLPQPTA 389
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 38.3 bits (85), Expect = 0.36
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3
Query: 741 SALMNRPTXGERRFAYW 791
+ALMNRPT GERRFAYW
Sbjct: 25 AALMNRPTRGERRFAYW 41
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 37.1 bits (82), Expect = 0.84
Identities = 16/19 (84%), Positives = 16/19 (84%)
Frame = +3
Query: 546 DPXMIRYIDEXGQTTTXMQ 602
DP MIRYIDE GQTTT MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_P56181 Cluster: NADH dehydrogenase [ubiquinone]
flavoprotein 3, mitochondrial precursor; n=9;
Eutheria|Rep: NADH dehydrogenase [ubiquinone]
flavoprotein 3, mitochondrial precursor - Homo sapiens
(Human)
Length = 108
Score = 36.3 bits (80), Expect = 1.5
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +2
Query: 251 PASQPVGPGVDPKKTGAYKVPEYFCYDNVSFFEAEIEMAKYRLPQPSA 394
P +P +P YK ++ Y +F + +E++K+R+PQPS+
Sbjct: 54 PPKKPAPVPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSS 101
>UniRef50_Q8WU60 Cluster: NADH dehydrogenase (Ubiquinone)
flavoprotein 3, 10kDa; n=7; Eutheria|Rep: NADH
dehydrogenase (Ubiquinone) flavoprotein 3, 10kDa - Homo
sapiens (Human)
Length = 473
Score = 34.3 bits (75), Expect = 5.9
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 260 QPVGPGVDPKKTGAYKVPEYFCYDNVSFFEAEIEMAKYRLPQPSA 394
+P +P YK ++ Y +F + +E++K+R+PQPS+
Sbjct: 422 EPAPVPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSS 466
>UniRef50_Q2VYF0 Cluster: Mitochondrial NADH oxidoreductase-like
protein; n=2; Eutheria|Rep: Mitochondrial NADH
oxidoreductase-like protein - Homo sapiens (Human)
Length = 112
Score = 33.9 bits (74), Expect = 7.8
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 260 QPVGPGVDPKKTGAYKVPEYFCYDNVSFFEAEIEMAKYRLPQPSA 394
+P +P YK ++ Y +F + +E++K+R+PQPS+
Sbjct: 61 KPAPVPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSKFRMPQPSS 105
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 830,953,072
Number of Sequences: 1657284
Number of extensions: 14026560
Number of successful extensions: 40181
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 32107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39100
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 112626549911
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -