Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_I23
         (1354 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5JUU8 Cluster: Formin B; n=2; Trypanosoma brucei|Rep: ...    35   4.2  
UniRef50_A0DA74 Cluster: Chromosome undetermined scaffold_43, wh...    35   4.2  
UniRef50_Q6CDQ5 Cluster: Similarity; n=2; Saccharomycetales|Rep:...    34   7.4  
UniRef50_Q4RLP1 Cluster: Chromosome 10 SCAF15019, whole genome s...    34   9.8  

>UniRef50_A5JUU8 Cluster: Formin B; n=2; Trypanosoma brucei|Rep:
           Formin B - Trypanosoma brucei TREU927
          Length = 1004

 Score = 35.1 bits (77), Expect = 4.2
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = -1

Query: 988 PPPPPGGXXKLXLNPPXXXXKXPXFGXXPXPPP 890
           PPPPPGG       PP      P  G  P PPP
Sbjct: 502 PPPPPGGKLPPPPPPPGKAPPPPPGGKLPPPPP 534



 Score = 34.7 bits (76), Expect = 5.6
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = -1

Query: 988 PPPPPGGXXKLXLNPPXXXXKXPXFGXXPXPPP 890
           PPPPPGG       PP      P  G  P PPP
Sbjct: 531 PPPPPGGKGAPPPPPPPPGKLGPGGGPPPPPPP 563


>UniRef50_A0DA74 Cluster: Chromosome undetermined scaffold_43, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_43,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1401

 Score = 35.1 bits (77), Expect = 4.2
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = -1

Query: 988 PPPPPGGXXKLXLNPPXXXXKXPXFGXXPXPPP 890
           PPPPPGG   L   PP      P  G    PPP
Sbjct: 811 PPPPPGGSKTLPRPPPPPPPPPPPGGKSAPPPP 843


>UniRef50_Q6CDQ5 Cluster: Similarity; n=2; Saccharomycetales|Rep:
           Similarity - Yarrowia lipolytica (Candida lipolytica)
          Length = 664

 Score = 34.3 bits (75), Expect = 7.4
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -1

Query: 988 PPPPPGGXXKLXLNPPXXXXKXPXFGXXPXPPP 890
           PPPPPG    +   PP        FG  P PPP
Sbjct: 542 PPPPPGPPPAMSGGPPPPPPPPGDFGVTPGPPP 574


>UniRef50_Q4RLP1 Cluster: Chromosome 10 SCAF15019, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 10 SCAF15019, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 826

 Score = 33.9 bits (74), Expect = 9.8
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -1

Query: 988 PPPPPGGXXKLXLNPPXXXXKXPXFGXXPXPPP 890
           PPPPP     L + PP      P  G  P PPP
Sbjct: 331 PPPPPPLPGSLGVAPPPPAPPPPFMGSGPPPPP 363


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 391,571,151
Number of Sequences: 1657284
Number of extensions: 4182912
Number of successful extensions: 10044
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8993
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 140513055373
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)