Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_I23
(1354 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.46
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.46
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.46
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 32 1.1
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 7.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 7.5
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 7.5
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 7.5
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 7.5
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.1 bits (72), Expect = 0.46
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -1
Query: 988 PPPPPGGXXKLXLNPPXXXXKXPXFGXXPXPPP 890
PPPPPGG + PP P G P PPP
Sbjct: 744 PPPPPGGLPPISGGPP--PPPPPPGGCPPPPPP 774
Score = 31.9 bits (69), Expect = 1.1
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Frame = -1
Query: 988 PPPPPGGXXKLXLNPPXXXXK---XPXFGXXPXPPP 890
PPPPPGG + PP P G P PPP
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 763
Score = 30.3 bits (65), Expect = 3.3
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = -1
Query: 988 PPPPPGGXXKLXLNPPXXXXKXPXFGXXPXPPP 890
PPPPPGG PP K G P PPP
Sbjct: 761 PPPPPGGCPPPPPPPPPGGFKG---GPPPPPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.1 bits (72), Expect = 0.46
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -1
Query: 988 PPPPPGGXXKLXLNPPXXXXKXPXFGXXPXPPP 890
PPPPPGG + PP P G P PPP
Sbjct: 744 PPPPPGGLPPISGGPP--PPPPPPGGCPPPPPP 774
Score = 31.9 bits (69), Expect = 1.1
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Frame = -1
Query: 988 PPPPPGGXXKLXLNPPXXXXK---XPXFGXXPXPPP 890
PPPPPGG + PP P G P PPP
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 763
Score = 30.3 bits (65), Expect = 3.3
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = -1
Query: 988 PPPPPGGXXKLXLNPPXXXXKXPXFGXXPXPPP 890
PPPPPGG PP K G P PPP
Sbjct: 761 PPPPPGGCPPPPPPPPPGGFKG---GPPPPPPP 790
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.1 bits (72), Expect = 0.46
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -1
Query: 988 PPPPPGGXXKLXLNPPXXXXKXPXFGXXPXPPP 890
PPPPPGG + PP P G P PPP
Sbjct: 327 PPPPPGGLPPISGGPP--PPPPPPGGCPPPPPP 357
Score = 31.9 bits (69), Expect = 1.1
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Frame = -1
Query: 988 PPPPPGGXXKLXLNPPXXXXK---XPXFGXXPXPPP 890
PPPPPGG + PP P G P PPP
Sbjct: 311 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 346
Score = 30.3 bits (65), Expect = 3.3
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = -1
Query: 988 PPPPPGGXXKLXLNPPXXXXKXPXFGXXPXPPP 890
PPPPPGG PP K G P PPP
Sbjct: 344 PPPPPGGCPPPPPPPPPGGFKG---GPPPPPPP 373
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 31.9 bits (69), Expect = 1.1
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -1
Query: 988 PPPPPGGXXKLXLNPPXXXXKXPXFGXXPXPPP 890
PPPPP L PP P G P PPP
Sbjct: 562 PPPPPPLPQNLSGAPPPPPPPPPMLGGPPPPPP 594
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 7.5
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Frame = -1
Query: 988 PPPPPG------GXXKLXLNPPXXXXKXPXFGXXPXPPP 890
PPPPPG G + PP P G P PPP
Sbjct: 300 PPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPP 338
Score = 29.1 bits (62), Expect = 7.5
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = -1
Query: 988 PPPPPGGXXKLXLNPPXXXXKXPXFGXXPXPPP 890
PPPPP G PP + P G PPP
Sbjct: 334 PPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPP 366
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 7.5
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Frame = -1
Query: 988 PPPPPG------GXXKLXLNPPXXXXKXPXFGXXPXPPP 890
PPPPPG G + PP P G P PPP
Sbjct: 310 PPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPP 348
Score = 29.1 bits (62), Expect = 7.5
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = -1
Query: 988 PPPPPGGXXKLXLNPPXXXXKXPXFGXXPXPPP 890
PPPPP G PP + P G PPP
Sbjct: 344 PPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPP 376
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 7.5
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -1
Query: 988 PPPPPGGXXKLXLNPPXXXXKXPXFGXXPXPPP 890
PPPP G L PP P G PPP
Sbjct: 300 PPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPP 332
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 7.5
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -1
Query: 988 PPPPPGGXXKLXLNPPXXXXKXPXFGXXPXPPP 890
PPPP G L PP P G PPP
Sbjct: 321 PPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPP 353
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 7.5
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -1
Query: 988 PPPPPGGXXKLXLNPPXXXXKXPXFGXXPXPPP 890
PPPP G L PP P G PPP
Sbjct: 306 PPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPP 338
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,034,704
Number of Sequences: 27780
Number of extensions: 119596
Number of successful extensions: 396
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3808844148
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -