Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_I22
(1157 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P49630 Cluster: 60S ribosomal protein L36 (Protein minu... 113 6e-24
UniRef50_Q9Y3U8 Cluster: 60S ribosomal protein L36; n=47; Eutele... 95 3e-18
UniRef50_Q1G198 Cluster: 60S ribosomal protein L36; n=1; Leptino... 87 6e-16
UniRef50_P49181 Cluster: 60S ribosomal protein L36; n=18; Fungi/... 71 6e-11
UniRef50_A2ZZF6 Cluster: 60S ribosomal protein L36; n=9; Eukaryo... 69 2e-10
UniRef50_O80929 Cluster: 60S ribosomal protein L36-1; n=18; Euka... 69 2e-10
UniRef50_Q5KEE1 Cluster: 60S ribosomal protein L36; n=2; Dikarya... 63 2e-08
UniRef50_Q92365 Cluster: 60S ribosomal protein L36-A; n=2; Schiz... 57 8e-07
UniRef50_A7ATP0 Cluster: 60S ribosomal protein L36; n=3; Piropla... 57 1e-06
UniRef50_P05745 Cluster: 60S ribosomal protein L36-A; n=26; Fung... 57 1e-06
UniRef50_UPI0000604754 Cluster: PREDICTED: similar to rat riboso... 53 1e-05
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 52 2e-05
UniRef50_UPI00005A004D Cluster: PREDICTED: similar to ribosomal ... 50 9e-05
UniRef50_Q7XY66 Cluster: Putative 60S ribosomal protein L36; n=1... 50 9e-05
UniRef50_UPI0000EBDDF6 Cluster: PREDICTED: similar to rat riboso... 48 6e-04
UniRef50_Q7R9S3 Cluster: 60S ribosomal protein L36; n=2; Plasmod... 45 0.004
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 44 0.006
UniRef50_P52866 Cluster: 60S ribosomal protein L36; n=13; Eukary... 44 0.006
UniRef50_A0DT55 Cluster: 60S ribosomal protein L36; n=5; Oligohy... 44 0.007
UniRef50_Q8I713 Cluster: 60S Ribosomal protein L36, putative; n=... 42 0.023
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h... 42 0.030
UniRef50_A1BQ89 Cluster: 60S ribosomal protein L36; n=1; Strongy... 41 0.070
UniRef50_UPI00015538C3 Cluster: PREDICTED: similar to 60S riboso... 40 0.12
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 40 0.12
UniRef50_Q8S8Z4 Cluster: 60S ribosomal protein L36 homolog; n=1;... 38 0.37
UniRef50_Q55AQ9 Cluster: 60S ribosomal protein L36; n=2; Dictyos... 38 0.37
UniRef50_Q7QRE6 Cluster: 60S ribosomal protein L36; n=1; Giardia... 37 0.86
UniRef50_Q16KP4 Cluster: 60S ribosomal protein L36; n=1; Aedes a... 37 0.86
UniRef50_Q9BYF3 Cluster: 60S ribosomal protein L36; n=5; Amniota... 36 1.5
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 35 3.5
UniRef50_Q9U919 Cluster: PTGT-4 protein; n=1; Trypanosoma brucei... 35 4.6
>UniRef50_P49630 Cluster: 60S ribosomal protein L36 (Protein
minute(1)1B); n=18; Coelomata|Rep: 60S ribosomal protein
L36 (Protein minute(1)1B) - Drosophila melanogaster
(Fruit fly)
Length = 115
Score = 113 bits (273), Expect = 6e-24
Identities = 57/105 (54%), Positives = 71/105 (67%)
Frame = +1
Query: 88 FAIAVGLXKGHKTTQISAGRKGLTAKAISIRPAXLKGLQTQHSKFVRDLVRXVVGHAQYE 267
+ +A+GL KGHKT++I + K +R + LK +QT+H+KF+RDLVR VVGHA YE
Sbjct: 5 YELAIGLNKGHKTSKIRNVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAPYE 64
Query: 268 XRAMELLKVSXXXXXXXXXXXXXGTHIRAKRKREELSNVLAQMRK 402
R MELLKVS GTHIRAKRKREELSN+L Q+RK
Sbjct: 65 KRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLRK 109
>UniRef50_Q9Y3U8 Cluster: 60S ribosomal protein L36; n=47;
Euteleostomi|Rep: 60S ribosomal protein L36 - Homo
sapiens (Human)
Length = 105
Score = 95.1 bits (226), Expect = 3e-18
Identities = 57/107 (53%), Positives = 66/107 (61%)
Frame = +1
Query: 82 LXFAIAVGLXKGHKTTQISAGRKGLTAKAISIRPAXLKGLQTQHSKFVRDLVRXVVGHAQ 261
L + +AVGL KGHK T K ++ S R +G T+H+KFVRD++R V G A
Sbjct: 3 LRYPMAVGLNKGHKVT------KNVSKPRHSRR----RGRLTKHTKFVRDMIREVCGFAP 52
Query: 262 YEXRAMELLKVSXXXXXXXXXXXXXGTHIRAKRKREELSNVLAQMRK 402
YE RAMELLKVS GTHIRAKRKREELSNVLA MRK
Sbjct: 53 YERRAMELLKVSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>UniRef50_Q1G198 Cluster: 60S ribosomal protein L36; n=1;
Leptinotarsa decemlineata|Rep: 60S ribosomal protein L36
- Leptinotarsa decemlineata (Colorado potato beetle)
Length = 84
Score = 87.4 bits (207), Expect = 6e-16
Identities = 43/74 (58%), Positives = 49/74 (66%)
Frame = +1
Query: 181 PAXLKGLQTQHSKFVRDLVRXVVGHAQYEXRAMELLKVSXXXXXXXXXXXXXGTHIRAKR 360
P LKG+QT+H+KFVRD++R VVGH E R ELLKV GTHIRAKR
Sbjct: 6 PERLKGIQTKHTKFVRDIIREVVGHXPXEKRXXELLKVXKDKRALKFLKRRLGTHIRAKR 65
Query: 361 KREELSNVLAQMRK 402
KREELSN+L QM K
Sbjct: 66 KREELSNILTQMGK 79
>UniRef50_P49181 Cluster: 60S ribosomal protein L36; n=18;
Fungi/Metazoa group|Rep: 60S ribosomal protein L36 -
Caenorhabditis elegans
Length = 104
Score = 70.9 bits (166), Expect = 6e-11
Identities = 41/103 (39%), Positives = 55/103 (53%)
Frame = +1
Query: 94 IAVGLXKGHKTTQISAGRKGLTAKAISIRPAXLKGLQTQHSKFVRDLVRXVVGHAQYEXR 273
+AVGL KGH TQ+ + R KG+ ++ +K VR+LVR + G A YE R
Sbjct: 9 LAVGLNKGHAATQLP----------VKQRQNRHKGVASKKTKIVRELVREITGFAPYERR 58
Query: 274 AMELLKVSXXXXXXXXXXXXXGTHIRAKRKREELSNVLAQMRK 402
+E+L++S GTH RAK KREEL NV+ RK
Sbjct: 59 VLEMLRISKDKRALKFLKRRIGTHRRAKGKREELQNVIIAQRK 101
>UniRef50_A2ZZF6 Cluster: 60S ribosomal protein L36; n=9;
Eukaryota|Rep: 60S ribosomal protein L36 - Oryza sativa
subsp. japonica (Rice)
Length = 143
Score = 69.3 bits (162), Expect = 2e-10
Identities = 36/82 (43%), Positives = 47/82 (57%)
Frame = +1
Query: 154 LTAKAISIRPAXLKGLQTQHSKFVRDLVRXVVGHAQYEXRAMELLKVSXXXXXXXXXXXX 333
+T + + RP+ KG T+ FVR L+R VVG A YE R ELLKV
Sbjct: 20 VTKRELPPRPSDRKGKSTKRVNFVRGLIREVVGFAPYEKRITELLKVGKDKRALKVAKRK 79
Query: 334 XGTHIRAKRKREELSNVLAQMR 399
GTH RAK+KREE++ V+ +MR
Sbjct: 80 LGTHKRAKKKREEMAGVIRKMR 101
>UniRef50_O80929 Cluster: 60S ribosomal protein L36-1; n=18;
Eukaryota|Rep: 60S ribosomal protein L36-1 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 113
Score = 68.9 bits (161), Expect = 2e-10
Identities = 42/100 (42%), Positives = 54/100 (54%)
Frame = +1
Query: 100 VGLXKGHKTTQISAGRKGLTAKAISIRPAXLKGLQTQHSKFVRDLVRXVVGHAQYEXRAM 279
VGL KGH T+ + ++ RP KG ++ + F+R L+R V G A YE R
Sbjct: 12 VGLNKGHVVTR----------RELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRIT 61
Query: 280 ELLKVSXXXXXXXXXXXXXGTHIRAKRKREELSNVLAQMR 399
ELLKV GTH RAKRKREE+S+VL +MR
Sbjct: 62 ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101
>UniRef50_Q5KEE1 Cluster: 60S ribosomal protein L36; n=2;
Dikarya|Rep: 60S ribosomal protein L36 - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 197
Score = 62.9 bits (146), Expect = 2e-08
Identities = 32/75 (42%), Positives = 44/75 (58%)
Frame = +1
Query: 178 RPAXLKGLQTQHSKFVRDLVRXVVGHAQYEXRAMELLKVSXXXXXXXXXXXXXGTHIRAK 357
RP+ KGL+T+ FVR ++R V G + YE R MELL+ S GT +R+K
Sbjct: 120 RPSNKKGLKTEKKTFVRSVIREVAGFSPYEKRVMELLRNSKDKKAKKLTKKRLGTLLRSK 179
Query: 358 RKREELSNVLAQMRK 402
RK EELS V+ + R+
Sbjct: 180 RKIEELSAVIVEQRR 194
>UniRef50_Q92365 Cluster: 60S ribosomal protein L36-A; n=2;
Schizosaccharomyces pombe|Rep: 60S ribosomal protein
L36-A - Schizosaccharomyces pombe (Fission yeast)
Length = 99
Score = 57.2 bits (132), Expect = 8e-07
Identities = 33/84 (39%), Positives = 45/84 (53%)
Frame = +1
Query: 148 KGLTAKAISIRPAXLKGLQTQHSKFVRDLVRXVVGHAQYEXRAMELLKVSXXXXXXXXXX 327
K LT + + RP+ KG ++ + FVR +VR V G A YE R MEL++ S
Sbjct: 13 KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72
Query: 328 XXXGTHIRAKRKREELSNVLAQMR 399
GT RAK K EEL++V+ R
Sbjct: 73 KRLGTLKRAKGKIEELTSVIQSSR 96
>UniRef50_A7ATP0 Cluster: 60S ribosomal protein L36; n=3;
Piroplasmida|Rep: 60S ribosomal protein L36 - Babesia
bovis
Length = 116
Score = 56.8 bits (131), Expect = 1e-06
Identities = 39/106 (36%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Frame = +1
Query: 94 IAVGLXKGHKTTQISAGRKGLTAKAISIRPAXLKGLQTQHSKFVRDLVRXVVGHAQYEXR 273
IAVGL KGH TT I + S+RP+ KGL+T+ + V +++R V G A YE
Sbjct: 16 IAVGLNKGHITTPIPLVK--------SVRPSRKKGLKTKRNALVSEVIREVCGFAPYERH 67
Query: 274 AMELLK---VSXXXXXXXXXXXXXGTHIRAKRKREELSNVLAQMRK 402
+EL+K S GT RAK K +E+ V+ RK
Sbjct: 68 MIELIKTGSASAQKRALKFAKKRLGTLRRAKTKNDEMMRVVELQRK 113
>UniRef50_P05745 Cluster: 60S ribosomal protein L36-A; n=26;
Fungi/Metazoa group|Rep: 60S ribosomal protein L36-A -
Saccharomyces cerevisiae (Baker's yeast)
Length = 100
Score = 56.8 bits (131), Expect = 1e-06
Identities = 36/103 (34%), Positives = 54/103 (52%)
Frame = +1
Query: 94 IAVGLXKGHKTTQISAGRKGLTAKAISIRPAXLKGLQTQHSKFVRDLVRXVVGHAQYEXR 273
IA+GL KG K T ++ K IS + KG + +KFVR LVR + G + YE R
Sbjct: 7 IAIGLNKGKKVTSMTPAPK------ISYK----KGAASNRTKFVRSLVREIAGLSPYERR 56
Query: 274 AMELLKVSXXXXXXXXXXXXXGTHIRAKRKREELSNVLAQMRK 402
++L++ S G+ RAK K EE++N++A R+
Sbjct: 57 LIDLIRNSGEKRARKVAKKRLGSFTRAKAKVEEMNNIIAASRR 99
>UniRef50_UPI0000604754 Cluster: PREDICTED: similar to rat ribosomal
protein L36; n=8; Eutheria|Rep: PREDICTED: similar to
rat ribosomal protein L36 - Mus musculus
Length = 105
Score = 53.2 bits (122), Expect = 1e-05
Identities = 37/103 (35%), Positives = 50/103 (48%)
Frame = +1
Query: 94 IAVGLXKGHKTTQISAGRKGLTAKAISIRPAXLKGLQTQHSKFVRDLVRXVVGHAQYEXR 273
+A+GL KGHK + + K + L T+H+KFV+D++R V Y+
Sbjct: 7 MAMGLDKGHKVMKNISKPKHSSPHR----------LLTKHTKFVQDMIREVCDFMSYDWC 56
Query: 274 AMELLKVSXXXXXXXXXXXXXGTHIRAKRKREELSNVLAQMRK 402
+ L KVS G HI KRK EELS V+A MRK
Sbjct: 57 TVVLPKVSNDKCAFKFIKKRVGMHIHTKRKWEELSIVIAAMRK 99
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 52.4 bits (120), Expect = 2e-05
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +3
Query: 750 SALMNRPTXGXRRFAYWALFRFLAH 824
+ALMNRPT G RRFAYWALFRFLAH
Sbjct: 25 AALMNRPTRGERRFAYWALFRFLAH 49
>UniRef50_UPI00005A004D Cluster: PREDICTED: similar to ribosomal
protein L36; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L36 - Canis familiaris
Length = 107
Score = 50.4 bits (115), Expect = 9e-05
Identities = 26/46 (56%), Positives = 30/46 (65%)
Frame = +1
Query: 265 EXRAMELLKVSXXXXXXXXXXXXXGTHIRAKRKREELSNVLAQMRK 402
+ RAMELLKVS GTH+RAKR+ EELSNVLA +RK
Sbjct: 56 QRRAMELLKVSKDKRTLRLIKKRVGTHVRAKRETEELSNVLAAIRK 101
>UniRef50_Q7XY66 Cluster: Putative 60S ribosomal protein L36; n=1;
Griffithsia japonica|Rep: Putative 60S ribosomal protein
L36 - Griffithsia japonica (Red alga)
Length = 94
Score = 50.4 bits (115), Expect = 9e-05
Identities = 24/66 (36%), Positives = 35/66 (53%)
Frame = +1
Query: 202 QTQHSKFVRDLVRXVVGHAQYEXRAMELLKVSXXXXXXXXXXXXXGTHIRAKRKREELSN 381
Q+ + VR ++ V G A YE R +ELL++ GTH+RAKRKRE+++
Sbjct: 28 QSPRLQVVRSVINEVCGFAPYEKRVIELLRIGKDKRALKFAKKRLGTHLRAKRKREQMAE 87
Query: 382 VLAQMR 399
L R
Sbjct: 88 ALRSKR 93
>UniRef50_UPI0000EBDDF6 Cluster: PREDICTED: similar to rat ribosomal
protein L36; n=1; Bos taurus|Rep: PREDICTED: similar to
rat ribosomal protein L36 - Bos taurus
Length = 131
Score = 47.6 bits (108), Expect = 6e-04
Identities = 31/90 (34%), Positives = 41/90 (45%)
Frame = +1
Query: 133 ISAGRKGLTAKAISIRPAXLKGLQTQHSKFVRDLVRXVVGHAQYEXRAMELLKVSXXXXX 312
++ G+KG L L ++F +D+++ V A E A E KVS
Sbjct: 16 LNKGQKGTKVMTQPRHSCGLGHLIKHTTEFSQDVIQEVFSFALNEQHATEQFKVSKDKQA 75
Query: 313 XXXXXXXXGTHIRAKRKREELSNVLAQMRK 402
GTHI AKRK ELSNVLA R+
Sbjct: 76 LKFIQKMLGTHICAKRKARELSNVLATTRE 105
>UniRef50_Q7R9S3 Cluster: 60S ribosomal protein L36; n=2;
Plasmodium|Rep: 60S ribosomal protein L36 - Plasmodium
yoelii yoelii
Length = 113
Score = 44.8 bits (101), Expect = 0.004
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Frame = +1
Query: 94 IAVGLXKGHKTTQISAGRKGLTAKAISIRPAXLKGLQTQHSKFVRDLVRXVVGHAQYEXR 273
IAVG GH T+ S +K + K++ ++ + D+VR + G + YE R
Sbjct: 13 IAVGFNSGHIVTKRSV-KKSIKKKSVP-----------KNKDLINDVVREIAGFSPYEKR 60
Query: 274 AMELLKV---SXXXXXXXXXXXXXGTHIRAKRKREELSNVLAQMRK 402
+EL+KV + GTH R K KREE+ ++ R+
Sbjct: 61 LIELIKVGTSAATKRSLKYAKKKLGTHKRGKAKREEIQKIVMMQRR 106
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 44.4 bits (100), Expect = 0.006
Identities = 19/29 (65%), Positives = 21/29 (72%)
Frame = +2
Query: 788 VCXLGALPXPRSLTXXARSFGXGERYXLT 874
+C G +P PRSLT ARSFG GERY LT
Sbjct: 30 ICDTGDIPLPRSLTRYARSFGCGERYRLT 58
>UniRef50_P52866 Cluster: 60S ribosomal protein L36; n=13;
Eukaryota|Rep: 60S ribosomal protein L36 - Daucus carota
(Carrot)
Length = 106
Score = 44.4 bits (100), Expect = 0.006
Identities = 27/65 (41%), Positives = 36/65 (55%)
Frame = +1
Query: 100 VGLXKGHKTTQISAGRKGLTAKAISIRPAXLKGLQTQHSKFVRDLVRXVVGHAQYEXRAM 279
VGL KGH T+ K ++ RP+ KG ++ + FVR+L+R V G YE R
Sbjct: 12 VGLNKGHIVTK----------KELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRIT 61
Query: 280 ELLKV 294
ELLKV
Sbjct: 62 ELLKV 66
>UniRef50_A0DT55 Cluster: 60S ribosomal protein L36; n=5;
Oligohymenophorea|Rep: 60S ribosomal protein L36 -
Paramecium tetraurelia
Length = 110
Score = 44.0 bits (99), Expect = 0.007
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Frame = +1
Query: 94 IAVGLXKGHKTTQISAGRKGLTAKAISIRPAXLKGLQTQHSKFVRDLVRXVVGHAQYEXR 273
IAVGL +G T+ LT K + RP+ KG + VR +++ V G + YE R
Sbjct: 6 IAVGLNRGFITSS-------LTKKQLRRRPSQRKGTLGKRVLSVRKVIQEVAGLSPYEKR 58
Query: 274 AMELLKVSXXXXXXXXXXXXX---GTHIRAKRKREELSNVLAQMRK 402
+EL K + GT+ R KRK E + N+ MRK
Sbjct: 59 IIELFKTNQPKDLKKAGKLAAKRLGTNRRGKRKIELVQNLYRAMRK 104
>UniRef50_Q8I713 Cluster: 60S Ribosomal protein L36, putative; n=2;
Plasmodium|Rep: 60S Ribosomal protein L36, putative -
Plasmodium falciparum (isolate 3D7)
Length = 130
Score = 42.3 bits (95), Expect = 0.023
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +1
Query: 205 TQHSKFVRDLVRXVVGHAQYEXRAMELLKV---SXXXXXXXXXXXXXGTHIRAKRKREEL 375
++ + ++D+VR + G + YE R +EL+K+ + GTH R K KREE+
Sbjct: 56 SKRKELIKDVVREITGFSPYEKRIIELIKIGTSASTKRSLKYAKKKLGTHKRGKAKREEI 115
Query: 376 SNVLAQMRK 402
V+ R+
Sbjct: 116 QKVVILQRR 124
>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
Alpha-hemolysin - Aeromonas hydrophila
Length = 59
Score = 41.9 bits (94), Expect = 0.030
Identities = 21/30 (70%), Positives = 21/30 (70%)
Frame = +1
Query: 841 VVRXXXAVXXHSKXVIXLSTXSGDNXGKNM 930
VVR AV HSK VI LST SGDN GKNM
Sbjct: 30 VVRLRRAVSAHSKAVIRLSTESGDNAGKNM 59
>UniRef50_A1BQ89 Cluster: 60S ribosomal protein L36; n=1;
Strongyloides ratti|Rep: 60S ribosomal protein L36 -
Strongyloides ratti
Length = 91
Score = 40.7 bits (91), Expect = 0.070
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = +1
Query: 154 LTAKAISIRPAXLKGLQTQHSKFVRDLVRXVVGHAQYEXRAMELLKV 294
+T A +R +G T+ +K VR+LVR + G A YE R MELL V
Sbjct: 20 VTKNARKMRQNRKRGAATKKTKVVRELVREITGFAPYERRMMELLLV 66
>UniRef50_UPI00015538C3 Cluster: PREDICTED: similar to 60S ribosomal
protein L36; n=1; Mus musculus|Rep: PREDICTED: similar
to 60S ribosomal protein L36 - Mus musculus
Length = 129
Score = 39.9 bits (89), Expect = 0.12
Identities = 28/72 (38%), Positives = 37/72 (51%)
Frame = +1
Query: 82 LXFAIAVGLXKGHKTTQISAGRKGLTAKAISIRPAXLKGLQTQHSKFVRDLVRXVVGHAQ 261
L + +AVGL KGHK +R + G T+H+KF+ + R + G A
Sbjct: 61 LHYPMAVGLNKGHK-----------------VRHSQCHGSLTKHTKFMWGVNREMCGFAS 103
Query: 262 YEXRAMELLKVS 297
YE RA ELLKVS
Sbjct: 104 YEWRATELLKVS 115
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 39.9 bits (89), Expect = 0.12
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +3
Query: 555 DPDMIRYIDEXGQTTTXMQ 611
DPDMIRYIDE GQTTT MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_Q8S8Z4 Cluster: 60S ribosomal protein L36 homolog; n=1;
Allium cepa|Rep: 60S ribosomal protein L36 homolog -
Allium cepa (Onion)
Length = 64
Score = 38.3 bits (85), Expect = 0.37
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +1
Query: 337 GTHIRAKRKREELSNVLAQMR 399
GTH RAKRKREE+SNVL +MR
Sbjct: 35 GTHKRAKRKREEMSNVLRKMR 55
>UniRef50_Q55AQ9 Cluster: 60S ribosomal protein L36; n=2;
Dictyostelium discoideum|Rep: 60S ribosomal protein L36
- Dictyostelium discoideum AX4
Length = 105
Score = 38.3 bits (85), Expect = 0.37
Identities = 21/84 (25%), Positives = 37/84 (44%)
Frame = +1
Query: 133 ISAGRKGLTAKAISIRPAXLKGLQTQHSKFVRDLVRXVVGHAQYEXRAMELLKVSXXXXX 312
I KG ++ K + T+ +RD++R + G + YE R ELLK
Sbjct: 15 IKGFNKGHAVAKRTVTSTFKKQVVTKRVAAIRDVIREISGFSPYERRVSELLKSGLDKRA 74
Query: 313 XXXXXXXXGTHIRAKRKREELSNV 384
G+ K+KR++++N+
Sbjct: 75 LKVAKKRLGSIQAGKKKRDDIANI 98
>UniRef50_Q7QRE6 Cluster: 60S ribosomal protein L36; n=1; Giardia
lamblia ATCC 50803|Rep: 60S ribosomal protein L36 -
Giardia lamblia ATCC 50803
Length = 90
Score = 37.1 bits (82), Expect = 0.86
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +1
Query: 211 HSKFVRDLVRXVVGHAQYEXRAMELLKVSXXXXXXXXXXXXXGTHIRAKRKREELS 378
H +FV+ +++ G A YE +ELL+++ G RAK KR++LS
Sbjct: 29 HQEFVKSIIQECTGMAPYEMHIIELLRMNKDRHALRYAKKRLGNIKRAKAKRDQLS 84
>UniRef50_Q16KP4 Cluster: 60S ribosomal protein L36; n=1; Aedes
aegypti|Rep: 60S ribosomal protein L36 - Aedes aegypti
(Yellowfever mosquito)
Length = 86
Score = 37.1 bits (82), Expect = 0.86
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +1
Query: 124 TTQISAGRKGLTAKAISIRPAXLKG---LQTQHSKFVRDLVRXVVGHAQYEXRAMELLKV 294
T + G K + I R L +QT+ +K VRDL+ VV HA ++ + M+LLKV
Sbjct: 9 TNRHKLGNKSYKLRQIQYREDRLSRTNEIQTKLTKLVRDLIHEVVVHATFKKKDMQLLKV 68
>UniRef50_Q9BYF3 Cluster: 60S ribosomal protein L36; n=5;
Amniota|Rep: 60S ribosomal protein L36 - Homo sapiens
(Human)
Length = 32
Score = 36.3 bits (80), Expect = 1.5
Identities = 19/32 (59%), Positives = 19/32 (59%)
Frame = +1
Query: 286 LKVSXXXXXXXXXXXXXGTHIRAKRKREELSN 381
LKVS GTHIRAKRKREELSN
Sbjct: 1 LKVSKDKRALKFIKKRVGTHIRAKRKREELSN 32
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 35.1 bits (77), Expect = 3.5
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = -3
Query: 804 APNXQTAXPRALADSLMQ 751
APN QTA PRALADSLMQ
Sbjct: 331 APNTQTASPRALADSLMQ 348
>UniRef50_Q9U919 Cluster: PTGT-4 protein; n=1; Trypanosoma
brucei|Rep: PTGT-4 protein - Trypanosoma brucei
Length = 508
Score = 34.7 bits (76), Expect = 4.6
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = -2
Query: 433 NGDGDEPGRLPSSSERARC*VLHASSWRGCVCPIVASRTS 314
+G GD P + P SS + RC L SSWR I +RT+
Sbjct: 99 HGKGDRPSQKPKSSSQKRCRHLSGSSWREPRRTIAPARTA 138
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 691,477,635
Number of Sequences: 1657284
Number of extensions: 9436732
Number of successful extensions: 17169
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 16865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17165
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 115066114169
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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