Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_I22
         (1157 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    57   4e-09
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    57   5e-09
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    27   3.7  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    26   8.7  

>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 57.2 bits (132), Expect = 4e-09
 Identities = 33/84 (39%), Positives = 45/84 (53%)
 Frame = +1

Query: 148 KGLTAKAISIRPAXLKGLQTQHSKFVRDLVRXVVGHAQYEXRAMELLKVSXXXXXXXXXX 327
           K LT + +  RP+  KG  ++ + FVR +VR V G A YE R MEL++ S          
Sbjct: 13  KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 328 XXXGTHIRAKRKREELSNVLAQMR 399
              GT  RAK K EEL++V+   R
Sbjct: 73  KRLGTLKRAKGKIEELTSVIQSSR 96


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 56.8 bits (131), Expect = 5e-09
 Identities = 33/84 (39%), Positives = 45/84 (53%)
 Frame = +1

Query: 148 KGLTAKAISIRPAXLKGLQTQHSKFVRDLVRXVVGHAQYEXRAMELLKVSXXXXXXXXXX 327
           K LT + +  RP+  KG  ++ + FVR +VR V G A YE R MEL++ S          
Sbjct: 13  KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 328 XXXGTHIRAKRKREELSNVLAQMR 399
              GT  RAK K EEL++V+   R
Sbjct: 73  KRLGTLKRAKGKIEELTSVIQSSR 96


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 362 SVKNLATCSLR*GRQPPRLITITI 433
           SVKNL   SL+    PPRLIT+ +
Sbjct: 421 SVKNLKLLSLKYDVTPPRLITVCV 444


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 426 MVMSLGGCLPHLSEHVAKFFTLPLGADVCA 337
           +V SL G    L +  A+FFT PL ++VCA
Sbjct: 544 IVKSLNGEYIALEKIEAQFFTSPLVSNVCA 573


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,764,655
Number of Sequences: 5004
Number of extensions: 38048
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 619568602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)