Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_I21
         (1175 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   134   2e-32
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   134   2e-32
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    30   0.72 

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  134 bits (324), Expect = 2e-32
 Identities = 65/111 (58%), Positives = 81/111 (72%)
 Frame = +2

Query: 179 GAHWPWLRPVLLQYKLQAPXLLLGKXKFSXVXISVPVKGGGHVAXVYAIXQAISKALIAF 358
           GA    ++P +L+ K+  P L+ G  KF+ V I V V GGGHV+ +YAI QAISKA++A+
Sbjct: 30  GAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAISKAIVAY 89

Query: 359 YQXYVXXASKXEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 511
           YQ +V   SK E+K  L+ YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 90  YQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  134 bits (324), Expect = 2e-32
 Identities = 65/111 (58%), Positives = 81/111 (72%)
 Frame = +2

Query: 179 GAHWPWLRPVLLQYKLQAPXLLLGKXKFSXVXISVPVKGGGHVAXVYAIXQAISKALIAF 358
           GA    ++P +L+ K+  P L+ G  KF+ V I V V GGGHV+ +YAI QAISKA++A+
Sbjct: 30  GAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAISKAIVAY 89

Query: 359 YQXYVXXASKXEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 511
           YQ +V   SK E+K  L+ YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 90  YQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 29.9 bits (64), Expect = 0.72
 Identities = 23/70 (32%), Positives = 33/70 (47%)
 Frame = +2

Query: 287 VKGGGHVAXVYAIXQAISKALIAFYQXYVXXASKXEIKDILVQYDRSLLVADPRRCEPKK 466
           V GGG      A+  AISK+LI           +  +K ++   D   ++ D R+ E KK
Sbjct: 69  VHGGGPTGQSGAVHAAISKSLI---------LQEPSLKQVI--KDTHCVLNDKRKVERKK 117

Query: 467 FGGPGARARY 496
            G P AR +Y
Sbjct: 118 TGQPKARKKY 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,119
Number of Sequences: 5004
Number of extensions: 45741
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 631521694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)