Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_I21
(1175 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein. 164 6e-40
BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16 p... 164 6e-40
BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16 p... 164 6e-40
AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16 p... 164 6e-40
AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens ... 65 5e-10
BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein. 54 8e-07
BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal... 32 4.6
BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein. 32 4.6
>M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein.
Length = 146
Score = 164 bits (398), Expect = 6e-40
Identities = 78/105 (74%), Positives = 87/105 (82%)
Frame = +2
Query: 197 LRPVLLQYKLQAPXLLLGKXKFSXVXISVPVKGGGHVAXVYAIXQAISKALIAFYQXYVX 376
+ P LQYKL P LLLGK +F+ V I V VKGGGHVA +YAI Q+ISKAL+A+YQ YV
Sbjct: 42 IEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVD 101
Query: 377 XASKXEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 511
ASK EIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQKSYR
Sbjct: 102 EASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 164 bits (398), Expect = 6e-40
Identities = 78/105 (74%), Positives = 87/105 (82%)
Frame = +2
Query: 197 LRPVLLQYKLQAPXLLLGKXKFSXVXISVPVKGGGHVAXVYAIXQAISKALIAFYQXYVX 376
+ P LQYKL P LLLGK +F+ V I V VKGGGHVA +YAI Q+ISKAL+A+YQ YV
Sbjct: 42 IEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVD 101
Query: 377 XASKXEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 511
ASK EIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQKSYR
Sbjct: 102 EASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 164 bits (398), Expect = 6e-40
Identities = 78/105 (74%), Positives = 87/105 (82%)
Frame = +2
Query: 197 LRPVLLQYKLQAPXLLLGKXKFSXVXISVPVKGGGHVAXVYAIXQAISKALIAFYQXYVX 376
+ P LQYKL P LLLGK +F+ V I V VKGGGHVA +YAI Q+ISKAL+A+YQ YV
Sbjct: 42 IEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVD 101
Query: 377 XASKXEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 511
ASK EIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQKSYR
Sbjct: 102 EASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 164 bits (398), Expect = 6e-40
Identities = 78/105 (74%), Positives = 87/105 (82%)
Frame = +2
Query: 197 LRPVLLQYKLQAPXLLLGKXKFSXVXISVPVKGGGHVAXVYAIXQAISKALIAFYQXYVX 376
+ P LQYKL P LLLGK +F+ V I V VKGGGHVA +YAI Q+ISKAL+A+YQ YV
Sbjct: 42 IEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVD 101
Query: 377 XASKXEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 511
ASK EIKDIL+QYDR+LLVADPRRCE KKFGGPGARARYQKSYR
Sbjct: 102 EASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ40618 fis, clone THYMU2013089, moderately
similar to 40S RIBOSOMAL PROTEIN S16. ).
Length = 178
Score = 64.9 bits (151), Expect = 5e-10
Identities = 36/73 (49%), Positives = 46/73 (63%)
Frame = +2
Query: 197 LRPVLLQYKLQAPXLLLGKXKFSXVXISVPVKGGGHVAXVYAIXQAISKALIAFYQXYVX 376
+R + LQYKL LLL K + + + I V VKG GHV +YA+ Q ISKAL+ Y YV
Sbjct: 53 IRLLTLQYKLLELGLLLDKEQLAGMDIHVRVKGSGHVVQIYAVLQYISKALVPCYPKYVD 112
Query: 377 XASKXEIKDILVQ 415
AS+ EIKD L +
Sbjct: 113 EASE-EIKDTLTR 124
>BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein.
Length = 152
Score = 54.4 bits (125), Expect = 8e-07
Identities = 26/47 (55%), Positives = 31/47 (65%)
Frame = +2
Query: 197 LRPVLLQYKLQAPXLLLGKXKFSXVXISVPVKGGGHVAXVYAIXQAI 337
+ P LQYKL P LLLGK +F+ V I V VKGGGHVA +Y Q +
Sbjct: 42 IEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYGESQEL 88
>BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal
protein S9 protein.
Length = 396
Score = 31.9 bits (69), Expect = 4.6
Identities = 25/74 (33%), Positives = 36/74 (48%)
Frame = +2
Query: 275 ISVPVKGGGHVAXVYAIXQAISKALIAFYQXYVXXASKXEIKDILVQYDRSLLVADPRRC 454
++ V GGG A AI A++KAL +F ++ E++ LL DPR
Sbjct: 328 VTCTVSGGGRSAQAGAIRLAMAKALCSF-------VTEDEVE---WMRQAGLLTTDPRVR 377
Query: 455 EPKKFGGPGARARY 496
E KK G GAR ++
Sbjct: 378 ERKKPGQEGARRKF 391
>BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein.
Length = 302
Score = 31.9 bits (69), Expect = 4.6
Identities = 25/74 (33%), Positives = 36/74 (48%)
Frame = +2
Query: 275 ISVPVKGGGHVAXVYAIXQAISKALIAFYQXYVXXASKXEIKDILVQYDRSLLVADPRRC 454
++ V GGG A AI A++KAL +F ++ E++ LL DPR
Sbjct: 234 VTCTVSGGGRSAQAGAIRLAMAKALCSF-------VTEDEVE---WMRQAGLLTTDPRVR 283
Query: 455 EPKKFGGPGARARY 496
E KK G GAR ++
Sbjct: 284 ERKKPGQEGARRKF 297
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,535,894
Number of Sequences: 237096
Number of extensions: 1947258
Number of successful extensions: 3410
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3394
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 16458822770
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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