Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_I19
(1191 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D56273 Cluster: PREDICTED: hypothetical protein;... 201 2e-50
UniRef50_Q9C0F7 Cluster: KIAA1706 protein; n=29; Euteleostomi|Re... 125 2e-27
UniRef50_Q4RIW6 Cluster: Chromosome undetermined SCAF15041, whol... 113 6e-24
UniRef50_UPI0000584CEA Cluster: PREDICTED: similar to KIAA1706 p... 111 3e-23
UniRef50_A6LNS9 Cluster: Competence protein ComEA helix-hairpin-... 91 7e-17
UniRef50_A7HNQ6 Cluster: Competence protein ComEA helix-hairpin-... 77 1e-12
UniRef50_Q9X0E2 Cluster: ComEA protein-related protein; n=2; The... 68 6e-10
UniRef50_Q67SA3 Cluster: Putative DNA-binding protein; n=1; Symb... 59 2e-07
UniRef50_Q1D6Q9 Cluster: ComE protein; n=2; Cystobacterineae|Rep... 59 3e-07
UniRef50_Q8XIJ9 Cluster: ComE operon protein; n=3; Clostridium p... 58 4e-07
UniRef50_Q5KWY4 Cluster: Late competence protein; n=2; Geobacill... 58 4e-07
UniRef50_Q3XYU3 Cluster: Competence protein ComEA helix-hairpin-... 58 6e-07
UniRef50_Q6F851 Cluster: Putative DNA uptake protein and/or rela... 57 8e-07
UniRef50_A3XGR6 Cluster: Putative uncharacterized protein; n=1; ... 57 8e-07
UniRef50_A5D3Z2 Cluster: Hypothetical membrane protein; n=1; Pel... 57 1e-06
UniRef50_A3IF87 Cluster: Competence protein comEA; n=1; Bacillus... 57 1e-06
UniRef50_Q1PW28 Cluster: Putative uncharacterized protein; n=1; ... 56 1e-06
UniRef50_Q831Q1 Cluster: Competence protein comEA; n=1; Enteroco... 56 2e-06
UniRef50_Q0EYL1 Cluster: Late competence protein required for DN... 56 2e-06
UniRef50_A6L0G4 Cluster: Putative uncharacterized protein; n=1; ... 56 2e-06
UniRef50_Q70T35 Cluster: ComEA protein; n=2; Bacillus|Rep: ComEA... 55 3e-06
UniRef50_Q182I3 Cluster: Putative competence protein precursor; ... 55 4e-06
UniRef50_Q8FN96 Cluster: Putative uncharacterized protein; n=1; ... 54 6e-06
UniRef50_Q2ACP1 Cluster: Competence protein ComEA helix-hairpin-... 54 6e-06
UniRef50_Q03JE8 Cluster: DNA uptake protein or related DNA-bindi... 54 6e-06
UniRef50_A5FIK8 Cluster: Putative uncharacterized protein; n=3; ... 54 6e-06
UniRef50_A3DET3 Cluster: Competence protein ComEA helix-hairpin-... 54 6e-06
UniRef50_Q8A1M0 Cluster: Putative uncharacterized protein; n=5; ... 54 7e-06
UniRef50_Q0YG37 Cluster: Helix-hairpin-helix motif precursor; n=... 54 1e-05
UniRef50_A4EC57 Cluster: Putative uncharacterized protein; n=1; ... 54 1e-05
UniRef50_Q15QY4 Cluster: Competence protein ComEA helix-hairpin-... 53 1e-05
UniRef50_A5UT74 Cluster: Helix-hairpin-helix motif precursor; n=... 53 1e-05
UniRef50_A4J7G9 Cluster: Competence protein ComEA helix-hairpin-... 53 1e-05
UniRef50_A4AT81 Cluster: Putative uncharacterized protein; n=1; ... 53 1e-05
UniRef50_Q83MW2 Cluster: ComE operon protein 1-like protein; n=2... 53 2e-05
UniRef50_Q483A1 Cluster: ComE domain protein; n=1; Colwellia psy... 53 2e-05
UniRef50_Q03F17 Cluster: DNA uptake protein related DNA-binding ... 53 2e-05
UniRef50_A0KYK0 Cluster: Competence protein ComEA helix-hairpin-... 53 2e-05
UniRef50_Q8G4D7 Cluster: Putative uncharacterized protein; n=2; ... 52 2e-05
UniRef50_Q49Y31 Cluster: Putative DNA uptake protein and related... 52 2e-05
UniRef50_Q2BK91 Cluster: Putative uncharacterized protein; n=1; ... 52 2e-05
UniRef50_Q1ETT2 Cluster: Competence protein ComEA helix-hairpin-... 52 2e-05
UniRef50_A4XAF1 Cluster: Competence protein ComEA helix-hairpin-... 52 2e-05
UniRef50_A2TTL6 Cluster: Putative uncharacterized protein; n=1; ... 52 2e-05
UniRef50_Q47IV8 Cluster: Competence protein ComEA helix-hairpin-... 52 3e-05
UniRef50_Q3AF21 Cluster: Competence protein; n=1; Carboxydotherm... 52 3e-05
UniRef50_Q38WQ9 Cluster: Putative bacterial type II secretion/co... 52 3e-05
UniRef50_Q1ZI08 Cluster: Putative uncharacterized protein; n=1; ... 52 3e-05
UniRef50_A0Q1S7 Cluster: Competence protein; n=1; Clostridium no... 52 3e-05
UniRef50_Q5HNV7 Cluster: ComE operon protein 1, putative; n=2; S... 52 4e-05
UniRef50_Q3E1Z2 Cluster: Helix-hairpin-helix motif; n=1; Chlorof... 52 4e-05
UniRef50_Q5WHH4 Cluster: Late competence protein ComEA; n=1; Bac... 51 5e-05
UniRef50_Q2LTK2 Cluster: DNA-binding protein, ComEA family; n=1;... 51 5e-05
UniRef50_Q2FGD4 Cluster: ComE operon protein 1; n=12; Staphyloco... 51 5e-05
UniRef50_Q9RIA7 Cluster: ComEA protein; n=24; Proteobacteria|Rep... 51 5e-05
UniRef50_A0H2U6 Cluster: Competence protein ComEA helix-hairpin-... 51 5e-05
UniRef50_Q9CER3 Cluster: Competence protein ComEA; n=3; Lactococ... 51 7e-05
UniRef50_Q8RB96 Cluster: DNA uptake protein and related DNA-bind... 51 7e-05
UniRef50_Q6HT65 Cluster: ComE operon protein 1; n=22; Bacillus|R... 51 7e-05
UniRef50_Q1QEJ7 Cluster: Competence protein ComEA helix-hairpin-... 51 7e-05
UniRef50_Q1NUX5 Cluster: Helix-hairpin-helix motif; n=1; delta p... 51 7e-05
UniRef50_O85197 Cluster: Competence protein; n=17; Streptococcus... 51 7e-05
UniRef50_A1S4Z4 Cluster: DNA uptake protein-related DNA-binding ... 51 7e-05
UniRef50_A1RL71 Cluster: Competence protein ComEA helix-hairpin-... 51 7e-05
UniRef50_A0LSY6 Cluster: Helix-hairpin-helix motif; n=1; Acidoth... 51 7e-05
UniRef50_P39694 Cluster: ComE operon protein 1; n=2; Bacillus|Re... 51 7e-05
UniRef50_Q82C63 Cluster: Putative exogenous DNA-binding protein;... 50 9e-05
UniRef50_Q47RQ3 Cluster: Helix-hairpin-helix DNA-binding, class ... 50 9e-05
UniRef50_Q3A6K8 Cluster: DNA uptake/competence protein; n=1; Pel... 50 9e-05
UniRef50_UPI00015C4860 Cluster: hypothetical protein CCC13826_14... 50 1e-04
UniRef50_Q7UJD5 Cluster: Probable comEA-related protein; n=1; Pi... 50 1e-04
UniRef50_Q8VQ77 Cluster: Late competence protein ComEA; n=6; Bac... 50 1e-04
UniRef50_A6CQY2 Cluster: Late competence protein; n=1; Bacillus ... 50 1e-04
UniRef50_A4M6C4 Cluster: Competence protein ComEA helix-hairpin-... 50 1e-04
UniRef50_A0GZS8 Cluster: Helix-hairpin-helix motif; n=1; Chlorof... 50 1e-04
UniRef50_Q5XBA3 Cluster: COME operon protein 1; n=11; Streptococ... 50 2e-04
UniRef50_Q2RKY9 Cluster: Competence protein ComEA helix-hairpin-... 50 2e-04
UniRef50_Q6M3A1 Cluster: Secreted DNA uptake protein or related ... 50 2e-04
UniRef50_Q026M9 Cluster: DNA uptake protein and related DNA-bind... 50 2e-04
UniRef50_A7HBX1 Cluster: DNA uptake protein; n=2; Anaeromyxobact... 50 2e-04
UniRef50_A5CR90 Cluster: Putative uncharacterized protein; n=1; ... 50 2e-04
UniRef50_A4B044 Cluster: Late competence protein; n=1; Alteromon... 50 2e-04
UniRef50_A1UIX9 Cluster: Competence protein ComEA helix-hairpin-... 50 2e-04
UniRef50_A1TBZ2 Cluster: Competence protein ComEA helix-hairpin-... 50 2e-04
UniRef50_Q5P3B5 Cluster: ComE operon protein 1-related protein; ... 49 2e-04
UniRef50_Q4L6U1 Cluster: Similar to late competence operon prote... 49 2e-04
UniRef50_Q9EYL7 Cluster: Competence protein 1; n=12; Listeria mo... 49 2e-04
UniRef50_Q04B44 Cluster: DNA uptake protein related DNA-binding ... 49 2e-04
UniRef50_A3ZUV0 Cluster: Competence protein ComEA-related protei... 49 2e-04
UniRef50_Q92BM9 Cluster: ComEA protein; n=2; Listeria|Rep: ComEA... 49 3e-04
UniRef50_Q8DV80 Cluster: Putative competence protein; n=1; Strep... 49 3e-04
UniRef50_Q3K1S5 Cluster: ComE operon protein 1, putative; n=10; ... 49 3e-04
UniRef50_A7I0K9 Cluster: ComE operon protein 1; n=2; Campylobact... 49 3e-04
UniRef50_A1HQZ8 Cluster: Competence protein ComEA helix-hairpin-... 49 3e-04
UniRef50_Q2Y853 Cluster: Competence protein ComEA helix-hairpin-... 48 4e-04
UniRef50_Q1JY69 Cluster: Competence protein ComEA helix-hairpin-... 48 4e-04
UniRef50_A7JQX9 Cluster: Possible competence protein; n=1; Mannh... 48 4e-04
UniRef50_A6WDK9 Cluster: Competence protein ComEA helix-hairpin-... 48 4e-04
UniRef50_A1A1R1 Cluster: Putative uncharacterized protein; n=2; ... 48 4e-04
UniRef50_UPI00005876FC Cluster: PREDICTED: hypothetical protein;... 48 5e-04
UniRef50_Q41FK3 Cluster: Competence protein ComEA helix-hairpin-... 48 5e-04
UniRef50_A6NW57 Cluster: Putative uncharacterized protein; n=1; ... 48 5e-04
UniRef50_Q8DGH8 Cluster: Tll2339 protein; n=9; Cyanobacteria|Rep... 48 6e-04
UniRef50_Q8DG32 Cluster: DNA uptake protein; n=11; Vibrio|Rep: D... 48 6e-04
UniRef50_Q7WGV0 Cluster: Putative uncharacterized protein; n=2; ... 48 6e-04
UniRef50_Q9EYM5 Cluster: Competence factor ComEA; n=3; Thermus t... 48 6e-04
UniRef50_Q1QVK1 Cluster: Competence protein ComEA helix-hairpin-... 48 6e-04
UniRef50_A4XKH1 Cluster: Competence protein ComEA helix-hairpin-... 48 6e-04
UniRef50_A3U4E0 Cluster: Putative uncharacterized protein; n=1; ... 48 6e-04
UniRef50_Q39UG7 Cluster: DNA uptake protein and related DNA-bind... 47 8e-04
UniRef50_Q2JDK7 Cluster: Helix-hairpin-helix DNA-binding, class ... 47 8e-04
UniRef50_A0RNB7 Cluster: Conserved domain protein; n=1; Campylob... 47 8e-04
UniRef50_Q1WU47 Cluster: ComE operon protein 1; n=1; Lactobacill... 47 8e-04
UniRef50_Q0LPE0 Cluster: Competence protein ComEA helix-hairpin-... 47 8e-04
UniRef50_A4F9N2 Cluster: Competence protein ComEA helix-hairpin-... 47 8e-04
UniRef50_A4AAS4 Cluster: Putative uncharacterized protein; n=1; ... 47 8e-04
UniRef50_A2UAV6 Cluster: Competence protein ComEA helix-hairpin-... 47 8e-04
UniRef50_Q3IE25 Cluster: Putative uncharacterized protein; n=2; ... 47 0.001
UniRef50_Q1AVU6 Cluster: Competence protein ComEA helix-hairpin-... 47 0.001
UniRef50_A7GY27 Cluster: Conserved domain protein; n=1; Campylob... 47 0.001
UniRef50_Q88VD0 Cluster: ComE operon protein 1; n=2; Lactobacill... 46 0.001
UniRef50_Q6A9B7 Cluster: ComE operon protein 1; n=1; Propionibac... 46 0.001
UniRef50_Q3WBP6 Cluster: Helix-hairpin-helix motif precursor; n=... 46 0.001
UniRef50_Q1IVK9 Cluster: Putative uncharacterized protein precur... 46 0.001
UniRef50_A7BDT8 Cluster: Putative uncharacterized protein; n=1; ... 46 0.001
UniRef50_A6G3N0 Cluster: Competence protein comEA; n=1; Plesiocy... 46 0.001
UniRef50_Q9KD84 Cluster: Late competence operon required for DNA... 46 0.002
UniRef50_Q1FL89 Cluster: Competence protein ComEA helix-hairpin-... 46 0.002
UniRef50_Q1CY14 Cluster: Competence protein comEA; n=1; Myxococc... 46 0.002
UniRef50_A4CP66 Cluster: ComEA protein-related protein; n=1; Rob... 46 0.002
UniRef50_A1I9T7 Cluster: ComE domain protein precursor; n=1; Can... 46 0.002
UniRef50_A0V2T6 Cluster: Competence protein ComEA helix-hairpin-... 46 0.002
UniRef50_A0JX55 Cluster: Competence protein ComEA helix-hairpin-... 46 0.002
UniRef50_Q6NFW5 Cluster: Putative membrane protein; n=1; Coryneb... 46 0.003
UniRef50_Q55769 Cluster: ComE ORF1; n=1; Synechocystis sp. PCC 6... 46 0.003
UniRef50_A6VTC2 Cluster: RNA binding S1 domain protein; n=2; Mar... 46 0.003
UniRef50_A5WC41 Cluster: Competence protein ComEA helix-hairpin-... 46 0.003
UniRef50_A4BM59 Cluster: Unspecific high-affinity DNA-binding pr... 46 0.003
UniRef50_Q60AS7 Cluster: Putative competence protein ComE; n=1; ... 45 0.003
UniRef50_Q5H3A8 Cluster: DNA transport competence protein; n=11;... 45 0.003
UniRef50_Q5FKS5 Cluster: Competence protein; n=4; Lactobacillus|... 45 0.003
UniRef50_Q2S2C5 Cluster: Putative uncharacterized protein; n=1; ... 45 0.003
UniRef50_Q4JLN0 Cluster: Lr0776; n=3; Lactobacillus reuteri|Rep:... 45 0.003
UniRef50_A6EFL1 Cluster: Putative uncharacterized protein; n=1; ... 45 0.003
UniRef50_Q8YSV5 Cluster: All2976 protein; n=3; Nostocaceae|Rep: ... 45 0.004
UniRef50_Q8Y8F9 Cluster: Lmo0945 protein; n=13; Listeria|Rep: Lm... 45 0.004
UniRef50_Q66DS9 Cluster: Possible DNA uptake protein ComEA relat... 45 0.004
UniRef50_Q478W5 Cluster: Competence protein ComEA helix-hairpin-... 45 0.004
UniRef50_A6ESZ6 Cluster: ComEA protein-related protein; n=1; uni... 45 0.004
UniRef50_A4SJ96 Cluster: ComEA protein; n=3; Aeromonas|Rep: ComE... 45 0.004
UniRef50_A3TJH6 Cluster: Putative DNA-binding protein; n=1; Jani... 45 0.004
UniRef50_A1T088 Cluster: Competence protein ComEA helix-hairpin-... 45 0.004
UniRef50_A6BGR9 Cluster: Putative uncharacterized protein; n=1; ... 44 0.006
UniRef50_A4CD31 Cluster: Putative uncharacterized protein; n=1; ... 44 0.006
UniRef50_A0Z742 Cluster: Putative uncharacterized protein; n=1; ... 44 0.006
UniRef50_A7T0R6 Cluster: Predicted protein; n=1; Nematostella ve... 44 0.006
UniRef50_Q6LIL0 Cluster: Putative uncharacterized protein; n=3; ... 44 0.008
UniRef50_Q1ZC98 Cluster: Putative uncharacterized protein; n=1; ... 44 0.008
UniRef50_Q18Q70 Cluster: Competence protein ComEA helix-hairpin-... 44 0.008
UniRef50_A6PJD0 Cluster: Competence protein ComEA helix-hairpin-... 44 0.008
UniRef50_A5KJM8 Cluster: Putative uncharacterized protein; n=2; ... 44 0.008
UniRef50_Q8EPV5 Cluster: Late competence protein; n=1; Oceanobac... 44 0.010
UniRef50_Q1PXY4 Cluster: Putative uncharacterized protein; n=1; ... 44 0.010
UniRef50_Q1NXG4 Cluster: Phospholipase D/Transphosphatidylase pr... 44 0.010
UniRef50_Q0AED6 Cluster: Competence protein ComEA helix-hairpin-... 44 0.010
UniRef50_Q03QM7 Cluster: DNA uptake protein related DNA-binding ... 44 0.010
UniRef50_A0X4V8 Cluster: Competence protein ComEA helix-hairpin-... 44 0.010
UniRef50_A5EX63 Cluster: Competence protein ComEA-related protei... 43 0.014
UniRef50_Q9RXU9 Cluster: Putative uncharacterized protein; n=1; ... 43 0.018
UniRef50_Q65RQ5 Cluster: ComEA protein; n=2; Pasteurellaceae|Rep... 43 0.018
UniRef50_A6FES4 Cluster: ComEA; n=1; Moritella sp. PE36|Rep: Com... 43 0.018
UniRef50_A3Y3S0 Cluster: DNA uptake protein; n=10; Vibrionales|R... 43 0.018
UniRef50_A0J9L7 Cluster: Competence protein ComEA helix-hairpin-... 43 0.018
UniRef50_Q4JWS7 Cluster: Putative uncharacterized protein; n=1; ... 42 0.024
UniRef50_Q30UB5 Cluster: Competence protein ComEA helix-hairpin-... 42 0.024
UniRef50_A5FP79 Cluster: DNA uptake protein and related DNA-bind... 42 0.024
UniRef50_Q9N4L5 Cluster: Putative uncharacterized protein; n=2; ... 42 0.024
UniRef50_Q59DV5 Cluster: CG31156-PB, isoform B; n=3; Sophophora|... 42 0.024
UniRef50_Q82VW4 Cluster: Putative DNA transport competence prote... 42 0.031
UniRef50_Q2JI81 Cluster: Phospholipase D/competence protein ComE... 42 0.031
UniRef50_Q1N619 Cluster: DNA uptake protein and related DNA-bind... 42 0.031
UniRef50_A6FX28 Cluster: Putative uncharacterized protein; n=1; ... 42 0.031
UniRef50_A3QFV7 Cluster: Competence protein ComEA helix-hairpin-... 42 0.031
UniRef50_UPI0000D55B34 Cluster: PREDICTED: similar to CG14450-PA... 42 0.042
UniRef50_Q6AL09 Cluster: Putative uncharacterized protein; n=1; ... 42 0.042
UniRef50_Q4A5L5 Cluster: Putative uncharacterized protein; n=2; ... 42 0.042
UniRef50_Q2SJI1 Cluster: DNA uptake protein and related DNA-bind... 42 0.042
UniRef50_Q03VU1 Cluster: DNA uptake protein related DNA-binding ... 42 0.042
UniRef50_Q17DE1 Cluster: S1 RNA binding domain protein, putative... 42 0.042
UniRef50_UPI0000E0E604 Cluster: hypothetical protein OM2255_1963... 41 0.055
UniRef50_Q039L8 Cluster: DNA uptake protein related DNA-binding ... 41 0.055
UniRef50_Q01NQ1 Cluster: Competence protein ComEA helix-hairpin-... 41 0.055
UniRef50_A1U508 Cluster: Competence protein ComEA helix-hairpin-... 41 0.055
UniRef50_Q7VNA6 Cluster: Putative uncharacterized protein; n=1; ... 41 0.073
UniRef50_Q6ALW5 Cluster: Similar to DNA transport competence pro... 41 0.073
UniRef50_Q47FY2 Cluster: Putative uncharacterized protein; n=1; ... 41 0.073
UniRef50_Q2SPG5 Cluster: Protein containing HHH motif; n=1; Hahe... 41 0.073
UniRef50_Q44NK3 Cluster: Helix-hairpin-helix motif; n=5; Chlorob... 41 0.073
UniRef50_Q0A9Z1 Cluster: Competence protein ComEA helix-hairpin-... 41 0.073
UniRef50_A4AGG3 Cluster: Competence protein ComEA helix-hairpin-... 41 0.073
UniRef50_A3YGE0 Cluster: Putative uncharacterized protein; n=1; ... 41 0.073
UniRef50_A1WUI2 Cluster: Transcriptional regulator, Fis family p... 41 0.073
UniRef50_A1R6X3 Cluster: Putative comEA protein; n=1; Arthrobact... 41 0.073
UniRef50_Q8KB66 Cluster: ComEA-related protein; n=1; Chlorobacul... 40 0.096
UniRef50_Q6LNW5 Cluster: Putative DNA uptake protein; n=4; Vibri... 40 0.096
UniRef50_Q080A1 Cluster: Competence protein ComEA helix-hairpin-... 40 0.096
UniRef50_A6LQS8 Cluster: Competence protein ComEA helix-hairpin-... 40 0.096
UniRef50_A6LFY5 Cluster: Putative uncharacterized protein; n=1; ... 40 0.096
UniRef50_A6GK03 Cluster: Competence protein ComEA-related protei... 40 0.096
UniRef50_A3M289 Cluster: Putative DNA uptake protein; n=1; Acine... 40 0.096
UniRef50_Q00XW9 Cluster: Transcriptional accessory protein; n=2;... 40 0.096
UniRef50_UPI000050F794 Cluster: COG1555: DNA uptake protein and ... 40 0.13
UniRef50_Q8RH48 Cluster: Transcription accessory protein; n=9; B... 40 0.13
UniRef50_Q67K87 Cluster: Ribosomal protein S1-like RNA-binding d... 40 0.13
UniRef50_Q12LC2 Cluster: Competence protein ComEA helix-hairpin-... 40 0.13
UniRef50_Q0VNR0 Cluster: ComEA-related protein; n=1; Alcanivorax... 40 0.13
UniRef50_Q025F6 Cluster: Putative uncharacterized protein precur... 40 0.13
UniRef50_A7GZA8 Cluster: ComEA protein; n=1; Campylobacter curvu... 40 0.13
UniRef50_A5IZ64 Cluster: Putative uncharacterized protein; n=1; ... 40 0.13
UniRef50_A4VJE7 Cluster: Putative uncharacterized protein; n=1; ... 40 0.13
UniRef50_A1ARE9 Cluster: Putative uncharacterized protein; n=1; ... 40 0.13
UniRef50_A0W5M0 Cluster: ComEA-related protein precursor; n=1; G... 40 0.13
UniRef50_A7HGA6 Cluster: Helix-hairpin-helix motif precursor; n=... 40 0.17
UniRef50_A7FQJ6 Cluster: RNA-binding protein; n=4; Clostridium b... 40 0.17
UniRef50_A4W7B3 Cluster: Competence protein ComEA helix-hairpin-... 40 0.17
UniRef50_Q17DF5 Cluster: Putative uncharacterized protein; n=1; ... 40 0.17
UniRef50_Q57134 Cluster: Uncharacterized protein HI1008 precurso... 40 0.17
UniRef50_Q3VWX0 Cluster: ComEA-related protein; n=1; Prosthecoch... 39 0.22
UniRef50_A6Q872 Cluster: Transcription accessory protein; n=1; S... 39 0.22
UniRef50_A4SD07 Cluster: Helix-hairpin-helix DNA-binding, class ... 39 0.22
UniRef50_A1SHW1 Cluster: Competence protein ComEA helix-hairpin-... 39 0.22
UniRef50_Q2NGF6 Cluster: Putative uncharacterized protein; n=1; ... 39 0.22
UniRef50_UPI0000D57194 Cluster: PREDICTED: similar to CG31156-PA... 39 0.29
UniRef50_A3I0Z9 Cluster: Putative uncharacterized protein; n=1; ... 39 0.29
UniRef50_P0AAR9 Cluster: Uncharacterized protein ybaV precursor;... 39 0.29
UniRef50_Q8N5C6 Cluster: S1 RNA-binding domain-containing protei... 39 0.29
UniRef50_UPI0000DB7BEF Cluster: PREDICTED: similar to S1 RNA bin... 38 0.39
UniRef50_Q892P4 Cluster: Come operon protein 1; n=6; Clostridium... 38 0.39
UniRef50_Q7MU66 Cluster: Conserved domain protein; n=1; Porphyro... 38 0.39
UniRef50_Q0YI81 Cluster: Helix-hairpin-helix motif; n=1; Geobact... 38 0.39
UniRef50_A6Q6F8 Cluster: DNA uptake protein; n=1; Sulfurovum sp.... 38 0.39
UniRef50_Q92DB8 Cluster: Lin0897 protein; n=97; Firmicutes|Rep: ... 38 0.51
UniRef50_Q5E5X2 Cluster: Putative uncharacterized protein; n=1; ... 38 0.51
UniRef50_A7BWU4 Cluster: Competence protein ComEA helix-hairpin-... 38 0.51
UniRef50_A5I0J3 Cluster: Putative membrane protein; n=4; Clostri... 38 0.51
UniRef50_A4M6H3 Cluster: RNA binding S1 domain protein; n=1; Pet... 38 0.51
UniRef50_A3ZZ79 Cluster: Ribosomal protein S1-like RNA-binding d... 38 0.51
UniRef50_A0YFD4 Cluster: Competence protein ComEA helix-hairpin-... 38 0.51
UniRef50_A0IWY1 Cluster: Competence protein ComEA helix-hairpin-... 38 0.51
UniRef50_A7S4Y8 Cluster: Predicted protein; n=1; Nematostella ve... 38 0.51
UniRef50_Q9CKF6 Cluster: Putative uncharacterized protein PM1665... 38 0.68
UniRef50_Q4ZQA5 Cluster: Competence protein ComEA helix-hairpin-... 38 0.68
UniRef50_Q3SI14 Cluster: Competence protein ComEA precursor; n=1... 38 0.68
UniRef50_A3WQC9 Cluster: DNA uptake protein, DNA-binding; n=1; I... 38 0.68
UniRef50_Q21IS7 Cluster: Competence protein ComEA helix-hairpin-... 37 0.89
UniRef50_Q0AWK6 Cluster: Competence protein ComEA helix-hairpin-... 37 0.89
UniRef50_A1FWY0 Cluster: Competence protein ComEA helix-hairpin-... 37 0.89
UniRef50_Q8FGH2 Cluster: Putative uncharacterized protein; n=2; ... 37 1.2
UniRef50_A6LZZ5 Cluster: Putative uncharacterized protein; n=1; ... 37 1.2
UniRef50_A1FL53 Cluster: Competence protein ComEA helix-hairpin-... 37 1.2
UniRef50_UPI0000DAE846 Cluster: hypothetical protein Rgryl_01001... 36 1.6
UniRef50_Q022M3 Cluster: Putative uncharacterized protein precur... 36 1.6
UniRef50_Q9HQH0 Cluster: Putative uncharacterized protein; n=4; ... 36 2.1
UniRef50_A2BHW7 Cluster: Novel protein; n=5; Clupeocephala|Rep: ... 36 2.7
UniRef50_Q9RTB0 Cluster: Competence protein ComEA-related protei... 36 2.7
UniRef50_Q8EN07 Cluster: Late competence protein; n=1; Oceanobac... 36 2.7
UniRef50_Q30TR1 Cluster: Putative uncharacterized protein; n=1; ... 36 2.7
UniRef50_O67318 Cluster: Putative uncharacterized protein; n=1; ... 36 2.7
UniRef50_A7D078 Cluster: RNA binding S1 domain protein; n=1; Opi... 36 2.7
UniRef50_A7BUT9 Cluster: RNA binding S1 domain protein; n=1; Beg... 36 2.7
UniRef50_A6G1S3 Cluster: Putative uncharacterized protein; n=1; ... 36 2.7
UniRef50_A4BGP1 Cluster: Putative uncharacterized protein; n=1; ... 36 2.7
UniRef50_A3N254 Cluster: DNA uptake protein; n=1; Actinobacillus... 36 2.7
UniRef50_Q88LW4 Cluster: ComEA-related protein; n=4; Pseudomonas... 35 3.6
UniRef50_Q6MCK1 Cluster: Putative uncharacterized protein; n=2; ... 35 3.6
UniRef50_Q65UC7 Cluster: ComEA protein; n=1; Mannheimia succinic... 35 3.6
UniRef50_A5Z3H5 Cluster: Putative uncharacterized protein; n=1; ... 35 3.6
UniRef50_A5NV11 Cluster: RNA binding S1 domain protein; n=3; Bac... 35 3.6
UniRef50_Q27S72 Cluster: Aminopeptidase A; n=1; Hartmannella ver... 35 3.6
UniRef50_Q0V9G2 Cluster: LOC779477 protein; n=1; Xenopus tropica... 35 4.8
UniRef50_Q88VY0 Cluster: DNA-directed DNA polymerase III, alpha ... 35 4.8
UniRef50_Q835R3 Cluster: S1 RNA binding domain protein; n=15; Ba... 35 4.8
UniRef50_Q7NDT8 Cluster: Glr4144 protein; n=34; Bacteria|Rep: Gl... 35 4.8
UniRef50_Q3AT59 Cluster: Putative uncharacterized protein; n=1; ... 35 4.8
UniRef50_A7SH52 Cluster: Predicted protein; n=1; Nematostella ve... 35 4.8
UniRef50_Q4SL46 Cluster: Chromosome 17 SCAF14563, whole genome s... 34 6.3
UniRef50_Q9HZ87 Cluster: Putative uncharacterized protein; n=6; ... 34 6.3
UniRef50_Q62JT5 Cluster: Conserved domain protein; n=44; Burkhol... 34 6.3
UniRef50_Q1VYR6 Cluster: Putative uncharacterized protein; n=1; ... 34 6.3
UniRef50_Q1LQG1 Cluster: Helix-hairpin-helix DNA-binding, class ... 34 6.3
UniRef50_Q1INK1 Cluster: Putative uncharacterized protein; n=1; ... 34 6.3
UniRef50_Q12AI9 Cluster: RNA binding S1; n=3; Comamonadaceae|Rep... 34 6.3
UniRef50_Q01R15 Cluster: RNA binding S1 domain protein; n=4; Bac... 34 6.3
UniRef50_A6LJP5 Cluster: RNA binding S1 domain protein; n=1; The... 34 6.3
UniRef50_A4SW63 Cluster: Helix-hairpin-helix motif precursor; n=... 34 6.3
UniRef50_A2TRA9 Cluster: Putative RNA binding protein with S1 RN... 34 6.3
UniRef50_Q6BZG0 Cluster: Transcription elongation factor SPT5; n... 34 6.3
UniRef50_Q31PX0 Cluster: Putative uncharacterized protein; n=2; ... 34 8.3
UniRef50_Q2L2R7 Cluster: Putative exported protein precursor; n=... 34 8.3
UniRef50_Q13DT2 Cluster: Putative uncharacterized protein; n=4; ... 34 8.3
UniRef50_P96626 Cluster: YdcI protein; n=1; Bacillus subtilis|Re... 34 8.3
UniRef50_A6LGB3 Cluster: Putative uncharacterized protein; n=2; ... 34 8.3
UniRef50_Q45388 Cluster: Protein tex; n=331; cellular organisms|... 34 8.3
UniRef50_Q6CC84 Cluster: Transcription elongation factor SPT5; n... 34 8.3
>UniRef50_UPI0000D56273 Cluster: PREDICTED: hypothetical protein;
n=1; Tribolium castaneum|Rep: PREDICTED: hypothetical
protein - Tribolium castaneum
Length = 547
Score = 201 bits (491), Expect = 2e-50
Identities = 98/176 (55%), Positives = 134/176 (76%), Gaps = 6/176 (3%)
Frame = +3
Query: 369 NKSSLSHTFSLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDD 548
N ++LSHTF+L + + EL+NIN A+EE+LMTLPGV+R+ AR IV HR+ IGRF++V+D
Sbjct: 32 NHANLSHTFTLNDNHDKVELLNINQASEEELMTLPGVSRETARSIVEHRKAIGRFRKVED 91
Query: 549 LALVSGIGADKLELLRPEICTHTRKQLSRASSCAHSLDSIR------LPSESRLCSINSS 710
LALV GIGADKLELLRPEIC +R+ LS ASS A S DS+R +RL ++N +
Sbjct: 92 LALVRGIGADKLELLRPEICVSSRRNLSCASSRAQSYDSLRSADSRLTVKSNRLVNVNKA 151
Query: 711 SVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSLE 878
SVF+LQCV G+ QEIAA IV YR++KGPFK ++DL+K++ +D +RL + + L++E
Sbjct: 152 SVFELQCVHGITQEIAAAIVHYRDKKGPFKQVEDLLKIKSIDRIRLDNISRFLTVE 207
Score = 46.8 bits (106), Expect = 0.001
Identities = 22/69 (31%), Positives = 43/69 (62%)
Frame = +3
Query: 690 LCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHL 869
L +IN +S +L +PG+++E A +IV++R G F+ ++DL VRG+ +L ++ +
Sbjct: 51 LLNINQASEEELMTLPGVSRETARSIVEHRKAIGRFRKVEDLALVRGIGADKLELLRPEI 110
Query: 870 SLELRKSES 896
+ R++ S
Sbjct: 111 CVSSRRNLS 119
>UniRef50_Q9C0F7 Cluster: KIAA1706 protein; n=29; Euteleostomi|Rep:
KIAA1706 protein - Homo sapiens (Human)
Length = 573
Score = 125 bits (302), Expect = 2e-27
Identities = 75/180 (41%), Positives = 111/180 (61%), Gaps = 15/180 (8%)
Frame = +3
Query: 423 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 602
E +NIN ATEE+LMTLPGV R +AR IV +R+ IG FK+V+DLALVSG+GA KLE ++ E
Sbjct: 42 ERLNINTATEEELMTLPGVTRAVARSIVEYREYIGGFKKVEDLALVSGVGATKLEQVKFE 101
Query: 603 ICTHTRKQLSRASSCAHSLDSIR---------------LPSESRLCSINSSSVFQLQCVP 737
IC S+ SS HS S+R +P R+ +IN+++ QL V
Sbjct: 102 ICVS-----SKGSSAQHSPSSLRRDLLAEQQPHHLATAVPLTPRV-NINTATPAQLMSVR 155
Query: 738 GLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSLELRKSESVQHLTNG 917
GL++++A +IVD+R GPF+S++DL+++ G++ L ++ + E + S TNG
Sbjct: 156 GLSEKMALSIVDFRREHGPFRSVEDLVRMDGINAAFLDRIRHQVFAERSRPPSTH--TNG 213
>UniRef50_Q4RIW6 Cluster: Chromosome undetermined SCAF15041, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF15041,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 433
Score = 113 bits (273), Expect = 6e-24
Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 6/166 (3%)
Frame = +3
Query: 423 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 602
E +NINAATEE+LMTLPGV R +A+ IV +R IG F++V+DLALVSG+GA KLE ++PE
Sbjct: 40 ERLNINAATEEELMTLPGVGRAVAQNIVEYRDRIGGFRKVEDLALVSGVGATKLEAVKPE 99
Query: 603 ICTHTRKQLSRASSCAHSLDSIRLPSESRLC---SINSSSVFQLQCVPGLNQEIAANIVD 773
IC SR SS HS S+R + C +IN+++ QL + G+ +++AA+IV
Sbjct: 100 ICVS-----SRTSSSQHSPASLRRDPDLHPCTGVNINTATPAQLMSIRGITEKVAASIVA 154
Query: 774 YR---NRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSLELRKSESVQ 902
+R R G +++ + + D++ + + + EL + +S Q
Sbjct: 155 FRAHTARSGAWRTWSGIKLLAVQDLLEREALDKFCA-ELNRGDSGQ 199
>UniRef50_UPI0000584CEA Cluster: PREDICTED: similar to KIAA1706
protein; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to KIAA1706 protein -
Strongylocentrotus purpuratus
Length = 567
Score = 111 bits (267), Expect = 3e-23
Identities = 68/203 (33%), Positives = 111/203 (54%), Gaps = 7/203 (3%)
Frame = +3
Query: 363 KLNKSSLSHTFSLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRV 542
K + +S T+S + +NIN ATEE+LMTLP + R +AR I+++R IG F++
Sbjct: 29 KRPRRDISATYSANDFVMTLDQLNINQATEEELMTLPTITRNIARNIIQYRNHIGGFRKA 88
Query: 543 DDLALVSGIGADKLELLRPEI-C------THTRKQLSRASSCAHSLDSIRLPSESRLCSI 701
+DLALVSG+GA+KL L+R EI C +++ SR SS H L+++ S +
Sbjct: 89 EDLALVSGVGANKLALIRMEIYCGKYDPGSYSTPSSSRKSS--HRLNALLKQSSEIKVDV 146
Query: 702 NSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSLEL 881
N ++ L V G+ ++A IV+YRN G +K L D+ KV + ++ L+++
Sbjct: 147 NKATATDLCKVSGIGTDLAQRIVEYRNEVGQYKFLTDVSKVPEIGTYYFEKIRHCLTIDD 206
Query: 882 RKSESVQHLTNGHVNGWNDDXMP 950
+S T + ++ D +P
Sbjct: 207 NESTCSTSTTVSIIEDFSSDSLP 229
>UniRef50_A6LNS9 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein; n=1; Thermosipho
melanesiensis BI429|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein - Thermosipho
melanesiensis BI429
Length = 184
Score = 90.6 bits (215), Expect = 7e-17
Identities = 50/151 (33%), Positives = 88/151 (58%)
Frame = +3
Query: 423 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 602
++++IN+AT EQL++LPG+ A+ I+ +R+ +G F +DDL VSGIG L+ ++P
Sbjct: 44 QIIDINSATFEQLVSLPGIGPTKAKSIINYREKVGEFLSIDDLLNVSGIGPSTLKKIKPF 103
Query: 603 ICTHTRKQLSRASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRN 782
I T ++ + S SE +IN++SV +L +PG+ + A I+++R
Sbjct: 104 IKIKTANVITNSPS----------GSEDVKININNASVEELMKLPGIGKVKAQEIIEFRK 153
Query: 783 RKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
+ G +S +DL+KV+G+ L +K + L
Sbjct: 154 KFGNVQSFEDLLKVKGIGKKTLEKIKPFIEL 184
Score = 54.0 bits (124), Expect = 7e-06
Identities = 28/78 (35%), Positives = 43/78 (55%)
Frame = +3
Query: 372 KSSLSHTFSLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDL 551
K ++ + PS +NIN A+ E+LM LPG+ + A+EI+ R+ G + +DL
Sbjct: 105 KIKTANVITNSPSGSEDVKININNASVEELMKLPGIGKVKAQEIIEFRKKFGNVQSFEDL 164
Query: 552 ALVSGIGADKLELLRPEI 605
V GIG LE ++P I
Sbjct: 165 LKVKGIGKKTLEKIKPFI 182
Score = 46.4 bits (105), Expect = 0.001
Identities = 21/64 (32%), Positives = 38/64 (59%)
Frame = +3
Query: 687 RLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQH 866
++ INS++ QL +PG+ A +I++YR + G F S+DDL+ V G+ L +K
Sbjct: 44 QIIDINSATFEQLVSLPGIGPTKAKSIINYREKVGEFLSIDDLLNVSGIGPSTLKKIKPF 103
Query: 867 LSLE 878
+ ++
Sbjct: 104 IKIK 107
>UniRef50_A7HNQ6 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein; n=1;
Fervidobacterium nodosum Rt17-B1|Rep: Competence protein
ComEA helix-hairpin-helix repeat protein -
Fervidobacterium nodosum Rt17-B1
Length = 227
Score = 76.6 bits (180), Expect = 1e-12
Identities = 46/159 (28%), Positives = 87/159 (54%), Gaps = 9/159 (5%)
Frame = +3
Query: 426 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
++++N A+ EQL TLPG+ AR IV +R+ F + +DL VSGIG E ++ I
Sbjct: 69 IIDLNTASVEQLQTLPGIGPSKARAIVEYREK-QPFSKPEDLMNVSGIGPKTFEKIKDRI 127
Query: 606 CTHTRKQLSRASSCAHSLDSIRLPSESR---------LCSINSSSVFQLQCVPGLNQEIA 758
T ++ A++ + S ++S+ +IN++++ +LQ +PG+ A
Sbjct: 128 TVSTVNTVNMANNTPSTTQSTTQNNQSQNGNKNISPEKININTANLEELQKLPGIGPSKA 187
Query: 759 ANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
I+DYR + G FKS++++ V+G+ +K+ +++
Sbjct: 188 QAIIDYREKVGKFKSIEEIKNVKGIGEKTYEKLKELITI 226
Score = 53.2 bits (122), Expect = 1e-05
Identities = 23/59 (38%), Positives = 37/59 (62%)
Frame = +3
Query: 420 PELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 596
PE +NIN A E+L LPG+ A+ I+ +R+ +G+FK ++++ V GIG E L+
Sbjct: 163 PEKININTANLEELQKLPGIGPSKAQAIIDYREKVGKFKSIEEIKNVKGIGEKTYEKLK 221
Score = 42.3 bits (95), Expect = 0.024
Identities = 22/64 (34%), Positives = 36/64 (56%)
Frame = +3
Query: 684 SRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQ 863
S + +N++SV QLQ +PG+ A IV+YR K PF +DL+ V G+ +K
Sbjct: 67 SPIIDLNTASVEQLQTLPGIGPSKARAIVEYR-EKQPFSKPEDLMNVSGIGPKTFEKIKD 125
Query: 864 HLSL 875
+++
Sbjct: 126 RITV 129
>UniRef50_Q9X0E2 Cluster: ComEA protein-related protein; n=2;
Thermotoga|Rep: ComEA protein-related protein -
Thermotoga maritima
Length = 181
Score = 67.7 bits (158), Expect = 6e-10
Identities = 42/144 (29%), Positives = 75/144 (52%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEIC 608
+ +N A+ E LM++PG+ A+ I+ +R+ G F V++L VSGIG LE + +
Sbjct: 47 VELNTASLEDLMSIPGIGPVKAQRIIDYRESHGGFSSVEELKNVSGIGEKTLEKISRYVT 106
Query: 609 THTRKQLSRASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRK 788
+Q + E ++N++SV +L+ +P + + A IV+YR +
Sbjct: 107 VEGVEQ--------------HIKREVTKLNVNTASVEELETLPYIGEVKAKAIVEYREKN 152
Query: 789 GPFKSLDDLIKVRGMDIVRLSTVK 860
GPF+S +DL+ V G+ L ++
Sbjct: 153 GPFRSPEDLLDVPGIGEKTLEKIR 176
Score = 47.6 bits (108), Expect = 6e-04
Identities = 24/59 (40%), Positives = 36/59 (61%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
+N+N A+ E+L TLP + A+ IV +R+ G F+ +DL V GIG LE +R +I
Sbjct: 121 LNVNTASVEELETLPYIGEVKAKAIVEYREKNGPFRSPEDLLDVPGIGEKTLEKIRGKI 179
Score = 43.2 bits (97), Expect = 0.014
Identities = 21/76 (27%), Positives = 42/76 (55%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSLE 878
+N++S+ L +PG+ A I+DYR G F S+++L V G+ L + +++++E
Sbjct: 49 LNTASLEDLMSIPGIGPVKAQRIIDYRESHGGFSSVEELKNVSGIGEKTLEKISRYVTVE 108
Query: 879 LRKSESVQHLTNGHVN 926
+ + +T +VN
Sbjct: 109 GVEQHIKREVTKLNVN 124
>UniRef50_Q67SA3 Cluster: Putative DNA-binding protein; n=1;
Symbiobacterium thermophilum|Rep: Putative DNA-binding
protein - Symbiobacterium thermophilum
Length = 230
Score = 59.3 bits (137), Expect = 2e-07
Identities = 29/60 (48%), Positives = 40/60 (66%)
Frame = +3
Query: 426 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
L+NIN A + +L T+PG+ LAR I+ +R G F+ VDDL VSGIG+ LE +RP +
Sbjct: 169 LVNINTAGQAELETVPGIGPALARAIITYRTEHGPFQSVDDLINVSGIGSKTLEKIRPYV 228
Score = 50.8 bits (116), Expect = 7e-05
Identities = 22/61 (36%), Positives = 38/61 (62%)
Frame = +3
Query: 690 LCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHL 869
L +IN++ +L+ VPG+ +A I+ YR GPF+S+DDLI V G+ L ++ ++
Sbjct: 169 LVNINTAGQAELETVPGIGPALARAIITYRTEHGPFQSVDDLINVSGIGSKTLEKIRPYV 228
Query: 870 S 872
+
Sbjct: 229 T 229
>UniRef50_Q1D6Q9 Cluster: ComE protein; n=2; Cystobacterineae|Rep:
ComE protein - Myxococcus xanthus (strain DK 1622)
Length = 138
Score = 58.8 bits (136), Expect = 3e-07
Identities = 28/56 (50%), Positives = 39/56 (69%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 596
+++N+ATEE+L LPGV R LAR +V R+ G FK DD+ V G+G+ KL+ LR
Sbjct: 68 LDLNSATEEELALLPGVGRALARSLVEAREEQGGFKSWDDVDAVRGVGSAKLQTLR 123
Score = 44.8 bits (101), Expect = 0.004
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +3
Query: 687 RLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQH 866
R +NS++ +L +PG+ + +A ++V+ R +G FKS DD+ VRG+ +L T++
Sbjct: 66 RPLDLNSATEEELALLPGVGRALARSLVEAREEQGGFKSWDDVDAVRGVGSAKLQTLRAA 125
Query: 867 LSL 875
+L
Sbjct: 126 TAL 128
>UniRef50_Q8XIJ9 Cluster: ComE operon protein; n=3; Clostridium
perfringens|Rep: ComE operon protein - Clostridium
perfringens
Length = 260
Score = 58.0 bits (134), Expect = 4e-07
Identities = 28/60 (46%), Positives = 40/60 (66%)
Frame = +3
Query: 426 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
++NIN A++E LMTL G+ A+ I+ +R IG FK VDD+ VSGIG LE ++ +I
Sbjct: 198 VININTASKETLMTLNGIGESKAQAIIDYRDEIGGFKSVDDITNVSGIGEKTLEKIKDKI 257
Score = 47.6 bits (108), Expect = 6e-04
Identities = 23/67 (34%), Positives = 40/67 (59%)
Frame = +3
Query: 678 SESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTV 857
+ES + +IN++S L + G+ + A I+DYR+ G FKS+DD+ V G+ L +
Sbjct: 194 NESSVININTASKETLMTLNGIGESKAQAIIDYRDEIGGFKSVDDITNVSGIGEKTLEKI 253
Query: 858 KQHLSLE 878
K +S++
Sbjct: 254 KDKISIK 260
>UniRef50_Q5KWY4 Cluster: Late competence protein; n=2;
Geobacillus|Rep: Late competence protein - Geobacillus
kaustophilus
Length = 207
Score = 58.0 bits (134), Expect = 4e-07
Identities = 27/55 (49%), Positives = 38/55 (69%)
Frame = +3
Query: 435 INAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 599
+N ATEE+LM LPG+ A+ I+ +R+ G F+RV+DL V+GIG LE L+P
Sbjct: 148 VNTATEEELMQLPGIGPAKAKAIIAYREEHGPFQRVEDLLNVTGIGEKTLEKLKP 202
Score = 40.3 bits (90), Expect = 0.096
Identities = 18/58 (31%), Positives = 34/58 (58%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHL 869
++N+++ +L +PG+ A I+ YR GPF+ ++DL+ V G+ L +K +L
Sbjct: 147 AVNTATEEELMQLPGIGPAKAKAIIAYREEHGPFQRVEDLLNVTGIGEKTLEKLKPYL 204
>UniRef50_Q3XYU3 Cluster: Competence protein ComEA
helix-hairpin-helix region; n=1; Enterococcus faecium
DO|Rep: Competence protein ComEA helix-hairpin-helix
region - Enterococcus faecium DO
Length = 242
Score = 57.6 bits (133), Expect = 6e-07
Identities = 26/65 (40%), Positives = 41/65 (63%)
Frame = +3
Query: 402 PPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADK 581
P ++ P +NIN AT +L +PG+ A+EI+R R+ G F++V+DL +SGIG
Sbjct: 172 PTADSEPPKININTATPSELQQIPGIGSVKAQEIIRFREENGSFQKVEDLQEISGIGEKT 231
Query: 582 LELLR 596
+E L+
Sbjct: 232 VEKLK 236
Score = 38.3 bits (85), Expect = 0.39
Identities = 17/67 (25%), Positives = 38/67 (56%)
Frame = +3
Query: 678 SESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTV 857
SE +IN+++ +LQ +PG+ A I+ +R G F+ ++DL ++ G+ + +
Sbjct: 176 SEPPKININTATPSELQQIPGIGSVKAQEIIRFREENGSFQKVEDLQEISGIGEKTVEKL 235
Query: 858 KQHLSLE 878
K ++++
Sbjct: 236 KNFVTIK 242
>UniRef50_Q6F851 Cluster: Putative DNA uptake protein and/or related
DNA-binding protein; n=1; Acinetobacter sp. ADP1|Rep:
Putative DNA uptake protein and/or related DNA-binding
protein - Acinetobacter sp. (strain ADP1)
Length = 128
Score = 57.2 bits (132), Expect = 8e-07
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Frame = +3
Query: 363 KLNKSSLSHTFSLPPSEEYPEL-MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKR 539
+LN S+ H+ S P + + +NIN+AT ++L L GV + A IV +RQ G+F
Sbjct: 45 RLNSSASHHSLSKPTQQSGTGVKVNINSATAKELQQLHGVGEKKALAIVEYRQQYGKFAS 104
Query: 540 VDDLALVSGIGADKLELLRPEI 605
VDDL V GIG +E R +
Sbjct: 105 VDDLQKVKGIGPKFIEKNRDRL 126
Score = 43.6 bits (98), Expect = 0.010
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +3
Query: 636 ASSCAHSLDSIRLPSESRL-CSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDD 812
+S+ HSL S + + +INS++ +LQ + G+ ++ A IV+YR + G F S+DD
Sbjct: 48 SSASHHSLSKPTQQSGTGVKVNINSATAKELQQLHGVGEKKALAIVEYRQQYGKFASVDD 107
Query: 813 LIKVRGM 833
L KV+G+
Sbjct: 108 LQKVKGI 114
>UniRef50_A3XGR6 Cluster: Putative uncharacterized protein; n=1;
Leeuwenhoekiella blandensis MED217|Rep: Putative
uncharacterized protein - Leeuwenhoekiella blandensis
MED217
Length = 290
Score = 57.2 bits (132), Expect = 8e-07
Identities = 36/153 (23%), Positives = 76/153 (49%)
Frame = +3
Query: 414 EYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELL 593
E + ++N A+ ++LM + ++ +LA+ I+ +R+ +G F + L V G+ + ++ L
Sbjct: 153 EKAPVSDLNKASFQELMAVSDISEELAKRILSYRKRLGGFLEDNQLYDVYGLSSAQVRAL 212
Query: 594 RPEICTHTRKQLSRASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVD 773
+ T+ + + + +N+++ L +P + EIA +I+D
Sbjct: 213 KTHFTVLTKPDIEKLN-------------------VNTANASDLATIPYITFEIARDIID 253
Query: 774 YRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLS 872
YR +LDDL+K+ G+ +L +K +LS
Sbjct: 254 YRTLHEGVSNLDDLLKIDGITAYKLDRIKLYLS 286
Score = 43.6 bits (98), Expect = 0.010
Identities = 20/64 (31%), Positives = 37/64 (57%)
Frame = +3
Query: 423 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 602
E +N+N A L T+P + ++AR+I+ +R + +DDL + GI A KL+ ++
Sbjct: 225 EKLNVNTANASDLATIPYITFEIARDIIDYRTLHEGVSNLDDLLKIDGITAYKLDRIKLY 284
Query: 603 ICTH 614
+ T+
Sbjct: 285 LSTN 288
Score = 43.2 bits (97), Expect = 0.014
Identities = 36/159 (22%), Positives = 75/159 (47%), Gaps = 4/159 (2%)
Frame = +3
Query: 411 EEYPEL--MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKL 584
EE P++ N N T+ + TL G++ + +++R R+ +D V+G+ L
Sbjct: 67 EEKPKIYPFNPNYITDYKGYTL-GMSPEEIDKLLRFREKNEWINSAEDFQKVTGVSDSLL 125
Query: 585 ELLRP--EICTHTRKQLSRASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIA 758
+L P + K+ + S+ ++ ++ + +N +S +L V +++E+A
Sbjct: 126 AVLSPYFKFPDWVTKREQKPSTKKRDVE------KAPVSDLNKASFQELMAVSDISEELA 179
Query: 759 ANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
I+ YR R G F + L V G+ ++ +K H ++
Sbjct: 180 KRILSYRKRLGGFLEDNQLYDVYGLSSAQVRALKTHFTV 218
>UniRef50_A5D3Z2 Cluster: Hypothetical membrane protein; n=1;
Pelotomaculum thermopropionicum SI|Rep: Hypothetical
membrane protein - Pelotomaculum thermopropionicum SI
Length = 208
Score = 56.8 bits (131), Expect = 1e-06
Identities = 27/64 (42%), Positives = 42/64 (65%)
Frame = +3
Query: 423 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 602
+L+NIN A + QL TLPG+ LA+ I+++R+ G FK +++L VSGIG E L+ +
Sbjct: 145 QLVNINTADQGQLDTLPGIGPALAQRIIQYRESNGPFKTIEELKNVSGIGDKNFENLKDK 204
Query: 603 ICTH 614
I +
Sbjct: 205 ITVY 208
Score = 46.8 bits (106), Expect = 0.001
Identities = 20/64 (31%), Positives = 37/64 (57%)
Frame = +3
Query: 684 SRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQ 863
S+L +IN++ QL +PG+ +A I+ YR GPFK++++L V G+ +K
Sbjct: 144 SQLVNINTADQGQLDTLPGIGPALAQRIIQYRESNGPFKTIEELKNVSGIGDKNFENLKD 203
Query: 864 HLSL 875
+++
Sbjct: 204 KITV 207
>UniRef50_A3IF87 Cluster: Competence protein comEA; n=1; Bacillus
sp. B14905|Rep: Competence protein comEA - Bacillus sp.
B14905
Length = 211
Score = 56.8 bits (131), Expect = 1e-06
Identities = 32/80 (40%), Positives = 44/80 (55%)
Frame = +3
Query: 366 LNKSSLSHTFSLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVD 545
L +S + S SE + +NIN A E L TLPG+ A+ I+ +R+ GRF+ +D
Sbjct: 129 LEDASTNLLISPIESENKDQKININIADTETLATLPGIGPSKAQSILSYREENGRFQTID 188
Query: 546 DLALVSGIGADKLELLRPEI 605
DL VSGIG E L+ I
Sbjct: 189 DLRNVSGIGEKTFEKLKDSI 208
Score = 37.1 bits (82), Expect = 0.89
Identities = 18/74 (24%), Positives = 37/74 (50%)
Frame = +3
Query: 657 LDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMD 836
+ I ++ + +IN + L +PG+ A +I+ YR G F+++DDL V G+
Sbjct: 138 ISPIESENKDQKININIADTETLATLPGIGPSKAQSILSYREENGRFQTIDDLRNVSGIG 197
Query: 837 IVRLSTVKQHLSLE 878
+K ++++
Sbjct: 198 EKTFEKLKDSITVK 211
>UniRef50_Q1PW28 Cluster: Putative uncharacterized protein; n=1;
Candidatus Kuenenia stuttgartiensis|Rep: Putative
uncharacterized protein - Candidatus Kuenenia
stuttgartiensis
Length = 112
Score = 56.4 bits (130), Expect = 1e-06
Identities = 27/53 (50%), Positives = 33/53 (62%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
+NIN ATE QL LPG+ +LA+EIV HR IG FK D+ V G+ K E
Sbjct: 39 VNINTATEAQLAMLPGIGEKLAKEIVAHRTKIGPFKTTGDIIKVKGLKDKKFE 91
Score = 50.0 bits (114), Expect = 1e-04
Identities = 22/61 (36%), Positives = 39/61 (63%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
+IN+++ QL +PG+ +++A IV +R + GPFK+ D+IKV+G+ + K + L
Sbjct: 40 NINTATEAQLAMLPGIGEKLAKEIVAHRTKIGPFKTTGDIIKVKGLKDKKFEKFKDFIVL 99
Query: 876 E 878
E
Sbjct: 100 E 100
>UniRef50_Q831Q1 Cluster: Competence protein comEA; n=1;
Enterococcus faecalis|Rep: Competence protein comEA -
Enterococcus faecalis (Streptococcus faecalis)
Length = 214
Score = 55.6 bits (128), Expect = 2e-06
Identities = 27/67 (40%), Positives = 40/67 (59%)
Frame = +3
Query: 396 SLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGA 575
S P + E +N+N ATE +L T+ G+ + A+EI+R R G FK V++L V GIG
Sbjct: 141 SAPAQQNQEEKINLNTATEAELQTISGIGAKKAQEIIRFRDEQGPFKTVEELKNVPGIGE 200
Query: 576 DKLELLR 596
+E L+
Sbjct: 201 KTVERLK 207
Score = 40.7 bits (91), Expect = 0.073
Identities = 32/154 (20%), Positives = 79/154 (51%), Gaps = 10/154 (6%)
Frame = +3
Query: 444 ATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEICTHTRK 623
AT+E+ T+ V+ + A ++ Q+ + + D LAL G+ +++ + + +
Sbjct: 60 ATKERAETMIYVDIKGAVKVPGIYQLKNQQRIWDALALAGGV-SEEADTTQVNYAQKVKD 118
Query: 624 QL-----SRASSCAHSLDSIR-----LPSESRLCSINSSSVFQLQCVPGLNQEIAANIVD 773
Q+ + A SL++++ ++ ++N+++ +LQ + G+ + A I+
Sbjct: 119 QMIIYVPKKGEPVAQSLETLQESAPAQQNQEEKINLNTATEAELQTISGIGAKKAQEIIR 178
Query: 774 YRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
+R+ +GPFK++++L V G+ + +K L++
Sbjct: 179 FRDEQGPFKTVEELKNVPGIGEKTVERLKDMLTV 212
>UniRef50_Q0EYL1 Cluster: Late competence protein required for DNA
binding and uptake; n=1; Mariprofundus ferrooxydans
PV-1|Rep: Late competence protein required for DNA
binding and uptake - Mariprofundus ferrooxydans PV-1
Length = 96
Score = 55.6 bits (128), Expect = 2e-06
Identities = 27/59 (45%), Positives = 38/59 (64%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
+++N AT EQL T+ G+ ++ A EIV +R+ G FK VD L V GIG KLE +R +
Sbjct: 28 VDVNTATVEQLQTVNGIGKKTAAEIVAYREAHGPFKSVDALVHVKGIGEKKLEQIRGSV 86
Score = 51.2 bits (117), Expect = 5e-05
Identities = 23/54 (42%), Positives = 37/54 (68%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVK 860
+N+++V QLQ V G+ ++ AA IV YR GPFKS+D L+ V+G+ +L ++
Sbjct: 30 VNTATVEQLQTVNGIGKKTAAEIVAYREAHGPFKSVDALVHVKGIGEKKLEQIR 83
>UniRef50_A6L0G4 Cluster: Putative uncharacterized protein; n=1;
Bacteroides vulgatus ATCC 8482|Rep: Putative
uncharacterized protein - Bacteroides vulgatus (strain
ATCC 8482 / DSM 1447 / NCTC 11154)
Length = 300
Score = 55.6 bits (128), Expect = 2e-06
Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 6/161 (3%)
Frame = +3
Query: 372 KSSLSHTFSLPPSEEYP-ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDD 548
K SL +++ P E + N+A + + G+ +A I+++R+ G+F+ DD
Sbjct: 63 KESLRYSYDKPKRREVVLAAFDPNSADSIEFLQR-GLPPFIAHTILQYRRAGGKFRTADD 121
Query: 549 LALVSGIGADKLELLRPEIC---THTRKQ--LSRASSCAHSLDSIRLPSESRLCSINSSS 713
+ V G+ ++K +L+P I RKQ L ++ E L +N +
Sbjct: 122 FSRVYGLSSEKFNMLKPYIQISEAFRRKQDTLHFIKKAEKDTLAVYKYPEGTLVDLNEAD 181
Query: 714 VFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMD 836
+L+ +PG+ IA IV YR R G F + L +V +D
Sbjct: 182 TTELKKIPGIGSGIARMIVAYRKRLGGFYDMAQLKEVNYVD 222
>UniRef50_Q70T35 Cluster: ComEA protein; n=2; Bacillus|Rep: ComEA
protein - Bacillus megaterium
Length = 214
Score = 55.2 bits (127), Expect = 3e-06
Identities = 32/77 (41%), Positives = 45/77 (58%)
Frame = +3
Query: 375 SSLSHTFSLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLA 554
S +S SL S + P L+NIN A ++L TL G+ A IV +R+ G F+ V+DL
Sbjct: 136 SPVSLISSLGTSNDQP-LVNINTANTDELQTLNGIGPSKASAIVSYREENGLFQTVEDLG 194
Query: 555 LVSGIGADKLELLRPEI 605
VSGIG LE ++ +I
Sbjct: 195 QVSGIGEKSLEKIKAQI 211
Score = 43.2 bits (97), Expect = 0.014
Identities = 22/80 (27%), Positives = 45/80 (56%)
Frame = +3
Query: 639 SSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLI 818
SS + S+ ++ L +IN+++ +LQ + G+ A+ IV YR G F++++DL
Sbjct: 135 SSPVSLISSLGTSNDQPLVNINTANTDELQTLNGIGPSKASAIVSYREENGLFQTVEDLG 194
Query: 819 KVRGMDIVRLSTVKQHLSLE 878
+V G+ L +K ++++
Sbjct: 195 QVSGIGEKSLEKIKAQITVQ 214
>UniRef50_Q182I3 Cluster: Putative competence protein precursor;
n=1; Clostridium difficile 630|Rep: Putative competence
protein precursor - Clostridium difficile (strain 630)
Length = 234
Score = 54.8 bits (126), Expect = 4e-06
Identities = 25/60 (41%), Positives = 40/60 (66%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEIC 608
+NIN AT E+L +LPGV A +I++HR+ G+F ++++ V+GIG K E ++ IC
Sbjct: 173 VNINVATIEELDSLPGVGEATANKILQHREENGQFSSIEEIKNVNGIGDKKYENIKDLIC 232
>UniRef50_Q8FN96 Cluster: Putative uncharacterized protein; n=1;
Corynebacterium efficiens|Rep: Putative uncharacterized
protein - Corynebacterium efficiens
Length = 255
Score = 54.4 bits (125), Expect = 6e-06
Identities = 25/52 (48%), Positives = 34/52 (65%)
Frame = +3
Query: 426 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADK 581
L+++N AT +L TLPGV + A+ I++HR+ G F VDDL V GIG K
Sbjct: 194 LISLNTATAAELQTLPGVGEKTAQAIIQHREANGGFSAVDDLLEVKGIGPSK 245
Score = 46.4 bits (105), Expect = 0.001
Identities = 19/65 (29%), Positives = 41/65 (63%)
Frame = +3
Query: 681 ESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVK 860
E L S+N+++ +LQ +PG+ ++ A I+ +R G F ++DDL++V+G+ + + +
Sbjct: 191 EGGLISLNTATAAELQTLPGVGEKTAQAIIQHREANGGFSAVDDLLEVKGIGPSKFAQIS 250
Query: 861 QHLSL 875
++L
Sbjct: 251 GAVTL 255
>UniRef50_Q2ACP1 Cluster: Competence protein ComEA
helix-hairpin-helix region; n=1; Halothermothrix orenii
H 168|Rep: Competence protein ComEA helix-hairpin-helix
region - Halothermothrix orenii H 168
Length = 245
Score = 54.4 bits (125), Expect = 6e-06
Identities = 26/66 (39%), Positives = 41/66 (62%)
Frame = +3
Query: 408 SEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
+++YPE +N+N +++EQL LPG+ AR IV++R+ G F L VSGIG E
Sbjct: 177 TDKYPEKINLNRSSQEQLQKLPGIGPSKARSIVKYREENGFFTDKAQLLNVSGIGEKTYE 236
Query: 588 LLRPEI 605
L+ ++
Sbjct: 237 KLKDKV 242
Score = 36.7 bits (81), Expect = 1.2
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
++N SS QLQ +PG+ A +IV YR G F L+ V G+ +K +SL
Sbjct: 185 NLNRSSQEQLQKLPGIGPSKARSIVKYREENGFFTDKAQLLNVSGIGEKTYEKLKDKVSL 244
>UniRef50_Q03JE8 Cluster: DNA uptake protein or related DNA-binding
protein; n=3; Streptococcus thermophilus|Rep: DNA uptake
protein or related DNA-binding protein - Streptococcus
thermophilus (strain ATCC BAA-491 / LMD-9)
Length = 231
Score = 54.4 bits (125), Expect = 6e-06
Identities = 24/59 (40%), Positives = 38/59 (64%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
+N+N AT EQL T+ G+ + A +++ +R+ G F+ VDDL VSGIG L+ +R +
Sbjct: 170 INLNTATSEQLQTISGIGAKRAEDVIAYRESHGGFQSVDDLKNVSGIGDKTLDKIRESL 228
Score = 40.3 bits (90), Expect = 0.096
Identities = 18/58 (31%), Positives = 35/58 (60%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHL 869
++N+++ QLQ + G+ + A +++ YR G F+S+DDL V G+ L +++ L
Sbjct: 171 NLNTATSEQLQTISGIGAKRAEDVIAYRESHGGFQSVDDLKNVSGIGDKTLDKIRESL 228
>UniRef50_A5FIK8 Cluster: Putative uncharacterized protein; n=3;
Flavobacteriales|Rep: Putative uncharacterized protein -
Flavobacterium johnsoniae UW101
Length = 295
Score = 54.4 bits (125), Expect = 6e-06
Identities = 37/148 (25%), Positives = 67/148 (45%)
Frame = +3
Query: 426 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
L +IN A++E L+ + G+ L+ I++ ++ +G F ++ L V G L PE+
Sbjct: 165 LTDINQASQEDLIKIYGIGEALSTRILKQKETLGGFVSMEQLTDVWG--------LSPEV 216
Query: 606 CTHTRKQLSRASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNR 785
LPS + IN +S+ +L P +A IV YR+
Sbjct: 217 IIELNNHFKAV-----------LPSNFKKIPINDASLKELSQFPYFKYALAKQIVTYRSM 265
Query: 786 KGPFKSLDDLIKVRGMDIVRLSTVKQHL 869
G F +++DL K++G + + + +L
Sbjct: 266 NGNFNNIEDLSKIKGFPVEKAKIISLYL 293
>UniRef50_A3DET3 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=1;
Clostridium thermocellum ATCC 27405|Rep: Competence
protein ComEA helix-hairpin-helix repeat protein
precursor - Clostridium thermocellum (strain ATCC 27405
/ DSM 1237)
Length = 296
Score = 54.4 bits (125), Expect = 6e-06
Identities = 24/56 (42%), Positives = 38/56 (67%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 596
+NIN AT E+L +LPG+ +A +IV +R+ G+FK ++D+ VSGIG K ++
Sbjct: 235 ININTATVEELDSLPGIGPAIAAKIVAYREQNGKFKSIEDIMNVSGIGQSKFNNIK 290
Score = 50.8 bits (116), Expect = 7e-05
Identities = 21/60 (35%), Positives = 40/60 (66%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
+IN+++V +L +PG+ IAA IV YR + G FKS++D++ V G+ + + +K +++
Sbjct: 236 NINTATVEELDSLPGIGPAIAAKIVAYREQNGKFKSIEDIMNVSGIGQSKFNNIKDFITV 295
>UniRef50_Q8A1M0 Cluster: Putative uncharacterized protein; n=5;
Bacteroides|Rep: Putative uncharacterized protein -
Bacteroides thetaiotaomicron
Length = 309
Score = 54.0 bits (124), Expect = 7e-06
Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 5/147 (3%)
Frame = +3
Query: 402 PPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADK 581
P E P + N A ++L G+ +A I+R+R+ GRF+R +D + G+ ++
Sbjct: 83 PKKEIRPAAFDPNTADSATFLSL-GLPTWMAGNILRYRRKQGRFRRPEDFRKIYGLTEEQ 141
Query: 582 LELLRPEIC---THTRKQLSR--ASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLN 746
L+P I T + SR D++ + +N + +L+ +PG+
Sbjct: 142 YRTLQPYIRIAETPVLQDTSRILVVQATAPYDTLMKYPPGTIIDLNQADTTELKKIPGIG 201
Query: 747 QEIAANIVDYRNRKGPFKSLDDLIKVR 827
IA +IV++R G F ++ L ++R
Sbjct: 202 SRIARSIVNHRRLLGGFYQIEQLGEIR 228
Score = 41.5 bits (93), Expect = 0.042
Identities = 19/59 (32%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Frame = +3
Query: 414 EYPE--LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKL 584
+YP ++++N A +L +PG+ ++AR IV HR+++G F +++ L + + A+KL
Sbjct: 177 KYPPGTIIDLNQADTTELKKIPGIGSRIARSIVNHRRLLGGFYQIEQLGEIR-LKAEKL 234
>UniRef50_Q0YG37 Cluster: Helix-hairpin-helix motif precursor; n=2;
Geobacter|Rep: Helix-hairpin-helix motif precursor -
Geobacter sp. FRC-32
Length = 170
Score = 53.6 bits (123), Expect = 1e-05
Identities = 39/166 (23%), Positives = 76/166 (45%)
Frame = +3
Query: 378 SLSHTFSLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLAL 557
S +H S Y +NIN A+ LPG+ + I++ R+ +GRF + D+
Sbjct: 18 SFTHVASAKVLRTYQGKLNINTASAADFARLPGIGNVIGFHIIKEREQLGRFSAIKDITS 77
Query: 558 VSGIGADKLELLRPEICTHTRKQLSRASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVP 737
V GI E ++ + L +R+ +N+ + L +P
Sbjct: 78 VKGIKPRVFETIKGHLTLTGENNL-----------QVRI-------DLNTITKPVLLGLP 119
Query: 738 GLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
G++ A +I+++R + PF S++DL+ V G++ R+ + + L++
Sbjct: 120 GMSAGEARSIINFRKNR-PFTSVEDLLLVPGINGKRMRELSEWLTV 164
>UniRef50_A4EC57 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 244
Score = 53.6 bits (123), Expect = 1e-05
Identities = 27/61 (44%), Positives = 36/61 (59%)
Frame = +3
Query: 426 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
L+NIN A+ +L TL G+ +A+ I+ R G F VDDL VSGIG KL ++ I
Sbjct: 183 LVNINTASAAELQTLSGIGPSMAQSIIDERTKNGAFASVDDLMRVSGIGEKKLAKIKDCI 242
Query: 606 C 608
C
Sbjct: 243 C 243
Score = 49.2 bits (112), Expect = 2e-04
Identities = 22/66 (33%), Positives = 42/66 (63%)
Frame = +3
Query: 663 SIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIV 842
S+ + + L +IN++S +LQ + G+ +A +I+D R + G F S+DDL++V G+
Sbjct: 174 SLGVSGATGLVNINTASAAELQTLSGIGPSMAQSIIDERTKNGAFASVDDLMRVSGIGEK 233
Query: 843 RLSTVK 860
+L+ +K
Sbjct: 234 KLAKIK 239
>UniRef50_Q15QY4 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=1;
Pseudoalteromonas atlantica T6c|Rep: Competence protein
ComEA helix-hairpin-helix repeat protein precursor -
Pseudoalteromonas atlantica (strain T6c / BAA-1087)
Length = 102
Score = 53.2 bits (122), Expect = 1e-05
Identities = 22/55 (40%), Positives = 37/55 (67%)
Frame = +3
Query: 408 SEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 572
+++ + +N+N AT EQL+TLPG+ ++ A I+ +R G+F ++ DL V GIG
Sbjct: 34 TQKKSQKINLNTATAEQLVTLPGIGKKKAAAIIAYRDKSGKFAKISDLTNVKGIG 88
Score = 42.7 bits (96), Expect = 0.018
Identities = 18/65 (27%), Positives = 40/65 (61%)
Frame = +3
Query: 681 ESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVK 860
+S+ ++N+++ QL +PG+ ++ AA I+ YR++ G F + DL V+G+ ++ +
Sbjct: 37 KSQKINLNTATAEQLVTLPGIGKKKAAAIIAYRDKSGKFAKISDLTNVKGIGKKMVAKLA 96
Query: 861 QHLSL 875
H+ +
Sbjct: 97 AHVQV 101
>UniRef50_A5UT74 Cluster: Helix-hairpin-helix motif precursor; n=2;
Roseiflexus|Rep: Helix-hairpin-helix motif precursor -
Roseiflexus sp. RS-1
Length = 220
Score = 53.2 bits (122), Expect = 1e-05
Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Frame = +3
Query: 537 RVDDLALVSGIGADKLELLRPEICTH-TRKQLSRASSCAHSLDSIRL-PSESR------- 689
R+ DL L +G AD ++ R + T Q R ++ + P+ES
Sbjct: 97 RIKDLVLAAGGFADDADIERINLAAPITDGQHVRVPWIGDGTSAVEITPAESPKGGNSGG 156
Query: 690 LCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
L +N ++V +L +PG+ +A IV++R R+GPF+S+DDL KV G+
Sbjct: 157 LLDLNRATVAELDALPGIGSVLANRIVEWREREGPFRSVDDLGKVEGI 204
Score = 49.2 bits (112), Expect = 2e-04
Identities = 26/58 (44%), Positives = 33/58 (56%)
Frame = +3
Query: 426 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 599
L+++N AT +L LPG+ LA IV R+ G F+ VDDL V GIG L L P
Sbjct: 157 LLDLNRATVAELDALPGIGSVLANRIVEWREREGPFRSVDDLGKVEGIGPALLAKLAP 214
>UniRef50_A4J7G9 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein; n=1;
Desulfotomaculum reducens MI-1|Rep: Competence protein
ComEA helix-hairpin-helix repeat protein -
Desulfotomaculum reducens MI-1
Length = 213
Score = 53.2 bits (122), Expect = 1e-05
Identities = 27/60 (45%), Positives = 38/60 (63%)
Frame = +3
Query: 426 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
L+NIN A ++L +LPG+ LA I++HR+ G F+ +DL VSGIG K E L+ I
Sbjct: 151 LVNINTAGPQELDSLPGIGPALAERIIQHREANGPFQCTEDLKNVSGIGDKKFEDLQHRI 210
Score = 40.7 bits (91), Expect = 0.073
Identities = 17/63 (26%), Positives = 35/63 (55%)
Frame = +3
Query: 690 LCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHL 869
L +IN++ +L +PG+ +A I+ +R GPF+ +DL V G+ + ++ +
Sbjct: 151 LVNINTAGPQELDSLPGIGPALAERIIQHREANGPFQCTEDLKNVSGIGDKKFEDLQHRI 210
Query: 870 SLE 878
+L+
Sbjct: 211 TLQ 213
>UniRef50_A4AT81 Cluster: Putative uncharacterized protein; n=1;
Flavobacteriales bacterium HTCC2170|Rep: Putative
uncharacterized protein - Flavobacteriales bacterium
HTCC2170
Length = 296
Score = 53.2 bits (122), Expect = 1e-05
Identities = 41/151 (27%), Positives = 75/151 (49%)
Frame = +3
Query: 423 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 602
E+ IN+ T E+L T+ G+ +L+ I++ R +G F + L V G L P
Sbjct: 165 EIKEINSVTAEELQTVSGIGDKLSNRIIKFRDRLGGFMVNEQLYDVYG--------LEPV 216
Query: 603 ICTHTRKQLSRASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRN 782
+ ++ L R + PS S++ IN++S ++ + L E+A+ IV+YR
Sbjct: 217 V---VKRALERFKVLSE-------PSISKI-DINTASAQEISKLIYLRYELASKIVEYRQ 265
Query: 783 RKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
G F S ++L + G +++ ++ +LSL
Sbjct: 266 VNGVFASFEELNNIEGFPTDKINRIQLYLSL 296
Score = 34.7 bits (76), Expect = 4.8
Identities = 18/63 (28%), Positives = 35/63 (55%)
Frame = +3
Query: 408 SEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
SE ++IN A+ +++ L + +LA +IV +RQ+ G F ++L + G DK+
Sbjct: 229 SEPSISKIDINTASAQEISKLIYLRYELASKIVEYRQVNGVFASFEELNNIEGFPTDKIN 288
Query: 588 LLR 596
++
Sbjct: 289 RIQ 291
>UniRef50_Q83MW2 Cluster: ComE operon protein 1-like protein; n=2;
Tropheryma whipplei|Rep: ComE operon protein 1-like
protein - Tropheryma whipplei (strain Twist) (Whipple's
bacillus)
Length = 193
Score = 52.8 bits (121), Expect = 2e-05
Identities = 24/66 (36%), Positives = 41/66 (62%)
Frame = +3
Query: 678 SESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTV 857
SES +IN++ +LQ + G+ + A I+D+RN+ GPFK L+DL K+ G+ + ++
Sbjct: 128 SESSPVNINTADAQRLQSIKGIGKATAKRIIDWRNKHGPFKRLEDLKKISGIGNKLIKSI 187
Query: 858 KQHLSL 875
K + L
Sbjct: 188 KDKVIL 193
Score = 46.8 bits (106), Expect = 0.001
Identities = 20/67 (29%), Positives = 39/67 (58%)
Frame = +3
Query: 405 PSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKL 584
P + +NIN A ++L ++ G+ + A+ I+ R G FKR++DL +SGIG +
Sbjct: 125 PKDSESSPVNINTADAQRLQSIKGIGKATAKRIIDWRNKHGPFKRLEDLKKISGIGNKLI 184
Query: 585 ELLRPEI 605
+ ++ ++
Sbjct: 185 KSIKDKV 191
>UniRef50_Q483A1 Cluster: ComE domain protein; n=1; Colwellia
psychrerythraea 34H|Rep: ComE domain protein - Colwellia
psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 112
Score = 52.8 bits (121), Expect = 2e-05
Identities = 24/50 (48%), Positives = 36/50 (72%)
Frame = +3
Query: 423 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 572
+++N+N +T EQL+TL GV A+ I+ +RQ +G FK V++L VSGIG
Sbjct: 50 QVVNLNKSTFEQLVTLKGVGNTKAQAIIVYRQQVGAFKSVNELTKVSGIG 99
Score = 39.9 bits (89), Expect = 0.13
Identities = 22/65 (33%), Positives = 38/65 (58%)
Frame = +3
Query: 681 ESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVK 860
+S++ ++N S+ QL + G+ A I+ YR + G FKS+++L KV G+ +S K
Sbjct: 48 KSQVVNLNKSTFEQLVTLKGVGNTKAQAIIVYRQQVGAFKSVNELTKVSGIGEKIVSDNK 107
Query: 861 QHLSL 875
LS+
Sbjct: 108 ARLSI 112
>UniRef50_Q03F17 Cluster: DNA uptake protein related DNA-binding
protein; n=1; Pediococcus pentosaceus ATCC 25745|Rep:
DNA uptake protein related DNA-binding protein -
Pediococcus pentosaceus (strain ATCC 25745 / 183-1w)
Length = 235
Score = 52.8 bits (121), Expect = 2e-05
Identities = 26/73 (35%), Positives = 44/73 (60%)
Frame = +3
Query: 366 LNKSSLSHTFSLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVD 545
+ SS+S + +++NIN A++ +L+TL GV + A +I+ +R+ G FK ++
Sbjct: 154 VGSSSISSSSPSTTDSSTEKIVNINTASKAELLTLNGVGDKKAEQIINYREQQGEFKSIE 213
Query: 546 DLALVSGIGADKL 584
DL V GIG DK+
Sbjct: 214 DLKQVQGIG-DKI 225
Score = 46.0 bits (104), Expect = 0.002
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Frame = +3
Query: 591 LRPEICTHTRKQLSR--ASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAAN 764
++ EI QLS +SS + S S S ++ +IN++S +L + G+ + A
Sbjct: 139 IKGEIKNSDPSQLSAVGSSSISSSSPSTTDSSTEKIVNINTASKAELLTLNGVGDKKAEQ 198
Query: 765 IVDYRNRKGPFKSLDDLIKVRGM 833
I++YR ++G FKS++DL +V+G+
Sbjct: 199 IINYREQQGEFKSIEDLKQVQGI 221
>UniRef50_A0KYK0 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein; n=4; Shewanella|Rep:
Competence protein ComEA helix-hairpin-helix repeat
protein - Shewanella sp. (strain ANA-3)
Length = 121
Score = 52.8 bits (121), Expect = 2e-05
Identities = 25/53 (47%), Positives = 35/53 (66%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
+NIN A+ EQL L G+ A+ I+ +R G+FK +D+LA VSGIGA +E
Sbjct: 61 VNINTASSEQLQLLKGIGAAKAQAIIDYRTQNGKFKAIDELANVSGIGAKLIE 113
Score = 44.8 bits (101), Expect = 0.004
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Frame = +3
Query: 552 ALVSGIGADKLELLRPEICTHTRKQLSRASSCAHS------LDSIRLPSESRLCSINSSS 713
A+VS I L L P + K +S+ + A + D+ + +S +IN++S
Sbjct: 9 AMVSAIAFSCLFAL-PAMAADPAKDVSKVQAQAQTEVKKATTDAKQAMPDSAQVNINTAS 67
Query: 714 VFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
QLQ + G+ A I+DYR + G FK++D+L V G+
Sbjct: 68 SEQLQLLKGIGAAKAQAIIDYRTQNGKFKAIDELANVSGI 107
>UniRef50_Q8G4D7 Cluster: Putative uncharacterized protein; n=2;
Bifidobacterium longum|Rep: Putative uncharacterized
protein - Bifidobacterium longum
Length = 259
Score = 52.4 bits (120), Expect = 2e-05
Identities = 24/60 (40%), Positives = 37/60 (61%)
Frame = +3
Query: 426 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
L+N+N AT E+L ++ G+ A+ I+ HR IG + VD L V GIG+ LE +R ++
Sbjct: 197 LINLNTATAEELQSIKGIGPVTAQRIIDHRTAIGGYTSVDQLLDVKGIGSKTLETMRGQV 256
Score = 39.9 bits (89), Expect = 0.13
Identities = 17/62 (27%), Positives = 37/62 (59%)
Frame = +3
Query: 690 LCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHL 869
L ++N+++ +LQ + G+ A I+D+R G + S+D L+ V+G+ L T++ +
Sbjct: 197 LINLNTATAEELQSIKGIGPVTAQRIIDHRTAIGGYTSVDQLLDVKGIGSKTLETMRGQV 256
Query: 870 SL 875
++
Sbjct: 257 TV 258
>UniRef50_Q49Y31 Cluster: Putative DNA uptake protein and related
DNA-binding protein; n=1; Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305|Rep: Putative DNA uptake
protein and related DNA-binding protein - Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305
/DSM 20229)
Length = 240
Score = 52.4 bits (120), Expect = 2e-05
Identities = 26/55 (47%), Positives = 36/55 (65%)
Frame = +3
Query: 423 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
E +NIN ATE QL+T+ G+ A+ I+ +RQ G F+ V+ L V+GIGA LE
Sbjct: 178 EQININDATESQLLTINGIGPTKAKAIIEYRQQHGPFESVEQLKDVNGIGAKTLE 232
Score = 38.7 bits (86), Expect = 0.29
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
Frame = +3
Query: 507 RHRQMIGRFKRVDDLALVSGIGADKLE----LLRPEICTHTRKQLSR---ASSCAHSLDS 665
R +Q++ + + D L S A+KL+ + P+I +K ++ A H+ DS
Sbjct: 109 RVKQLVDKAILLKDADLSSVNLAEKLQDQKVIYIPKIGDKDQKDINMNHFALKNNHTEDS 168
Query: 666 IRLPS--ESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDI 839
+ S S +IN ++ QL + G+ A I++YR + GPF+S++ L V G+
Sbjct: 169 KKGNSTINSEQININDATESQLLTINGIGPTKAKAIIEYRQQHGPFESVEQLKDVNGIGA 228
Query: 840 VRLSTVKQHLSL 875
L + L++
Sbjct: 229 KTLEKIGSKLTI 240
>UniRef50_Q2BK91 Cluster: Putative uncharacterized protein; n=1;
Neptuniibacter caesariensis|Rep: Putative
uncharacterized protein - Neptuniibacter caesariensis
Length = 100
Score = 52.4 bits (120), Expect = 2e-05
Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +3
Query: 399 LPPSEEYPELMNINAATEEQLMT-LPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 572
L P + EL++IN A+ EQL T L G+ A IV HR+ G FK VD+L V GIG
Sbjct: 16 LVPVSAFAELLDINTASVEQLSTNLKGIGHSKAEAIVAHREQHGPFKTVDELTQVKGIG 74
Score = 39.5 bits (88), Expect = 0.17
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = +3
Query: 684 SRLCSINSSSVFQLQC-VPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
+ L IN++SV QL + G+ A IV +R + GPFK++D+L +V+G+
Sbjct: 23 AELLDINTASVEQLSTNLKGIGHSKAEAIVAHREQHGPFKTVDELTQVKGI 73
>UniRef50_Q1ETT2 Cluster: Competence protein ComEA
helix-hairpin-helix region; n=1; Clostridium oremlandii
OhILAs|Rep: Competence protein ComEA helix-hairpin-helix
region - Clostridium oremlandii OhILAs
Length = 207
Score = 52.4 bits (120), Expect = 2e-05
Identities = 27/72 (37%), Positives = 39/72 (54%)
Frame = +3
Query: 390 TFSLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGI 569
T +L + L+NIN A+ +L LPG+ LA I+ HR G F ++DL VSGI
Sbjct: 133 TTNLVGGDTKSNLININTASAAELTALPGIGEVLANRIIEHRTSKGSFGSIEDLKNVSGI 192
Query: 570 GADKLELLRPEI 605
G K ++ +I
Sbjct: 193 GDRKFSDIKDKI 204
Score = 49.6 bits (113), Expect = 2e-04
Identities = 21/67 (31%), Positives = 43/67 (64%)
Frame = +3
Query: 678 SESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTV 857
++S L +IN++S +L +PG+ + +A I+++R KG F S++DL V G+ + S +
Sbjct: 141 TKSNLININTASAAELTALPGIGEVLANRIIEHRTSKGSFGSIEDLKNVSGIGDRKFSDI 200
Query: 858 KQHLSLE 878
K ++++
Sbjct: 201 KDKITVK 207
>UniRef50_A4XAF1 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein; n=2;
Salinispora|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein - Salinispora tropica
CNB-440
Length = 280
Score = 52.4 bits (120), Expect = 2e-05
Identities = 27/56 (48%), Positives = 35/56 (62%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 596
+N+N A+ QL TLPGV LA+ I+ HRQ G F+ V DL V GIG + E L+
Sbjct: 220 VNLNTASLAQLDTLPGVGPVLAQRILDHRQQHGGFRSVSDLRQVGGIGDTRYEQLK 275
Score = 42.7 bits (96), Expect = 0.018
Identities = 19/55 (34%), Positives = 35/55 (63%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVK 860
++N++S+ QL +PG+ +A I+D+R + G F+S+ DL +V G+ R +K
Sbjct: 221 NLNTASLAQLDTLPGVGPVLAQRILDHRQQHGGFRSVSDLRQVGGIGDTRYEQLK 275
>UniRef50_A2TTL6 Cluster: Putative uncharacterized protein; n=1;
Dokdonia donghaensis MED134|Rep: Putative
uncharacterized protein - Dokdonia donghaensis MED134
Length = 294
Score = 52.4 bits (120), Expect = 2e-05
Identities = 38/147 (25%), Positives = 69/147 (46%)
Frame = +3
Query: 435 INAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEICTH 614
+N+ T E L+ + GV+ A I+RHR +G ++ D + S G DK ++ + H
Sbjct: 166 LNSLTYEDLLAIEGVDENAATAIIRHRDKVGGYQV--DFQIYSVYGVDKS--VKRLVLNH 221
Query: 615 TRKQLSRASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGP 794
+++ E R ++N+++ L VP LN ++A IVDYR +
Sbjct: 222 Y---------------TVKNRPEIRFVNVNTATASDLSTVPLLNFDLAKEIVDYRTLREG 266
Query: 795 FKSLDDLIKVRGMDIVRLSTVKQHLSL 875
SL++L + GM + + +L +
Sbjct: 267 ISSLEELKDLEGMTDFKYDIIALYLQI 293
Score = 35.1 bits (77), Expect = 3.6
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +3
Query: 420 PEL--MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELL 593
PE+ +N+N AT L T+P +N LA+EIV +R + +++L + G+ K +++
Sbjct: 228 PEIRFVNVNTATASDLSTVPLLNFDLAKEIVDYRTLREGISSLEELKDLEGMTDFKYDII 287
>UniRef50_Q47IV8 Cluster: Competence protein ComEA
helix-hairpin-helix region; n=3; Betaproteobacteria|Rep:
Competence protein ComEA helix-hairpin-helix region -
Dechloromonas aromatica (strain RCB)
Length = 265
Score = 52.0 bits (119), Expect = 3e-05
Identities = 28/59 (47%), Positives = 37/59 (62%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
+NIN AT EQL L G+ A+ IV +R+ G FK VD+L V GIG L+ LRP++
Sbjct: 45 ININTATPEQLDGLKGIGPTKAKAIVDYRKKNGPFKSVDELQNVPGIGPATLKDLRPDV 103
Score = 42.3 bits (95), Expect = 0.024
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVK 860
+IN+++ QL + G+ A IVDYR + GPFKS+D+L V G+ L ++
Sbjct: 46 NINTATPEQLDGLKGIGPTKAKAIVDYRKKNGPFKSVDELQNVPGIGPATLKDLR 100
>UniRef50_Q3AF21 Cluster: Competence protein; n=1; Carboxydothermus
hydrogenoformans Z-2901|Rep: Competence protein -
Carboxydothermus hydrogenoformans (strain Z-2901 / DSM
6008)
Length = 204
Score = 52.0 bits (119), Expect = 3e-05
Identities = 26/59 (44%), Positives = 35/59 (59%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
+NIN AT E+L LPGV A +I+ +R+ G F ++DL V GIG K E L+ I
Sbjct: 143 VNINTATAEELDELPGVGPATAAKIIEYREQNGPFATIEDLKKVKGIGDKKFETLKDYI 201
Score = 50.8 bits (116), Expect = 7e-05
Identities = 20/60 (33%), Positives = 41/60 (68%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
+IN+++ +L +PG+ AA I++YR + GPF +++DL KV+G+ + T+K ++++
Sbjct: 144 NINTATAEELDELPGVGPATAAKIIEYREQNGPFATIEDLKKVKGIGDKKFETLKDYITV 203
>UniRef50_Q38WQ9 Cluster: Putative bacterial type II
secretion/competence system, protein ComEA- like; n=1;
Lactobacillus sakei subsp. sakei 23K|Rep: Putative
bacterial type II secretion/competence system, protein
ComEA- like - Lactobacillus sakei subsp. sakei (strain
23K)
Length = 234
Score = 52.0 bits (119), Expect = 3e-05
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEIC 608
+++N A QL TL G+ + A +I+ +R G+FK+++DL V GIG E L+ +IC
Sbjct: 173 IDLNQADSTQLQTLNGIGPKKAEQIIAYRDEQGKFKQIEDLQKVGGIGPKTFEQLQSQIC 232
Query: 609 TH 614
+
Sbjct: 233 VN 234
Score = 39.5 bits (88), Expect = 0.17
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +3
Query: 678 SESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
S++ +N + QLQ + G+ + A I+ YR+ +G FK ++DL KV G+
Sbjct: 168 SDTAKIDLNQADSTQLQTLNGIGPKKAEQIIAYRDEQGKFKQIEDLQKVGGI 219
>UniRef50_Q1ZI08 Cluster: Putative uncharacterized protein; n=1;
Psychromonas sp. CNPT3|Rep: Putative uncharacterized
protein - Psychromonas sp. CNPT3
Length = 104
Score = 52.0 bits (119), Expect = 3e-05
Identities = 24/59 (40%), Positives = 38/59 (64%)
Frame = +3
Query: 423 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 599
E +NIN A+ + G+ + A EIV++R+ G+FK+++DL V+GIG LE +RP
Sbjct: 42 EKLNINTASIADFAMIKGLGEKKAGEIVKYRETYGKFKKIEDLLNVTGIGKMLLEKIRP 100
Score = 46.0 bits (104), Expect = 0.002
Identities = 26/80 (32%), Positives = 44/80 (55%)
Frame = +3
Query: 636 ASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDL 815
AS+ + S L + +L +IN++S+ + GL ++ A IV YR G FK ++DL
Sbjct: 26 ASNSFSDMASSALGNIEKL-NINTASIADFAMIKGLGEKKAGEIVKYRETYGKFKKIEDL 84
Query: 816 IKVRGMDIVRLSTVKQHLSL 875
+ V G+ + L ++ LSL
Sbjct: 85 LNVTGIGKMLLEKIRPFLSL 104
>UniRef50_A0Q1S7 Cluster: Competence protein; n=1; Clostridium novyi
NT|Rep: Competence protein - Clostridium novyi (strain
NT)
Length = 224
Score = 52.0 bits (119), Expect = 3e-05
Identities = 25/59 (42%), Positives = 36/59 (61%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
+NIN AT+E+LM LPGV A+ I+ +R+ G F VDD+ V+ IG L + +I
Sbjct: 163 ININTATKEELMKLPGVGEVTAQNIIDYREKSGGFNSVDDITKVNRIGTKTLAKFKDKI 221
Score = 46.8 bits (106), Expect = 0.001
Identities = 22/66 (33%), Positives = 41/66 (62%)
Frame = +3
Query: 678 SESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTV 857
+ES++ +IN+++ +L +PG+ + A NI+DYR + G F S+DD+ KV + L+
Sbjct: 159 NESKI-NINTATKEELMKLPGVGEVTAQNIIDYREKSGGFNSVDDITKVNRIGTKTLAKF 217
Query: 858 KQHLSL 875
K + +
Sbjct: 218 KDKIEV 223
>UniRef50_Q5HNV7 Cluster: ComE operon protein 1, putative; n=2;
Staphylococcus epidermidis|Rep: ComE operon protein 1,
putative - Staphylococcus epidermidis (strain ATCC 35984
/ RP62A)
Length = 224
Score = 51.6 bits (118), Expect = 4e-05
Identities = 22/56 (39%), Positives = 34/56 (60%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 596
+N+N+ATEEQL +PG+ A+EI+ +R+ F +DDL + G G E L+
Sbjct: 164 LNLNSATEEQLKNIPGIGPSKAKEILNYREQNHGFNSIDDLMKIKGFGKKTFEKLK 219
Score = 46.4 bits (105), Expect = 0.001
Identities = 19/60 (31%), Positives = 37/60 (61%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
++NS++ QL+ +PG+ A I++YR + F S+DDL+K++G +K+H ++
Sbjct: 165 NLNSATEEQLKNIPGIGPSKAKEILNYREQNHGFNSIDDLMKIKGFGKKTFEKLKEHFTI 224
>UniRef50_Q3E1Z2 Cluster: Helix-hairpin-helix motif; n=1;
Chloroflexus aurantiacus J-10-fl|Rep:
Helix-hairpin-helix motif - Chloroflexus aurantiacus
J-10-fl
Length = 245
Score = 51.6 bits (118), Expect = 4e-05
Identities = 24/56 (42%), Positives = 34/56 (60%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 596
++IN A E L+ LPG+ LA I+ +R+ G FK VDDL +SGIG + + R
Sbjct: 181 VDINRADRETLIALPGIGPVLADRIIAYREAHGPFKSVDDLTAISGIGERNINIFR 236
Score = 39.5 bits (88), Expect = 0.17
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
IN + L +PG+ +A I+ YR GPFKS+DDL + G+
Sbjct: 183 INRADRETLIALPGIGPVLADRIIAYREAHGPFKSVDDLTAISGI 227
>UniRef50_Q5WHH4 Cluster: Late competence protein ComEA; n=1;
Bacillus clausii KSM-K16|Rep: Late competence protein
ComEA - Bacillus clausii (strain KSM-K16)
Length = 204
Score = 51.2 bits (117), Expect = 5e-05
Identities = 26/64 (40%), Positives = 37/64 (57%)
Frame = +3
Query: 414 EYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELL 593
++ + +NIN ATE L+TL G+ A I+ +R+ G F V++L VSGIG E L
Sbjct: 138 DHEDTININEATEADLLTLQGIGPSKAAAIIGYREENGSFATVEELMNVSGIGEKTFEAL 197
Query: 594 RPEI 605
P I
Sbjct: 198 EPLI 201
>UniRef50_Q2LTK2 Cluster: DNA-binding protein, ComEA family; n=1;
Syntrophus aciditrophicus SB|Rep: DNA-binding protein,
ComEA family - Syntrophus aciditrophicus (strain SB)
Length = 204
Score = 51.2 bits (117), Expect = 5e-05
Identities = 20/60 (33%), Positives = 41/60 (68%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSLE 878
+NS+S+ +L+ VPG+ ++ A I++ RN+KG F L++++K+ G+ +L ++ L +E
Sbjct: 143 VNSASMAELELVPGIGEKTAQKIIEARNQKGKFHKLEEMMKINGIKQKKLDKLRPFLCVE 202
Score = 48.0 bits (109), Expect = 5e-04
Identities = 18/60 (30%), Positives = 40/60 (66%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEIC 608
+++N+A+ +L +PG+ + A++I+ R G+F +++++ ++GI KL+ LRP +C
Sbjct: 141 IDVNSASMAELELVPGIGEKTAQKIIEARNQKGKFHKLEEMMKINGIKQKKLDKLRPFLC 200
>UniRef50_Q2FGD4 Cluster: ComE operon protein 1; n=12;
Staphylococcus aureus|Rep: ComE operon protein 1 -
Staphylococcus aureus (strain USA300)
Length = 228
Score = 51.2 bits (117), Expect = 5e-05
Identities = 23/59 (38%), Positives = 38/59 (64%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLS 872
++N++SV +L VPG+ Q A IV+YRN++G F+ +DDL KV+G +K + +
Sbjct: 169 NLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFT 227
Score = 48.8 bits (111), Expect = 3e-04
Identities = 22/61 (36%), Positives = 35/61 (57%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEIC 608
+N+N A+ +LM++PGV + A IV +R G F+ +DDL V G G+ + L+
Sbjct: 168 VNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFT 227
Query: 609 T 611
T
Sbjct: 228 T 228
>UniRef50_Q9RIA7 Cluster: ComEA protein; n=24; Proteobacteria|Rep:
ComEA protein - Neisseria meningitidis
Length = 170
Score = 51.2 bits (117), Expect = 5e-05
Identities = 25/58 (43%), Positives = 35/58 (60%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 602
+NINAA++++L LPG+ A+ I +R G FK VDDL V GIG L L+ +
Sbjct: 92 VNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQ 149
Score = 48.4 bits (110), Expect = 4e-04
Identities = 23/60 (38%), Positives = 38/60 (63%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
+IN++S +L+ +PG+ A I +YR + G FKS+DDL KV+G+ L+ +K S+
Sbjct: 93 NINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASV 152
>UniRef50_A0H2U6 Cluster: Competence protein ComEA
helix-hairpin-helix region; n=2; Chloroflexus|Rep:
Competence protein ComEA helix-hairpin-helix region -
Chloroflexus aggregans DSM 9485
Length = 205
Score = 51.2 bits (117), Expect = 5e-05
Identities = 25/59 (42%), Positives = 34/59 (57%)
Frame = +3
Query: 423 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 599
EL+N+N AT L LPGV + LA I+ R+ G ++ VD+L VSGIG + P
Sbjct: 141 ELINLNRATASDLEELPGVGKTLAERIIARRETQGPYRSVDELREVSGIGEKLFNQIAP 199
Score = 39.9 bits (89), Expect = 0.13
Identities = 18/58 (31%), Positives = 38/58 (65%)
Frame = +3
Query: 660 DSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
+S R P ++ L ++N ++ L+ +PG+ + +A I+ R +GP++S+D+L +V G+
Sbjct: 133 ESDRSP-DNELINLNRATASDLEELPGVGKTLAERIIARRETQGPYRSVDELREVSGI 189
>UniRef50_Q9CER3 Cluster: Competence protein ComEA; n=3; Lactococcus
lactis|Rep: Competence protein ComEA - Lactococcus
lactis subsp. lactis (Streptococcus lactis)
Length = 215
Score = 50.8 bits (116), Expect = 7e-05
Identities = 28/79 (35%), Positives = 47/79 (59%)
Frame = +3
Query: 642 SCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIK 821
S A+S+ S ++ + + +IN + + +LQ + G+ Q+ A +I+D+R + G FKSL+DL K
Sbjct: 138 SSANSVTS-QVSTTTEKININQADLTELQKLTGVGQKKAQDIIDFRTKNGDFKSLEDLGK 196
Query: 822 VRGMDIVRLSTVKQHLSLE 878
V G L +K L E
Sbjct: 197 VSGFGDKTLEKLKDELCFE 215
Score = 50.8 bits (116), Expect = 7e-05
Identities = 26/62 (41%), Positives = 37/62 (59%)
Frame = +3
Query: 423 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 602
E +NIN A +L L GV ++ A++I+ R G FK ++DL VSG G LE L+ E
Sbjct: 152 EKININQADLTELQKLTGVGQKKAQDIIDFRTKNGDFKSLEDLGKVSGFGDKTLEKLKDE 211
Query: 603 IC 608
+C
Sbjct: 212 LC 213
>UniRef50_Q8RB96 Cluster: DNA uptake protein and related DNA-binding
proteins; n=3; Thermoanaerobacter|Rep: DNA uptake
protein and related DNA-binding proteins -
Thermoanaerobacter tengcongensis
Length = 196
Score = 50.8 bits (116), Expect = 7e-05
Identities = 23/59 (38%), Positives = 36/59 (61%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
+NIN AT+E+L TLPG+ A I+ R+ G FK+++D+ V IG E ++ +I
Sbjct: 135 VNINTATKEELQTLPGIGPVTAERIIEFRETKGPFKKIEDIMNVPRIGPKMFEQIKDKI 193
Score = 43.6 bits (98), Expect = 0.010
Identities = 17/61 (27%), Positives = 37/61 (60%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
+IN+++ +LQ +PG+ A I+++R KGPFK ++D++ V + +K +++
Sbjct: 136 NINTATKEELQTLPGIGPVTAERIIEFRETKGPFKKIEDIMNVPRIGPKMFEQIKDKITV 195
Query: 876 E 878
+
Sbjct: 196 D 196
>UniRef50_Q6HT65 Cluster: ComE operon protein 1; n=22; Bacillus|Rep:
ComE operon protein 1 - Bacillus anthracis
Length = 199
Score = 50.8 bits (116), Expect = 7e-05
Identities = 22/61 (36%), Positives = 40/61 (65%)
Frame = +3
Query: 423 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 602
E + INAA++EQL + G+ + A I+++R+ G F++++DL + GIG LE ++ +
Sbjct: 136 EKVRINAASKEQLEKITGIGSRKAESILKYREEHGPFQKIEDLLEIDGIGVKSLEKIKDQ 195
Query: 603 I 605
I
Sbjct: 196 I 196
Score = 45.2 bits (102), Expect = 0.003
Identities = 18/57 (31%), Positives = 35/57 (61%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHL 869
IN++S QL+ + G+ A +I+ YR GPF+ ++DL+++ G+ + L +K +
Sbjct: 140 INAASKEQLEKITGIGSRKAESILKYREEHGPFQKIEDLLEIDGIGVKSLEKIKDQI 196
>UniRef50_Q1QEJ7 Cluster: Competence protein ComEA
helix-hairpin-helix region precursor; n=2;
Psychrobacter|Rep: Competence protein ComEA
helix-hairpin-helix region precursor - Psychrobacter
cryohalolentis (strain K5)
Length = 143
Score = 50.8 bits (116), Expect = 7e-05
Identities = 23/54 (42%), Positives = 35/54 (64%)
Frame = +3
Query: 426 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
++NIN ATE +L L G+ A+ I+ +R+M G F+ VD+L V GIGA ++
Sbjct: 80 IININRATEGELTLLHGIGSNKAQAIILYREMFGSFRTVDELTKVKGIGAKTVD 133
>UniRef50_Q1NUX5 Cluster: Helix-hairpin-helix motif; n=1; delta
proteobacterium MLMS-1|Rep: Helix-hairpin-helix motif -
delta proteobacterium MLMS-1
Length = 115
Score = 50.8 bits (116), Expect = 7e-05
Identities = 26/55 (47%), Positives = 31/55 (56%)
Frame = +3
Query: 435 INAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 599
IN A ++ L LPG+ LA IV HRQ G F +D L V GIG L+ LRP
Sbjct: 57 INRADQQTLTVLPGIGPVLAARIVEHRQRHGPFASIDQLTAVPGIGPVTLKRLRP 111
Score = 43.6 bits (98), Expect = 0.010
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
IN + L +PG+ +AA IV++R R GPF S+D L V G+ V L ++ ++L
Sbjct: 57 INRADQQTLTVLPGIGPVLAARIVEHRQRHGPFASIDQLTAVPGIGPVTLKRLRPLVTL 115
>UniRef50_O85197 Cluster: Competence protein; n=17;
Streptococcus|Rep: Competence protein - Streptococcus
pneumoniae
Length = 216
Score = 50.8 bits (116), Expect = 7e-05
Identities = 23/56 (41%), Positives = 38/56 (67%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 596
+N+N A+ E+L + G+ + A++I+ HR+ G+FK VD+L VSGIG +E L+
Sbjct: 155 VNLNKASLEELKQVKGLGGKRAQDIIDHREANGKFKSVDELKKVSGIGGKTIEKLK 210
Score = 45.6 bits (103), Expect = 0.003
Identities = 21/67 (31%), Positives = 43/67 (64%)
Frame = +3
Query: 678 SESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTV 857
S+ + ++N +S+ +L+ V GL + A +I+D+R G FKS+D+L KV G+ + +
Sbjct: 150 SKEKKVNLNKASLEELKQVKGLGGKRAQDIIDHREANGKFKSVDELKKVSGIGGKTIEKL 209
Query: 858 KQHLSLE 878
K +++++
Sbjct: 210 KDYVTVD 216
>UniRef50_A1S4Z4 Cluster: DNA uptake protein-related DNA-binding
protein precursor; n=1; Shewanella amazonensis SB2B|Rep:
DNA uptake protein-related DNA-binding protein precursor
- Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
Length = 103
Score = 50.8 bits (116), Expect = 7e-05
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
+NIN ATE +L L G+ + A+ IV +R GRF V+DL V+G+G L+
Sbjct: 43 ININTATESELQLLKGIGQAKAKAIVEYRNQYGRFASVEDLTKVAGVGQKVLD 95
Score = 47.6 bits (108), Expect = 6e-04
Identities = 26/70 (37%), Positives = 44/70 (62%)
Frame = +3
Query: 666 IRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVR 845
+++P S++ +IN+++ +LQ + G+ Q A IV+YRN+ G F S++DL KV G+
Sbjct: 35 VQMPQTSKI-NINTATESELQLLKGIGQAKAKAIVEYRNQYGRFASVEDLTKVAGVGQKV 93
Query: 846 LSTVKQHLSL 875
L + LSL
Sbjct: 94 LDDNRDILSL 103
>UniRef50_A1RL71 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=7;
Shewanella|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein precursor -
Shewanella sp. (strain W3-18-1)
Length = 127
Score = 50.8 bits (116), Expect = 7e-05
Identities = 25/53 (47%), Positives = 34/53 (64%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
+NIN A+ E+L L G+ A+ IV +R G+F +DDLA VSGIGA +E
Sbjct: 67 VNINTASVEELQELKGIGAAKAQAIVDYRTQNGKFNAIDDLANVSGIGAKLIE 119
Score = 43.2 bits (97), Expect = 0.014
Identities = 23/58 (39%), Positives = 35/58 (60%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHL 869
+IN++SV +LQ + G+ A IVDYR + G F ++DDL V G+ +L +HL
Sbjct: 68 NINTASVEELQELKGIGAAKAQAIVDYRTQNGKFNAIDDLANVSGIG-AKLIEQNRHL 124
>UniRef50_A0LSY6 Cluster: Helix-hairpin-helix motif; n=1;
Acidothermus cellulolyticus 11B|Rep: Helix-hairpin-helix
motif - Acidothermus cellulolyticus (strain ATCC 43068 /
11B)
Length = 250
Score = 50.8 bits (116), Expect = 7e-05
Identities = 28/60 (46%), Positives = 34/60 (56%)
Frame = +3
Query: 426 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
L+N+N AT+++L TLPGV LA IV R GRF V L V GIG K LR +
Sbjct: 189 LINLNTATQQELETLPGVGPVLAGNIVAWRNRHGRFSSVAQLQEVPGIGPAKYAQLRTRV 248
Score = 40.7 bits (91), Expect = 0.073
Identities = 19/52 (36%), Positives = 34/52 (65%)
Frame = +3
Query: 678 SESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
+E L ++N+++ +L+ +PG+ +A NIV +RNR G F S+ L +V G+
Sbjct: 185 AEHGLINLNTATQQELETLPGVGPVLAGNIVAWRNRHGRFSSVAQLQEVPGI 236
>UniRef50_P39694 Cluster: ComE operon protein 1; n=2; Bacillus|Rep:
ComE operon protein 1 - Bacillus subtilis
Length = 205
Score = 50.8 bits (116), Expect = 7e-05
Identities = 24/60 (40%), Positives = 36/60 (60%)
Frame = +3
Query: 426 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
L+NIN AT E+L + GV A I+ +R+ GRF+ ++D+ VSGIG E ++ I
Sbjct: 143 LVNINTATLEELQGISGVGPSKAEAIIAYREENGRFQTIEDITKVSGIGEKSFEKIKSSI 202
>UniRef50_Q82C63 Cluster: Putative exogenous DNA-binding protein;
n=2; Streptomyces|Rep: Putative exogenous DNA-binding
protein - Streptomyces avermitilis
Length = 387
Score = 50.4 bits (115), Expect = 9e-05
Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG----ADKLELLR 596
+++N AT +QL TLPGV LA+ I+ +R G F+ VD+L V+GIG AD L+R
Sbjct: 327 VSLNTATADQLDTLPGVGPVLAQHIIDYRTQHGGFRSVDELREVNGIGDRRFADLQNLVR 386
Query: 597 P 599
P
Sbjct: 387 P 387
Score = 44.8 bits (101), Expect = 0.004
Identities = 18/46 (39%), Positives = 33/46 (71%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
S+N+++ QL +PG+ +A +I+DYR + G F+S+D+L +V G+
Sbjct: 328 SLNTATADQLDTLPGVGPVLAQHIIDYRTQHGGFRSVDELREVNGI 373
>UniRef50_Q47RQ3 Cluster: Helix-hairpin-helix DNA-binding, class 1;
n=1; Thermobifida fusca YX|Rep: Helix-hairpin-helix
DNA-binding, class 1 - Thermobifida fusca (strain YX)
Length = 355
Score = 50.4 bits (115), Expect = 9e-05
Identities = 25/56 (44%), Positives = 35/56 (62%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 596
+++N AT +QL TLPG+ LA+ I+ HR IG F V+ L V+GIG + LR
Sbjct: 291 IDLNTATADQLQTLPGIGPVLAQRIIDHRASIGGFTSVEQLHDVTGIGDRRFAELR 346
Score = 38.3 bits (85), Expect = 0.39
Identities = 19/63 (30%), Positives = 35/63 (55%)
Frame = +3
Query: 672 LPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLS 851
LP+ +N+++ QLQ +PG+ +A I+D+R G F S++ L V G+ R +
Sbjct: 284 LPAGDGRIDLNTATADQLQTLPGIGPVLAQRIIDHRASIGGFTSVEQLHDVTGIGDRRFA 343
Query: 852 TVK 860
++
Sbjct: 344 ELR 346
>UniRef50_Q3A6K8 Cluster: DNA uptake/competence protein; n=1;
Pelobacter carbinolicus DSM 2380|Rep: DNA
uptake/competence protein - Pelobacter carbinolicus
(strain DSM 2380 / Gra Bd 1)
Length = 128
Score = 50.4 bits (115), Expect = 9e-05
Identities = 23/60 (38%), Positives = 37/60 (61%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
S+NS++ QLQ +PG+ A IV YR GPF +++DL+ V+G+ LS ++ + L
Sbjct: 68 SLNSATAKQLQILPGIGAVTADRIVAYRKAHGPFANVEDLLHVKGIGTQTLSKIRDRIVL 127
Score = 48.4 bits (110), Expect = 4e-04
Identities = 26/66 (39%), Positives = 36/66 (54%)
Frame = +3
Query: 408 SEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
SE +++N+AT +QL LPG+ A IV +R+ G F V+DL V GIG L
Sbjct: 60 SEIATTAVSLNSATAKQLQILPGIGAVTADRIVAYRKAHGPFANVEDLLHVKGIGTQTLS 119
Query: 588 LLRPEI 605
+R I
Sbjct: 120 KIRDRI 125
>UniRef50_UPI00015C4860 Cluster: hypothetical protein CCC13826_1428;
n=1; Campylobacter concisus 13826|Rep: hypothetical
protein CCC13826_1428 - Campylobacter concisus 13826
Length = 173
Score = 50.0 bits (114), Expect = 1e-04
Identities = 25/68 (36%), Positives = 42/68 (61%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEIC 608
+N+N AT+E+LM+L G+ A I+ +R+ +F +DDL V+GIG + L+ EI
Sbjct: 19 INLNTATKEELMSLDGIGSAKADAIIEYRKA-NKFNSIDDLKNVNGIGDKTFDNLKGEIS 77
Query: 609 THTRKQLS 632
T + ++S
Sbjct: 78 TTGKSEVS 85
>UniRef50_Q7UJD5 Cluster: Probable comEA-related protein; n=1;
Pirellula sp.|Rep: Probable comEA-related protein -
Rhodopirellula baltica
Length = 234
Score = 50.0 bits (114), Expect = 1e-04
Identities = 23/57 (40%), Positives = 33/57 (57%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 599
+ +N++ +L LPG+ LA +VRHR+ G F V+DL V G+G L LRP
Sbjct: 109 IGLNSSDARELSLLPGIGPNLADRVVRHRESHGPFASVEDLLAVHGVGPKLLHSLRP 165
Score = 42.7 bits (96), Expect = 0.018
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +3
Query: 669 RLPSESRLCSI--NSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
R P S SI NSS +L +PG+ +A +V +R GPF S++DL+ V G+
Sbjct: 99 RSPEASAKLSIGLNSSDARELSLLPGIGPNLADRVVRHRESHGPFASVEDLLAVHGV 155
>UniRef50_Q8VQ77 Cluster: Late competence protein ComEA; n=6;
Bacillus|Rep: Late competence protein ComEA - Bacillus
licheniformis
Length = 209
Score = 50.0 bits (114), Expect = 1e-04
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +3
Query: 423 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 602
+++NIN A+ E+L +PG+ A ++ +R+ G F V+D+ VSGIG E ++
Sbjct: 146 DIVNINTASSEELQAIPGIGPSKAEAVIEYREENGPFHTVEDITNVSGIGEKSFERIKSA 205
Query: 603 I 605
I
Sbjct: 206 I 206
Score = 44.8 bits (101), Expect = 0.004
Identities = 17/63 (26%), Positives = 37/63 (58%)
Frame = +3
Query: 690 LCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHL 869
+ +IN++S +LQ +PG+ A +++YR GPF +++D+ V G+ +K +
Sbjct: 147 IVNINTASSEELQAIPGIGPSKAEAVIEYREENGPFHTVEDITNVSGIGEKSFERIKSAI 206
Query: 870 SLE 878
+++
Sbjct: 207 TVK 209
>UniRef50_A6CQY2 Cluster: Late competence protein; n=1; Bacillus sp.
SG-1|Rep: Late competence protein - Bacillus sp. SG-1
Length = 202
Score = 50.0 bits (114), Expect = 1e-04
Identities = 25/63 (39%), Positives = 38/63 (60%)
Frame = +3
Query: 417 YPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 596
+ EL+NIN A+E+ LPG+ A+ I+ +R+ G FK V++L V+GIG E L+
Sbjct: 137 HSELLNINQASEQDFDGLPGIGPAKAKAIIEYRKENGPFKAVEELKDVTGIGEATFERLK 196
Query: 597 PEI 605
I
Sbjct: 197 ENI 199
Score = 42.3 bits (95), Expect = 0.024
Identities = 19/64 (29%), Positives = 36/64 (56%)
Frame = +3
Query: 684 SRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQ 863
S L +IN +S +PG+ A I++YR GPFK++++L V G+ +K+
Sbjct: 138 SELLNINQASEQDFDGLPGIGPAKAKAIIEYRKENGPFKAVEELKDVTGIGEATFERLKE 197
Query: 864 HLSL 875
++++
Sbjct: 198 NITV 201
>UniRef50_A4M6C4 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein; n=1; Petrotoga
mobilis SJ95|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein - Petrotoga mobilis
SJ95
Length = 171
Score = 50.0 bits (114), Expect = 1e-04
Identities = 39/132 (29%), Positives = 68/132 (51%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEIC 608
+++ A+ E+L+ LPG+ A+ I+ +RQ G F+ ++D+ VSGIG
Sbjct: 42 IDLLTASVEELIRLPGIGPAKAQAIINYRQEKG-FREIEDIMNVSGIG------------ 88
Query: 609 THTRKQLSRASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRK 788
K S + + I + ++ +IN +S +L+ +PG+ + A I++YR K
Sbjct: 89 ---EKTFSNIKDYIYLSEVIYEIVDEKI-NINEASSEELESLPGIGKVSAQKIIEYRAIK 144
Query: 789 GPFKSLDDLIKV 824
P SLDDL K+
Sbjct: 145 -PISSLDDLKKL 155
Score = 37.1 bits (82), Expect = 0.89
Identities = 21/74 (28%), Positives = 41/74 (55%)
Frame = +3
Query: 705 SSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSLELR 884
++SV +L +PG+ A I++YR KG F+ ++D++ V G+ S +K ++ L
Sbjct: 46 TASVEELIRLPGIGPAKAQAIINYRQEKG-FREIEDIMNVSGIGEKTFSNIKDYIYL--- 101
Query: 885 KSESVQHLTNGHVN 926
SE + + + +N
Sbjct: 102 -SEVIYEIVDEKIN 114
Score = 36.7 bits (81), Expect = 1.2
Identities = 21/61 (34%), Positives = 37/61 (60%)
Frame = +3
Query: 423 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 602
E +NIN A+ E+L +LPG+ + A++I+ +R I +DDL + GI + +E + +
Sbjct: 111 EKININEASSEELESLPGIGKVSAQKIIEYR-AIKPISSLDDLKKL-GIPSSTIEKIEGK 168
Query: 603 I 605
I
Sbjct: 169 I 169
>UniRef50_A0GZS8 Cluster: Helix-hairpin-helix motif; n=1;
Chloroflexus aggregans DSM 9485|Rep: Helix-hairpin-helix
motif - Chloroflexus aggregans DSM 9485
Length = 298
Score = 50.0 bits (114), Expect = 1e-04
Identities = 25/56 (44%), Positives = 33/56 (58%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 596
++IN A L+TLPG+ LA I+ +R+ G FK VDDL VSGIG + R
Sbjct: 235 VDINRADRATLITLPGIGPVLADRIIAYREAHGPFKSVDDLIAVSGIGERNINAFR 290
Score = 41.9 bits (94), Expect = 0.031
Identities = 20/45 (44%), Positives = 27/45 (60%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
IN + L +PG+ +A I+ YR GPFKS+DDLI V G+
Sbjct: 237 INRADRATLITLPGIGPVLADRIIAYREAHGPFKSVDDLIAVSGI 281
>UniRef50_Q5XBA3 Cluster: COME operon protein 1; n=11; Streptococcus
pyogenes|Rep: COME operon protein 1 - Streptococcus
pyogenes serotype M6
Length = 220
Score = 49.6 bits (113), Expect = 2e-04
Identities = 23/59 (38%), Positives = 38/59 (64%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
++IN A+ E+L +PG+ + A++I+ R +G FK ++DL SGIG LE L+ +I
Sbjct: 159 VHINKASLEELQHIPGIGAKRAQDIIDMRDKLGGFKALEDLRQASGIGEKTLEKLKDDI 217
Score = 46.0 bits (104), Expect = 0.002
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Frame = +3
Query: 585 ELLRPEICTHTRKQLSRASSCAHSLDSIRLPSESRLCS---INSSSVFQLQCVPGLNQEI 755
E L E + KQ S SL S + + S+ S IN +S+ +LQ +PG+ +
Sbjct: 120 EKLTDEQVVYVPKQGEEISVLPRSLVSGKKETASKDQSKVHINKASLEELQHIPGIGAKR 179
Query: 756 AANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSLE 878
A +I+D R++ G FK+L+DL + G+ L +K + L+
Sbjct: 180 AQDIIDMRDKLGGFKALEDLRQASGIGEKTLEKLKDDIFLD 220
>UniRef50_Q2RKY9 Cluster: Competence protein ComEA
helix-hairpin-helix region; n=1; Moorella thermoacetica
ATCC 39073|Rep: Competence protein ComEA
helix-hairpin-helix region - Moorella thermoacetica
(strain ATCC 39073)
Length = 224
Score = 49.6 bits (113), Expect = 2e-04
Identities = 19/60 (31%), Positives = 40/60 (66%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
+IN++ + +L +PG+ +A I+DYR +KGPF++++DL V G+ + + +K +++
Sbjct: 164 NINTAGLAELDSLPGIGPTLAQRILDYRTQKGPFRTIEDLQNVSGIGAKKFADLKDLITV 223
Score = 46.8 bits (106), Expect = 0.001
Identities = 24/56 (42%), Positives = 35/56 (62%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 596
+NIN A +L +LPG+ LA+ I+ +R G F+ ++DL VSGIGA K L+
Sbjct: 163 VNINTAGLAELDSLPGIGPTLAQRILDYRTQKGPFRTIEDLQNVSGIGAKKFADLK 218
>UniRef50_Q6M3A1 Cluster: Secreted DNA uptake protein or related
DNA-binding protein; n=3; Corynebacterium
glutamicum|Rep: Secreted DNA uptake protein or related
DNA-binding protein - Corynebacterium glutamicum
(Brevibacterium flavum)
Length = 217
Score = 49.6 bits (113), Expect = 2e-04
Identities = 24/54 (44%), Positives = 33/54 (61%)
Frame = +3
Query: 426 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
L+++N AT L+TLPGV + A+ I+ R+ G F V+DL V GIG K E
Sbjct: 156 LISLNTATVADLVTLPGVGEKTAQAIIDFRESNGGFSTVEDLLQVKGIGPSKFE 209
Score = 46.0 bits (104), Expect = 0.002
Identities = 19/52 (36%), Positives = 36/52 (69%)
Frame = +3
Query: 678 SESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
S S L S+N+++V L +PG+ ++ A I+D+R G F +++DL++V+G+
Sbjct: 152 SASGLISLNTATVADLVTLPGVGEKTAQAIIDFRESNGGFSTVEDLLQVKGI 203
>UniRef50_Q026M9 Cluster: DNA uptake protein and related DNA-binding
protein-like protein precursor; n=1; Solibacter usitatus
Ellin6076|Rep: DNA uptake protein and related
DNA-binding protein-like protein precursor - Solibacter
usitatus (strain Ellin6076)
Length = 148
Score = 49.6 bits (113), Expect = 2e-04
Identities = 25/64 (39%), Positives = 35/64 (54%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
++NS+ L G +++ AA IV YR + GPFKSLDDL KV +D + + K L
Sbjct: 85 NVNSAVAEDLAAGTGFSKDAAAAIVAYRQKNGPFKSLDDLKKVPSLDAAEVDSKKDRLEF 144
Query: 876 ELRK 887
K
Sbjct: 145 GAAK 148
Score = 37.9 bits (84), Expect = 0.51
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +3
Query: 432 NINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
N+N+A E L G ++ A IV +RQ G FK +DDL V + A +++
Sbjct: 85 NVNSAVAEDLAAGTGFSKDAAAAIVAYRQKNGPFKSLDDLKKVPSLDAAEVD 136
>UniRef50_A7HBX1 Cluster: DNA uptake protein; n=2;
Anaeromyxobacter|Rep: DNA uptake protein -
Anaeromyxobacter sp. Fw109-5
Length = 148
Score = 49.6 bits (113), Expect = 2e-04
Identities = 23/59 (38%), Positives = 38/59 (64%)
Frame = +3
Query: 702 NSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSLE 878
N ++ +L VPGL++ +AA +V R R GPF ++ L++VRG+ RL+ + L+LE
Sbjct: 89 NRATARELAFVPGLSRRLAAEVVADRTRNGPFPDVESLLRVRGIGPKRLARARPALALE 147
Score = 44.8 bits (101), Expect = 0.004
Identities = 23/56 (41%), Positives = 32/56 (57%)
Frame = +3
Query: 438 NAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
N AT +L +PG++R+LA E+V R G F V+ L V GIG +L RP +
Sbjct: 89 NRATARELAFVPGLSRRLAAEVVADRTRNGPFPDVESLLRVRGIGPKRLARARPAL 144
>UniRef50_A5CR90 Cluster: Putative uncharacterized protein; n=1;
Clavibacter michiganensis subsp. michiganensis NCPPB
382|Rep: Putative uncharacterized protein - Clavibacter
michiganensis subsp. michiganensis (strain NCPPB 382)
Length = 223
Score = 49.6 bits (113), Expect = 2e-04
Identities = 28/57 (49%), Positives = 32/57 (56%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 599
+++N AT EQL TLP V LA I+ R GRF RV DL V GIG L L P
Sbjct: 163 VDLNTATAEQLETLPRVGPSLAARIIAWRAAHGRFARVADLGRVPGIGDRTLASLTP 219
>UniRef50_A4B044 Cluster: Late competence protein; n=1; Alteromonas
macleodii 'Deep ecotype'|Rep: Late competence protein -
Alteromonas macleodii 'Deep ecotype'
Length = 105
Score = 49.6 bits (113), Expect = 2e-04
Identities = 23/52 (44%), Positives = 34/52 (65%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKL 584
+++N AT EQL+TLPGV + A+ I+++R+ +G F V L V GIG L
Sbjct: 44 IDLNTATVEQLVTLPGVGQSKAKAIIKYREEVGPFLEVAQLTQVRGIGEKML 95
Score = 48.0 bits (109), Expect = 5e-04
Identities = 26/80 (32%), Positives = 45/80 (56%)
Frame = +3
Query: 630 SRASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLD 809
++ SS + S LP + R+ +N+++V QL +PG+ Q A I+ YR GPF +
Sbjct: 24 AQESSDTSNAISANLPQQQRI-DLNTATVEQLVTLPGVGQSKAKAIIKYREEVGPFLEVA 82
Query: 810 DLIKVRGMDIVRLSTVKQHL 869
L +VRG+ LS ++ ++
Sbjct: 83 QLTQVRGIGEKMLSKIESYV 102
>UniRef50_A1UIX9 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein; n=16;
Mycobacterium|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein - Mycobacterium sp.
(strain KMS)
Length = 267
Score = 49.6 bits (113), Expect = 2e-04
Identities = 29/58 (50%), Positives = 32/58 (55%)
Frame = +3
Query: 423 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 596
E +N+N AT EQL TLPGV A IV R G F VD L V GIG +L LR
Sbjct: 205 EPVNLNTATVEQLDTLPGVGPVTAAAIVAWRDAHGAFSSVDQLGDVDGIGPARLAKLR 262
>UniRef50_A1TBZ2 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein; n=2;
Corynebacterineae|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein - Mycobacterium
vanbaalenii (strain DSM 7251 / PYR-1)
Length = 269
Score = 49.6 bits (113), Expect = 2e-04
Identities = 27/57 (47%), Positives = 34/57 (59%)
Frame = +3
Query: 426 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 596
L+++N AT EQL TLPGV A I+ R GRF V+ L V GIG +L+ LR
Sbjct: 208 LVDLNTATAEQLDTLPGVGPVTAAAILAWRDANGRFSSVEQLGDVDGIGPARLDKLR 264
>UniRef50_Q5P3B5 Cluster: ComE operon protein 1-related protein;
n=1; Azoarcus sp. EbN1|Rep: ComE operon protein
1-related protein - Azoarcus sp. (strain EbN1)
(Aromatoleum aromaticum (strain EbN1))
Length = 155
Score = 49.2 bits (112), Expect = 2e-04
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Frame = +3
Query: 543 DDLALVSGIGADKLEL---LRPEICTHTRKQLSRASSCAHSLDSIRLPSESRLCSINSSS 713
D ++L S A KL L + P TH K L R+ A +L + +E+ + +NS+
Sbjct: 33 DKMSLTSSAAARKLHLPYGMNPPGGTHVNKLL-RSLLFALALSPLVALAEAPV-DVNSAD 90
Query: 714 VFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSLELRKSE 893
L+ V G+ A I++YR G F S+DDL KV G+ ++ +++ +++ K +
Sbjct: 91 AATLETVKGIGPAKAKAIIEYRKANGAFASVDDLTKVPGIGDKSVAQLREQITVGSAKKQ 150
Score = 44.4 bits (100), Expect = 0.006
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Frame = +3
Query: 378 SLSHTFSLPPSEEYPEL-MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLA 554
SL +L P E +++N+A L T+ G+ A+ I+ +R+ G F VDDL
Sbjct: 66 SLLFALALSPLVALAEAPVDVNSADAATLETVKGIGPAKAKAIIEYRKANGAFASVDDLT 125
Query: 555 LVSGIGADKLELLRPEICT-HTRKQLSRA 638
V GIG + LR +I +KQ++++
Sbjct: 126 KVPGIGDKSVAQLREQITVGSAKKQVAKS 154
>UniRef50_Q4L6U1 Cluster: Similar to late competence operon protein
required for DNA binding and uptake ComEA; n=1;
Staphylococcus haemolyticus JCSC1435|Rep: Similar to
late competence operon protein required for DNA binding
and uptake ComEA - Staphylococcus haemolyticus (strain
JCSC1435)
Length = 234
Score = 49.2 bits (112), Expect = 2e-04
Identities = 30/81 (37%), Positives = 43/81 (53%)
Frame = +3
Query: 369 NKSSLSHTFSLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDD 548
NKS H+ SL S +NIN A+E +L+ +PGV REI+ +RQ F ++D
Sbjct: 158 NKSG--HSKSLNSSST--NKVNINTASEAELLKIPGVGPAKVREIIDYRQKNNTFHSIED 213
Query: 549 LALVSGIGADKLELLRPEICT 611
L + GIG E ++ I T
Sbjct: 214 LKNIKGIGDKTFERIKEYITT 234
Score = 41.9 bits (94), Expect = 0.031
Identities = 22/86 (25%), Positives = 45/86 (52%)
Frame = +3
Query: 615 TRKQLSRASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGP 794
T+ + S + SL+S S + +IN++S +L +PG+ I+DYR +
Sbjct: 152 TQNDANNKSGHSKSLNS----SSTNKVNINTASEAELLKIPGVGPAKVREIIDYRQKNNT 207
Query: 795 FKSLDDLIKVRGMDIVRLSTVKQHLS 872
F S++DL ++G+ +K++++
Sbjct: 208 FHSIEDLKNIKGIGDKTFERIKEYIT 233
>UniRef50_Q9EYL7 Cluster: Competence protein 1; n=12; Listeria
monocytogenes|Rep: Competence protein 1 - Listeria
monocytogenes
Length = 211
Score = 49.2 bits (112), Expect = 2e-04
Identities = 21/56 (37%), Positives = 36/56 (64%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 596
+N+N+AT++ L +PG+ A I+ +R+ G F+ ++DL VSGIG +E L+
Sbjct: 150 INLNSATKDDLQQVPGIGESKATAIIEYREKEGLFQTIEDLKNVSGIGEKTVEKLK 205
Score = 44.4 bits (100), Expect = 0.006
Identities = 19/60 (31%), Positives = 39/60 (65%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
++NS++ LQ VPG+ + A I++YR ++G F++++DL V G+ + +K++L +
Sbjct: 151 NLNSATKDDLQQVPGIGESKATAIIEYREKEGLFQTIEDLKNVSGIGEKTVEKLKEYLDV 210
>UniRef50_Q04B44 Cluster: DNA uptake protein related DNA-binding
protein; n=2; Lactobacillus delbrueckii subsp.
bulgaricus|Rep: DNA uptake protein related DNA-binding
protein - Lactobacillus delbrueckii subsp. bulgaricus
(strain ATCC BAA-365)
Length = 248
Score = 49.2 bits (112), Expect = 2e-04
Identities = 22/61 (36%), Positives = 36/61 (59%)
Frame = +3
Query: 423 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 602
+L+N+N AT L L G+ + A +I+ +RQ G FK +D+L VSGIG ++ +
Sbjct: 186 DLINLNTATASDLQKLNGIGEKKAEQIIAYRQEKGSFKSIDELKEVSGIGDKTFAAIKDQ 245
Query: 603 I 605
+
Sbjct: 246 L 246
Score = 46.8 bits (106), Expect = 0.001
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Frame = +3
Query: 636 ASSCAHSLDSIRLPSESR-LCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDD 812
AS+ A S+ S + S L ++N+++ LQ + G+ ++ A I+ YR KG FKS+D+
Sbjct: 168 ASASASSVSSSASGAASGDLINLNTATASDLQKLNGIGEKKAEQIIAYRQEKGSFKSIDE 227
Query: 813 LIKVRGMDIVRLSTVKQHLSL 875
L +V G+ + +K L++
Sbjct: 228 LKEVSGIGDKTFAAIKDQLTI 248
>UniRef50_A3ZUV0 Cluster: Competence protein ComEA-related protein;
n=1; Blastopirellula marina DSM 3645|Rep: Competence
protein ComEA-related protein - Blastopirellula marina
DSM 3645
Length = 146
Score = 49.2 bits (112), Expect = 2e-04
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +3
Query: 384 SHTFSLPPSEEYPE--LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLAL 557
+H + E P +++IN A +L LPG+ LAR I+ R+ +G F +DL
Sbjct: 50 THWIDIEQVEPQPAAYIVDINQADWPELTQLPGIGETLARRIIESRETLGPFLDHNDLQR 109
Query: 558 VSGIGADKLELLRP 599
V GIG LE LRP
Sbjct: 110 VRGIGPRTLERLRP 123
Score = 36.7 bits (81), Expect = 1.2
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = +3
Query: 690 LCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHL 869
+ IN + +L +PG+ + +A I++ R GPF +DL +VRG+ L ++ +L
Sbjct: 66 IVDINQADWPELTQLPGIGETLARRIIESRETLGPFLDHNDLQRVRGIGPRTLERLRPYL 125
>UniRef50_Q92BM9 Cluster: ComEA protein; n=2; Listeria|Rep: ComEA
protein - Listeria innocua
Length = 200
Score = 48.8 bits (111), Expect = 3e-04
Identities = 28/97 (28%), Positives = 51/97 (52%)
Frame = +3
Query: 585 ELLRPEICTHTRKQLSRASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAAN 764
E L+ E+ + K+ A S D I + +INS++ LQ VPG+ A
Sbjct: 104 EKLKDEMSIYVYKK-GEAGSEEVVKDDIESSDTDKKVNINSATKIDLQQVPGIGDSKATA 162
Query: 765 IVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
I++YR ++G F++++DL V G+ + +K++L +
Sbjct: 163 IIEYREKEGLFQTIEDLKNVTGIGEKTVEKLKEYLDV 199
Score = 46.8 bits (106), Expect = 0.001
Identities = 22/63 (34%), Positives = 38/63 (60%)
Frame = +3
Query: 408 SEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
S + + +NIN+AT+ L +PG+ A I+ +R+ G F+ ++DL V+GIG +E
Sbjct: 132 SSDTDKKVNINSATKIDLQQVPGIGDSKATAIIEYREKEGLFQTIEDLKNVTGIGEKTVE 191
Query: 588 LLR 596
L+
Sbjct: 192 KLK 194
>UniRef50_Q8DV80 Cluster: Putative competence protein; n=1;
Streptococcus mutans|Rep: Putative competence protein -
Streptococcus mutans
Length = 225
Score = 48.8 bits (111), Expect = 3e-04
Identities = 23/56 (41%), Positives = 35/56 (62%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 596
+N+N AT L T+ G+ + A++I+ +R+ G FK VDDL +SGIG E L+
Sbjct: 164 VNLNTATLADLQTISGIGEKKAQDILDYREANGGFKSVDDLKNISGIGDKTFEKLK 219
Score = 44.4 bits (100), Expect = 0.006
Identities = 19/61 (31%), Positives = 38/61 (62%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
++N++++ LQ + G+ ++ A +I+DYR G FKS+DDL + G+ +K +S+
Sbjct: 165 NLNTATLADLQTISGIGEKKAQDILDYREANGGFKSVDDLKNISGIGDKTFEKLKDLVSV 224
Query: 876 E 878
+
Sbjct: 225 D 225
>UniRef50_Q3K1S5 Cluster: ComE operon protein 1, putative; n=10;
Streptococcus agalactiae|Rep: ComE operon protein 1,
putative - Streptococcus agalactiae serotype Ia
Length = 217
Score = 48.8 bits (111), Expect = 3e-04
Identities = 25/59 (42%), Positives = 36/59 (61%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
+N+N A L T+ GV + A++I+ +R G FK +DDL VSGIG LE LR ++
Sbjct: 156 INLNKADLSSLQTISGVWAKRAQDILDYRDSQGGFKTIDDLKNVSGIGEKTLEKLRQDV 214
Score = 43.2 bits (97), Expect = 0.014
Identities = 19/61 (31%), Positives = 39/61 (63%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
++N + + LQ + G+ + A +I+DYR+ +G FK++DDL V G+ L ++Q +++
Sbjct: 157 NLNKADLSSLQTISGVWAKRAQDILDYRDSQGGFKTIDDLKNVSGIGEKTLEKLRQDVTI 216
Query: 876 E 878
+
Sbjct: 217 D 217
>UniRef50_A7I0K9 Cluster: ComE operon protein 1; n=2; Campylobacter
hominis ATCC BAA-381|Rep: ComE operon protein 1 -
Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 /
NCTC 13146 /CH001A)
Length = 83
Score = 48.8 bits (111), Expect = 3e-04
Identities = 22/59 (37%), Positives = 38/59 (64%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
+NIN A++E+LMTL G+ A I+ +R+ +F +++D+ V GIG K E ++ +I
Sbjct: 19 VNINTASKEELMTLKGIGETTAEAIIEYRKE-NKFTKIEDIKNVKGIGDKKFESIKEDI 76
>UniRef50_A1HQZ8 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein; n=1; Thermosinus
carboxydivorans Nor1|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein - Thermosinus
carboxydivorans Nor1
Length = 187
Score = 48.8 bits (111), Expect = 3e-04
Identities = 22/59 (37%), Positives = 37/59 (62%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
+N+N A+ +L LPG+ LA+ I+ +RQ IG FK ++++ V GIG K ++ +I
Sbjct: 127 VNVNTASANELDKLPGIGPALAQRIIDYRQSIGGFKDLEEVKKVPGIGEAKFNQIKDKI 185
Score = 46.8 bits (106), Expect = 0.001
Identities = 20/60 (33%), Positives = 37/60 (61%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
++N++S +L +PG+ +A I+DYR G FK L+++ KV G+ + + +K +SL
Sbjct: 128 NVNTASANELDKLPGIGPALAQRIIDYRQSIGGFKDLEEVKKVPGIGEAKFNQIKDKISL 187
>UniRef50_Q2Y853 Cluster: Competence protein ComEA
helix-hairpin-helix region precursor; n=1; Nitrosospira
multiformis ATCC 25196|Rep: Competence protein ComEA
helix-hairpin-helix region precursor - Nitrosospira
multiformis (strain ATCC 25196 / NCIMB 11849)
Length = 99
Score = 48.4 bits (110), Expect = 4e-04
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLEL 590
+NIN AT+++L TL G+ AR I+ +R G+F+ +DL V GI L++
Sbjct: 22 VNINTATQQELQTLNGITSAKARAIIEYRSKAGKFRTAEDLTKVDGINPRYLDM 75
Score = 38.3 bits (85), Expect = 0.39
Identities = 16/47 (34%), Positives = 32/47 (68%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMD 836
+IN+++ +LQ + G+ A I++YR++ G F++ +DL KV G++
Sbjct: 23 NINTATQQELQTLNGITSAKARAIIEYRSKAGKFRTAEDLTKVDGIN 69
>UniRef50_Q1JY69 Cluster: Competence protein ComEA
helix-hairpin-helix region precursor; n=1;
Desulfuromonas acetoxidans DSM 684|Rep: Competence
protein ComEA helix-hairpin-helix region precursor -
Desulfuromonas acetoxidans DSM 684
Length = 89
Score = 48.4 bits (110), Expect = 4e-04
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEIC 608
+NIN AT EQL ++ G+ ++ A +IV +R G + VD L + GIG L + ++C
Sbjct: 28 VNINTATVEQLQSVNGIGQKTAEKIVAYRTSHGTYSSVDQLCNIKGIGKASLSKMGDQLC 87
Score = 45.6 bits (103), Expect = 0.003
Identities = 22/61 (36%), Positives = 36/61 (59%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
+IN+++V QLQ V G+ Q+ A IV YR G + S+D L ++G+ LS + L +
Sbjct: 29 NINTATVEQLQSVNGIGQKTAEKIVAYRTSHGTYSSVDQLCNIKGIGKASLSKMGDQLCV 88
Query: 876 E 878
+
Sbjct: 89 Q 89
>UniRef50_A7JQX9 Cluster: Possible competence protein; n=1;
Mannheimia haemolytica PHL213|Rep: Possible competence
protein - Mannheimia haemolytica PHL213
Length = 209
Score = 48.4 bits (110), Expect = 4e-04
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 599
+NIN A EEQL +L G+ A+ IV +R+ G+ K +LA + GIG +E + P
Sbjct: 149 VNINTANEEQLQSLTGIGEAKAKAIVEYRKKHGKIKNAAELANIPGIGDATIEKVAP 205
Score = 38.7 bits (86), Expect = 0.29
Identities = 21/79 (26%), Positives = 42/79 (53%)
Frame = +3
Query: 636 ASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDL 815
AS A + + + +S+ +IN+++ QLQ + G+ + A IV+YR + G K+ +L
Sbjct: 130 ASMKAAATEKMSAVKKSQKVNINTANEEQLQSLTGIGEAKAKAIVEYRKKHGKIKNAAEL 189
Query: 816 IKVRGMDIVRLSTVKQHLS 872
+ G+ + V +L+
Sbjct: 190 ANIPGIGDATIEKVAPYLT 208
>UniRef50_A6WDK9 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=1;
Kineococcus radiotolerans SRS30216|Rep: Competence
protein ComEA helix-hairpin-helix repeat protein
precursor - Kineococcus radiotolerans SRS30216
Length = 304
Score = 48.4 bits (110), Expect = 4e-04
Identities = 27/56 (48%), Positives = 35/56 (62%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 596
+++NAAT E+L LPGV LA IV R+ G F+ V+DL V GIG L+ LR
Sbjct: 244 LDLNAATPEELDGLPGVGEVLAGRIVAWREENGPFRDVEDLGEVPGIGPKVLDGLR 299
Score = 37.5 bits (83), Expect = 0.68
Identities = 15/45 (33%), Positives = 30/45 (66%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
+N+++ +L +PG+ + +A IV +R GPF+ ++DL +V G+
Sbjct: 246 LNAATPEELDGLPGVGEVLAGRIVAWREENGPFRDVEDLGEVPGI 290
>UniRef50_A1A1R1 Cluster: Putative uncharacterized protein; n=2;
Bifidobacterium adolescentis|Rep: Putative
uncharacterized protein - Bifidobacterium adolescentis
(strain ATCC 15703 / DSM 20083)
Length = 253
Score = 48.4 bits (110), Expect = 4e-04
Identities = 24/60 (40%), Positives = 34/60 (56%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEIC 608
+++N A +L TL GV A+ I+ +R IGRF VD L V GIG+ L R ++C
Sbjct: 192 LDLNTADLGELQTLKGVGPVTAQRILDYRTQIGRFDNVDQLLEVKGIGSKTLAKFRDQVC 251
Score = 38.3 bits (85), Expect = 0.39
Identities = 16/51 (31%), Positives = 32/51 (62%)
Frame = +3
Query: 681 ESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
+S +N++ + +LQ + G+ A I+DYR + G F ++D L++V+G+
Sbjct: 188 QSNQLDLNTADLGELQTLKGVGPVTAQRILDYRTQIGRFDNVDQLLEVKGI 238
>UniRef50_UPI00005876FC Cluster: PREDICTED: hypothetical protein;
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 363
Score = 48.0 bits (109), Expect = 5e-04
Identities = 29/111 (26%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Frame = +3
Query: 387 HTFSLPPSEEYPELMNI-NAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVS 563
H +L P+++ +L+N+ N+A E +L + +N ++A I+ HR+ G+ R+++L ++
Sbjct: 65 HETTLTPADQTEKLVNVLNSAPESELKMVKYINSKMAAGIIAHREEKGQISRLEELLVIP 124
Query: 564 GIGADKLELLRPEICT----HTRKQLSRASSCAHSLDSIRLPSESRLCSIN 704
G+G L+ L TR ++ S+ L + RL S + +I+
Sbjct: 125 GVGRRILDKLLTSFANGKQEKTRTRIDPQSTSHTDLSNERLSSLKDVVAID 175
>UniRef50_Q41FK3 Cluster: Competence protein ComEA
helix-hairpin-helix region precursor; n=1;
Exiguobacterium sibiricum 255-15|Rep: Competence protein
ComEA helix-hairpin-helix region precursor -
Exiguobacterium sibiricum 255-15
Length = 205
Score = 48.0 bits (109), Expect = 5e-04
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +3
Query: 363 KLNKSSLSHTFSLPPSEEYPE-LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKR 539
K KSS E P+ L+++NAATEEQL+ +PG+ A I+++R+ G F
Sbjct: 121 KKAKSSKKAAPETSEQAEIPKGLLDLNAATEEQLLEVPGIGPAKAGAILQYREEKGGFAT 180
Query: 540 VDDLALVSGIGADKLELLR 596
++L V G G LE L+
Sbjct: 181 YENLGDVKGFGPKTLENLK 199
Score = 39.5 bits (88), Expect = 0.17
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = +3
Query: 600 EICTHTRKQLSRASSCA-HSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDY 776
E+ TRK+ + A + + +P L +N+++ QL VPG+ A I+ Y
Sbjct: 114 EVIVPTRKKAKSSKKAAPETSEQAEIPKG--LLDLNAATEEQLLEVPGIGPAKAGAILQY 171
Query: 777 RNRKGPFKSLDDLIKVRGMDIVRLSTVKQHL 869
R KG F + ++L V+G L +K +L
Sbjct: 172 REEKGGFATYENLGDVKGFGPKTLENLKAYL 202
>UniRef50_A6NW57 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 147
Score = 48.0 bits (109), Expect = 5e-04
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +3
Query: 411 EEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 572
E+ L+NIN A E L TLP + + A I+ +R+ G F+ V+D+ VSGIG
Sbjct: 80 EQQSGLININTADSETLQTLPSIGEKRAAAIIAYREEHGPFRIVEDITNVSGIG 133
Score = 44.8 bits (101), Expect = 0.004
Identities = 21/66 (31%), Positives = 40/66 (60%)
Frame = +3
Query: 681 ESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVK 860
+S L +IN++ LQ +P + ++ AA I+ YR GPF+ ++D+ V G+ LS +
Sbjct: 82 QSGLININTADSETLQTLPSIGEKRAAAIIAYREEHGPFRIVEDITNVSGIGEGILSQII 141
Query: 861 QHLSLE 878
++++E
Sbjct: 142 DYITVE 147
>UniRef50_Q8DGH8 Cluster: Tll2339 protein; n=9; Cyanobacteria|Rep:
Tll2339 protein - Synechococcus elongatus
(Thermosynechococcus elongatus)
Length = 565
Score = 47.6 bits (108), Expect = 6e-04
Identities = 26/59 (44%), Positives = 36/59 (61%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
+N+N AT +L TLPGV +LA EI+R R+ F+ + DL V G+G LE LR +
Sbjct: 506 VNLNTATAAELETLPGVGSKLAAEIIRAREH-KPFQSLADLDAVPGVGPKLLERLRDRV 563
>UniRef50_Q8DG32 Cluster: DNA uptake protein; n=11; Vibrio|Rep: DNA
uptake protein - Vibrio vulnificus
Length = 91
Score = 47.6 bits (108), Expect = 6e-04
Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Frame = +3
Query: 429 MNINAATEEQL-MTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
+NIN AT E++ M L GV + A++IV R+ G FK VD+LA V GIG +E
Sbjct: 30 VNINTATAEEIAMMLKGVGIKKAQQIVDFREANGPFKTVDELAQVKGIGKSTIE 83
Score = 36.3 bits (80), Expect = 1.6
Identities = 16/47 (34%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Frame = +3
Query: 696 SINSSSVFQL-QCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
+IN+++ ++ + G+ + A IVD+R GPFK++D+L +V+G+
Sbjct: 31 NINTATAEEIAMMLKGVGIKKAQQIVDFREANGPFKTVDELAQVKGI 77
>UniRef50_Q7WGV0 Cluster: Putative uncharacterized protein; n=2;
Bordetella|Rep: Putative uncharacterized protein -
Bordetella bronchiseptica (Alcaligenes bronchisepticus)
Length = 194
Score = 47.6 bits (108), Expect = 6e-04
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLA-LVSGIGADKLELLR 596
+++N AT +QL T+ GV + AR I+ RQ GRF ++DL+ VSGIG K++ L+
Sbjct: 105 LDVNTATVDQLETVRGVGPRTARVIIEERQRGGRFLSLEDLSERVSGIGLKKMQSLQ 161
>UniRef50_Q9EYM5 Cluster: Competence factor ComEA; n=3; Thermus
thermophilus|Rep: Competence factor ComEA - Thermus
thermophilus
Length = 298
Score = 47.6 bits (108), Expect = 6e-04
Identities = 27/57 (47%), Positives = 35/57 (61%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 599
+++N A+ E+LM LPG+ LAR IV R + RV+DL V GIG LE LRP
Sbjct: 242 VSLNEASLEELMALPGIGPVLARRIVEGRP----YARVEDLLKVKGIGPATLERLRP 294
Score = 38.7 bits (86), Expect = 0.29
Identities = 20/66 (30%), Positives = 37/66 (56%)
Frame = +3
Query: 672 LPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLS 851
LP S+N +S+ +L +PG+ +A IV+ R P+ ++DL+KV+G+ L
Sbjct: 235 LPQAQTPVSLNEASLEELMALPGIGPVLARRIVEGR----PYARVEDLLKVKGIGPATLE 290
Query: 852 TVKQHL 869
++ +L
Sbjct: 291 RLRPYL 296
>UniRef50_Q1QVK1 Cluster: Competence protein ComEA
helix-hairpin-helix region precursor; n=1;
Chromohalobacter salexigens DSM 3043|Rep: Competence
protein ComEA helix-hairpin-helix region precursor -
Chromohalobacter salexigens (strain DSM 3043 / ATCC
BAA-138 / NCIMB13768)
Length = 90
Score = 47.6 bits (108), Expect = 6e-04
Identities = 24/54 (44%), Positives = 32/54 (59%)
Frame = +3
Query: 411 EEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 572
E P+ ++IN AT E L LPG+ A+ IV R+ G F ++DL VSGIG
Sbjct: 24 ENAPQAIDINHATAETLAELPGIGEVKAQAIVEDREANGPFASLEDLTRVSGIG 77
Score = 36.3 bits (80), Expect = 1.6
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
IN ++ L +PG+ + A IV+ R GPF SL+DL +V G+
Sbjct: 32 INHATAETLAELPGIGEVKAQAIVEDREANGPFASLEDLTRVSGI 76
>UniRef50_A4XKH1 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein; n=1;
Caldicellulosiruptor saccharolyticus DSM 8903|Rep:
Competence protein ComEA helix-hairpin-helix repeat
protein - Caldicellulosiruptor saccharolyticus (strain
ATCC 43494 / DSM 8903)
Length = 214
Score = 47.6 bits (108), Expect = 6e-04
Identities = 22/59 (37%), Positives = 37/59 (62%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
+NIN A++E+L TL + +LA I+ +RQ G FK ++++ V+GIG E ++ I
Sbjct: 153 ININTASKEELKTLDRIGDKLAERIIEYRQEHGPFKSIEEIKNVNGIGDKIFEAIKDSI 211
Score = 41.5 bits (93), Expect = 0.042
Identities = 17/66 (25%), Positives = 39/66 (59%)
Frame = +3
Query: 681 ESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVK 860
+S +IN++S +L+ + + ++A I++YR GPFKS++++ V G+ +K
Sbjct: 149 QSGKININTASKEELKTLDRIGDKLAERIIEYRQEHGPFKSIEEIKNVNGIGDKIFEAIK 208
Query: 861 QHLSLE 878
++++
Sbjct: 209 DSITVQ 214
>UniRef50_A3U4E0 Cluster: Putative uncharacterized protein; n=1;
Croceibacter atlanticus HTCC2559|Rep: Putative
uncharacterized protein - Croceibacter atlanticus
HTCC2559
Length = 266
Score = 47.6 bits (108), Expect = 6e-04
Identities = 35/153 (22%), Positives = 69/153 (45%)
Frame = +3
Query: 417 YPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 596
Y + +++N AT QL + G+ + +I+ +R + F D++ L G L
Sbjct: 133 YKDKIDLNKATALQLQEVYGIGPYYSEKIIAYRTKLNGFS--DNVQLNDVYG------LE 184
Query: 597 PEICTHTRKQLSRASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDY 776
P + + K+ + ++ P + +IN++ + L +P LN EIA I+ Y
Sbjct: 185 PNVINNILKKFT-----------VKTPVNIKKININTAKITDLSELPNLNYEIARQIIKY 233
Query: 777 RNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
R G F ++ L + I + ++ +L+L
Sbjct: 234 RELNGEFNDINQLKSIAEFPIEKFDRIQLYLTL 266
>UniRef50_Q39UG7 Cluster: DNA uptake protein and related DNA-binding
proteins-like; n=1; Geobacter metallireducens GS-15|Rep:
DNA uptake protein and related DNA-binding proteins-like
- Geobacter metallireducens (strain GS-15 / ATCC 53774 /
DSM 7210)
Length = 192
Score = 47.2 bits (107), Expect = 8e-04
Identities = 28/59 (47%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +3
Query: 447 TEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG---ADKLELLRPEICTH 614
TE + LPG+ LAR IV RQ G F+ + DL VSGIG DKLE P TH
Sbjct: 134 TESEWELLPGIGPTLARRIVFDRQYNGGFRSIRDLERVSGIGKVTVDKLERYFPNTVTH 192
>UniRef50_Q2JDK7 Cluster: Helix-hairpin-helix DNA-binding, class 1;
n=2; Frankia|Rep: Helix-hairpin-helix DNA-binding, class
1 - Frankia sp. (strain CcI3)
Length = 422
Score = 47.2 bits (107), Expect = 8e-04
Identities = 26/57 (45%), Positives = 35/57 (61%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 599
+++NAAT E+L LPGV LAR IV R G F+ + LA V+G+G +L L P
Sbjct: 362 IDLNAATAEELDGLPGVGPVLARRIVEWRTAHGPFRSPEQLAEVTGVGDKRLADLLP 418
Score = 38.3 bits (85), Expect = 0.39
Identities = 17/51 (33%), Positives = 32/51 (62%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLS 851
+N+++ +L +PG+ +A IV++R GPF+S + L +V G+ RL+
Sbjct: 364 LNAATAEELDGLPGVGPVLARRIVEWRTAHGPFRSPEQLAEVTGVGDKRLA 414
>UniRef50_A0RNB7 Cluster: Conserved domain protein; n=1;
Campylobacter fetus subsp. fetus 82-40|Rep: Conserved
domain protein - Campylobacter fetus subsp. fetus
(strain 82-40)
Length = 134
Score = 47.2 bits (107), Expect = 8e-04
Identities = 22/78 (28%), Positives = 43/78 (55%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEIC 608
+N+N AT+E+LM LPG+ A I+ +R+ FK +D++ + GI + +++ ++
Sbjct: 28 VNLNTATKEELMALPGIGEINANAIIEYRKHT-EFKSIDEIKNIKGISNKRFNVIKADLA 86
Query: 609 THTRKQLSRASSCAHSLD 662
T ++ S A+ D
Sbjct: 87 TTGNTDINSIKSKANIKD 104
Score = 37.9 bits (84), Expect = 0.51
Identities = 23/103 (22%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHL-- 869
++N+++ +L +PG+ + A I++YR + FKS+D++ ++G+ R + +K L
Sbjct: 29 NLNTATKEELMALPGIGEINANAIIEYR-KHTEFKSIDEIKNIKGISNKRFNVIKADLAT 87
Query: 870 --SLELRKSESVQHLTNGHVNGWNDDXMPHQNGISPKTPHRKS 992
+ ++ +S ++ + N D + + N KT K+
Sbjct: 88 TGNTDINSIKSKANIKDKKSKISNKDKVKNTNKTKSKTKSEKN 130
>UniRef50_Q1WU47 Cluster: ComE operon protein 1; n=1; Lactobacillus
salivarius subsp. salivarius UCC118|Rep: ComE operon
protein 1 - Lactobacillus salivarius subsp. salivarius
(strain UCC118)
Length = 229
Score = 47.2 bits (107), Expect = 8e-04
Identities = 22/48 (45%), Positives = 32/48 (66%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 572
+N+N AT+EQL L G+ + A I+ +R G+FK +D+L VSGIG
Sbjct: 169 INLNTATKEQLTQLNGIGDKKAELIISYRDEHGKFKTIDELKNVSGIG 216
Score = 34.7 bits (76), Expect = 4.8
Identities = 16/60 (26%), Positives = 34/60 (56%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
++N+++ QL + G+ + A I+ YR+ G FK++D+L V G+ + + L++
Sbjct: 170 NLNTATKEQLTQLNGIGDKKAELIISYRDEHGKFKTIDELKNVSGIGDKTFAAISDKLTV 229
>UniRef50_Q0LPE0 Cluster: Competence protein ComEA
helix-hairpin-helix region precursor; n=1; Herpetosiphon
aurantiacus ATCC 23779|Rep: Competence protein ComEA
helix-hairpin-helix region precursor - Herpetosiphon
aurantiacus ATCC 23779
Length = 228
Score = 47.2 bits (107), Expect = 8e-04
Identities = 24/66 (36%), Positives = 37/66 (56%)
Frame = +3
Query: 408 SEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
S P L+NIN A+ +L +LP + + +A+ IV +R+ G F ++ L V GIGA
Sbjct: 160 SARQPTLININTASAAELESLPKIGQAIAQRIVAYREENGPFTTIEALQEVKGIGASTFA 219
Query: 588 LLRPEI 605
+ P I
Sbjct: 220 EIEPFI 225
Score = 46.4 bits (105), Expect = 0.001
Identities = 20/63 (31%), Positives = 39/63 (61%)
Frame = +3
Query: 690 LCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHL 869
L +IN++S +L+ +P + Q IA IV YR GPF +++ L +V+G+ + ++ +
Sbjct: 166 LININTASAAELESLPKIGQAIAQRIVAYREENGPFTTIEALQEVKGIGASTFAEIEPFI 225
Query: 870 SLE 878
++E
Sbjct: 226 TIE 228
>UniRef50_A4F9N2 Cluster: Competence protein ComEA
helix-hairpin-helix region; n=3; Bacteria|Rep:
Competence protein ComEA helix-hairpin-helix region -
Saccharopolyspora erythraea (strain NRRL 23338)
Length = 200
Score = 47.2 bits (107), Expect = 8e-04
Identities = 25/56 (44%), Positives = 32/56 (57%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 596
+++N ATEEQ LPGV A+ IV+ R GRF V+ L V GIG + LR
Sbjct: 140 IDLNTATEEQFDELPGVGEVTAKRIVQWRTENGRFASVEQLREVDGIGDTRFSRLR 195
>UniRef50_A4AAS4 Cluster: Putative uncharacterized protein; n=1;
Congregibacter litoralis KT71|Rep: Putative
uncharacterized protein - Congregibacter litoralis KT71
Length = 110
Score = 47.2 bits (107), Expect = 8e-04
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +3
Query: 411 EEYPELMNINAATEEQLMT-LPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
EE ++NIN+AT +L L G+ A IVR+R+ G F+ +D+L+ V+GIGA +E
Sbjct: 42 EEQSAVVNINSATALELAEGLTGIGGSKAEAIVRYREEFGPFESIDELSEVTGIGAATVE 101
Query: 588 LLRPEI 605
R +
Sbjct: 102 RNRQRL 107
Score = 43.2 bits (97), Expect = 0.014
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +3
Query: 669 RLPSESRLCSINSSSVFQL-QCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVR 845
+L +S + +INS++ +L + + G+ A IV YR GPF+S+D+L +V G+
Sbjct: 40 KLEEQSAVVNINSATALELAEGLTGIGGSKAEAIVRYREEFGPFESIDELSEVTGIGAAT 99
Query: 846 LSTVKQHLSLE 878
+ +Q L L+
Sbjct: 100 VERNRQRLRLQ 110
>UniRef50_A2UAV6 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=2;
Bacillus|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein precursor - Bacillus
coagulans 36D1
Length = 238
Score = 47.2 bits (107), Expect = 8e-04
Identities = 24/55 (43%), Positives = 33/55 (60%)
Frame = +3
Query: 408 SEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 572
S E +NIN A + QL TLPG+ A I+ +R+ G F++ +DL VSGIG
Sbjct: 170 SGEAAAQVNINTADQTQLETLPGIGPSKAAAIIEYREKNGPFQKPEDLKNVSGIG 224
Score = 44.8 bits (101), Expect = 0.004
Identities = 19/61 (31%), Positives = 37/61 (60%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
+IN++ QL+ +PG+ AA I++YR + GPF+ +DL V G+ + ++ ++L
Sbjct: 178 NINTADQTQLETLPGIGPSKAAAIIEYREKNGPFQKPEDLKNVSGIGDQTFAKIENSITL 237
Query: 876 E 878
+
Sbjct: 238 Q 238
>UniRef50_Q3IE25 Cluster: Putative uncharacterized protein; n=2;
Alteromonadales|Rep: Putative uncharacterized protein -
Pseudoalteromonas haloplanktis (strain TAC 125)
Length = 99
Score = 46.8 bits (106), Expect = 0.001
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG---ADKLE 587
+NIN A QL LPG+ ++ A+ I+ +R+ G F ++DL +V GIG A KLE
Sbjct: 39 LNINTADVSQLSKLPGIGKKKAQAIIDYREAKGNFTSLEDLKMVKGIGKKLAAKLE 94
Score = 46.0 bits (104), Expect = 0.002
Identities = 21/46 (45%), Positives = 32/46 (69%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
+IN++ V QL +PG+ ++ A I+DYR KG F SL+DL V+G+
Sbjct: 40 NINTADVSQLSKLPGIGKKKAQAIIDYREAKGNFTSLEDLKMVKGI 85
>UniRef50_Q1AVU6 Cluster: Competence protein ComEA
helix-hairpin-helix region precursor; n=1; Rubrobacter
xylanophilus DSM 9941|Rep: Competence protein ComEA
helix-hairpin-helix region precursor - Rubrobacter
xylanophilus (strain DSM 9941 / NBRC 16129)
Length = 107
Score = 46.8 bits (106), Expect = 0.001
Identities = 25/64 (39%), Positives = 36/64 (56%)
Frame = +3
Query: 408 SEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
+ E P +++IN A E+L LP V A I+ +R G F+ V++L V GIG LE
Sbjct: 40 AREEPLVVDINTADAEELEELPEVGPATAEAIIEYRLANGPFRTVEELEEVPGIGPATLE 99
Query: 588 LLRP 599
+RP
Sbjct: 100 QIRP 103
Score = 35.5 bits (78), Expect = 2.7
Identities = 16/60 (26%), Positives = 34/60 (56%)
Frame = +3
Query: 681 ESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVK 860
E + IN++ +L+ +P + A I++YR GPF+++++L +V G+ L ++
Sbjct: 43 EPLVVDINTADAEELEELPEVGPATAEAIIEYRLANGPFRTVEELEEVPGIGPATLEQIR 102
>UniRef50_A7GY27 Cluster: Conserved domain protein; n=1;
Campylobacter curvus 525.92|Rep: Conserved domain
protein - Campylobacter curvus 525.92
Length = 115
Score = 46.8 bits (106), Expect = 0.001
Identities = 23/61 (37%), Positives = 38/61 (62%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEIC 608
+N+N AT+E+LM+L G+ A I+ +R+ +F ++DL V+GIG E L+ +I
Sbjct: 4 VNLNTATKEELMSLDGIGSSKADAIIEYRKA-NKFDSIEDLKKVNGIGDKTYENLKSDIS 62
Query: 609 T 611
T
Sbjct: 63 T 63
>UniRef50_Q88VD0 Cluster: ComE operon protein 1; n=2;
Lactobacillales|Rep: ComE operon protein 1 -
Lactobacillus plantarum
Length = 241
Score = 46.4 bits (105), Expect = 0.001
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 572
+N+N A L TL G+ ++ A +I+ +RQ G FK +DDL VSG G
Sbjct: 181 VNLNTADVAALQTLSGIGQKKAEKIIDYRQQHGNFKTIDDLKNVSGFG 228
Score = 44.4 bits (100), Expect = 0.006
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
++N++ V LQ + G+ Q+ A I+DYR + G FK++DDL V G + K L++
Sbjct: 182 NLNTADVAALQTLSGIGQKKAEKIIDYRQQHGNFKTIDDLKNVSGFGEKTVVKYKDQLTV 241
>UniRef50_Q6A9B7 Cluster: ComE operon protein 1; n=1;
Propionibacterium acnes|Rep: ComE operon protein 1 -
Propionibacterium acnes
Length = 283
Score = 46.4 bits (105), Expect = 0.001
Identities = 22/59 (37%), Positives = 36/59 (61%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
+++N A + +L T+ GV +A +I+ RQ G+F VD L +SGIGA E ++P +
Sbjct: 223 VDLNTANQSELETIDGVGPVMAGKIMAWRQEHGQFASVDQLREISGIGAKTFEKIKPYV 281
>UniRef50_Q3WBP6 Cluster: Helix-hairpin-helix motif precursor; n=1;
Frankia sp. EAN1pec|Rep: Helix-hairpin-helix motif
precursor - Frankia sp. EAN1pec
Length = 250
Score = 46.4 bits (105), Expect = 0.001
Identities = 26/57 (45%), Positives = 32/57 (56%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 599
+N+N AT EQL LPGV LA+ I+ R G F D L VSG+G +L L P
Sbjct: 190 LNLNTATVEQLDALPGVGPVLAQRIIDWRAANGPFTSPDQLGEVSGVGDRRLADLLP 246
Score = 45.6 bits (103), Expect = 0.003
Identities = 25/74 (33%), Positives = 41/74 (55%)
Frame = +3
Query: 630 SRASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLD 809
S + + A S + S R ++N+++V QL +PG+ +A I+D+R GPF S D
Sbjct: 169 SSSGASAGSAGGSAVGSAGRPLNLNTATVEQLDALPGVGPVLAQRIIDWRAANGPFTSPD 228
Query: 810 DLIKVRGMDIVRLS 851
L +V G+ RL+
Sbjct: 229 QLGEVSGVGDRRLA 242
>UniRef50_Q1IVK9 Cluster: Putative uncharacterized protein
precursor; n=1; Acidobacteria bacterium Ellin345|Rep:
Putative uncharacterized protein precursor -
Acidobacteria bacterium (strain Ellin345)
Length = 513
Score = 46.4 bits (105), Expect = 0.001
Identities = 20/65 (30%), Positives = 40/65 (61%)
Frame = +3
Query: 402 PPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADK 581
P SEE P N+N A+ E++ TLP +++ A+ +VR R+ G F+ +D++ + + +
Sbjct: 434 PGSEEAPLRTNLNTASAEEIATLPQFSKETAQAMVRERRQRGYFRSIDEVISSAKLNPGQ 493
Query: 582 LELLR 596
E+++
Sbjct: 494 AEVIK 498
>UniRef50_A7BDT8 Cluster: Putative uncharacterized protein; n=1;
Actinomyces odontolyticus ATCC 17982|Rep: Putative
uncharacterized protein - Actinomyces odontolyticus ATCC
17982
Length = 231
Score = 46.4 bits (105), Expect = 0.001
Identities = 22/60 (36%), Positives = 34/60 (56%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEIC 608
+ + ATE +L TLPG+ LA+ I+ +R R V++L V GIG +E +R +C
Sbjct: 172 VRLATATEAELQTLPGIGPSLAQRIISYRATHPRLSTVEELDDVPGIGPSLIEKIRTGVC 231
>UniRef50_A6G3N0 Cluster: Competence protein comEA; n=1;
Plesiocystis pacifica SIR-1|Rep: Competence protein
comEA - Plesiocystis pacifica SIR-1
Length = 138
Score = 46.4 bits (105), Expect = 0.001
Identities = 23/61 (37%), Positives = 39/61 (63%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
+IN +S +L+ +PG+ IA IVDYR + PFK L+ L++V+G+ VK ++++
Sbjct: 70 NINEASAAELELLPGVGPAIAQRIVDYRADR-PFKQLNHLMRVKGVGKKTYLKVKPYIAI 128
Query: 876 E 878
E
Sbjct: 129 E 129
Score = 35.1 bits (77), Expect = 3.6
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
+NIN A+ +L LPGV +A+ IV +R FK+++ L V G+G ++P I
Sbjct: 69 ININEASAAELELLPGVGPAIAQRIVDYR-ADRPFKQLNHLMRVKGVGKKTYLKVKPYI 126
>UniRef50_Q9KD84 Cluster: Late competence operon required for DNA
binding and uptake; n=1; Bacillus halodurans|Rep: Late
competence operon required for DNA binding and uptake -
Bacillus halodurans
Length = 210
Score = 46.0 bits (104), Expect = 0.002
Identities = 22/59 (37%), Positives = 35/59 (59%)
Frame = +3
Query: 423 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 599
+++ +N ATE +L +LPG+ A I+ +R+ G F +++L VSGIG E L P
Sbjct: 147 QMVVLNRATEVELQSLPGIGPAKATAIISYREEHGAFSSLEELMNVSGIGEKSYEKLAP 205
Score = 39.5 bits (88), Expect = 0.17
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = +3
Query: 681 ESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
++++ +N ++ +LQ +PG+ A I+ YR G F SL++L+ V G+
Sbjct: 145 DTQMVVLNRATEVELQSLPGIGPAKATAIISYREEHGAFSSLEELMNVSGI 195
>UniRef50_Q1FL89 Cluster: Competence protein ComEA
helix-hairpin-helix region precursor; n=1; Clostridium
phytofermentans ISDg|Rep: Competence protein ComEA
helix-hairpin-helix region precursor - Clostridium
phytofermentans ISDg
Length = 238
Score = 46.0 bits (104), Expect = 0.002
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGI 569
+NIN AT+E+LMT+PG+ A I+ +R G F +++L +SGI
Sbjct: 176 VNINKATKEELMTIPGIGEAKALSIISYRTEHGLFSTIEELQNISGI 222
Score = 36.3 bits (80), Expect = 1.6
Identities = 14/60 (23%), Positives = 34/60 (56%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
+IN ++ +L +PG+ + A +I+ YR G F ++++L + G+ + +K +++
Sbjct: 177 NINKATKEELMTIPGIGEAKALSIISYRTEHGLFSTIEELQNISGIKSAVFNRMKDFITV 236
>UniRef50_Q1CY14 Cluster: Competence protein comEA; n=1; Myxococcus
xanthus DK 1622|Rep: Competence protein comEA -
Myxococcus xanthus (strain DK 1622)
Length = 116
Score = 46.0 bits (104), Expect = 0.002
Identities = 18/60 (30%), Positives = 40/60 (66%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
++N +S +L +PG+ ++ A I+++R ++ PFK +++L++V+G + +K HL+L
Sbjct: 33 NLNEASAAELDLLPGVGEKAAQRIIEHRQKR-PFKRVEELVRVKGFGKKKFLKLKAHLAL 91
Score = 44.8 bits (101), Expect = 0.004
Identities = 23/59 (38%), Positives = 34/59 (57%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
+N+N A+ +L LPGV + A+ I+ HRQ FKRV++L V G G K L+ +
Sbjct: 32 VNLNEASAAELDLLPGVGEKAAQRIIEHRQK-RPFKRVEELVRVKGFGKKKFLKLKAHL 89
>UniRef50_A4CP66 Cluster: ComEA protein-related protein; n=1;
Robiginitalea biformata HTCC2501|Rep: ComEA
protein-related protein - Robiginitalea biformata
HTCC2501
Length = 244
Score = 46.0 bits (104), Expect = 0.002
Identities = 40/149 (26%), Positives = 71/149 (47%)
Frame = +3
Query: 432 NINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEICT 611
++N A+ L + G+ L+ IV+ R +G F+ L V G L PE+
Sbjct: 113 DLNQASASDLQAVRGIGPVLSARIVKFRDALGGFQHAGQLYDVYG--------LPPEV-- 162
Query: 612 HTRKQLSRASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKG 791
A A ++ P R+ IN ++V +L + L+ ++A +IV RN G
Sbjct: 163 --------ARRAALQFRVVQPPPVQRI-DINDATVEELAALVYLDWQMARDIVARRNTLG 213
Query: 792 PFKSLDDLIKVRGMDIVRLSTVKQHLSLE 878
P++SL++L ++ + R+ + +LSLE
Sbjct: 214 PYESLEELREIGSIPGGRIERIALYLSLE 242
>UniRef50_A1I9T7 Cluster: ComE domain protein precursor; n=1;
Candidatus Desulfococcus oleovorans Hxd3|Rep: ComE
domain protein precursor - Candidatus Desulfococcus
oleovorans Hxd3
Length = 114
Score = 46.0 bits (104), Expect = 0.002
Identities = 20/49 (40%), Positives = 34/49 (69%)
Frame = +3
Query: 687 RLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
+L +IN++SV +L + G+ +EIA I++YR G FKS++ L V+G+
Sbjct: 47 QLVNINTASVDELTALTGVGKEIAQRIIEYREANGAFKSVEQLQNVKGI 95
>UniRef50_A0V2T6 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein; n=1; Clostridium
cellulolyticum H10|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein - Clostridium
cellulolyticum H10
Length = 253
Score = 46.0 bits (104), Expect = 0.002
Identities = 19/67 (28%), Positives = 40/67 (59%)
Frame = +3
Query: 678 SESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTV 857
S+++L +IN +S +L+ +P + A I++YR +KG F L D++K+ G+ +
Sbjct: 187 SKTKLVNINKASQAELEELPNVGPSTAKAIIEYREQKGGFTKLTDIMKITGIKQKTFDKI 246
Query: 858 KQHLSLE 878
K ++ ++
Sbjct: 247 KSYICID 253
>UniRef50_A0JX55 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein; n=1; Arthrobacter
sp. FB24|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein - Arthrobacter sp.
(strain FB24)
Length = 326
Score = 46.0 bits (104), Expect = 0.002
Identities = 24/57 (42%), Positives = 35/57 (61%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 599
+++N+A+ E+L LP V LA+ IV R+ GRF V++L V G+G LE L P
Sbjct: 265 IDLNSASAEELGALPRVGPVLAQRIVDWRKEHGRFSTVEELDAVDGVGPKMLETLLP 321
Score = 34.7 bits (76), Expect = 4.8
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +3
Query: 678 SESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTV 857
+E +NS+S +L +P + +A IVD+R G F ++++L V G+ L T+
Sbjct: 260 AEGGKIDLNSASAEELGALPRVGPVLAQRIVDWRKEHGRFSTVEELDAVDGVGPKMLETL 319
>UniRef50_Q6NFW5 Cluster: Putative membrane protein; n=1;
Corynebacterium diphtheriae|Rep: Putative membrane
protein - Corynebacterium diphtheriae
Length = 209
Score = 45.6 bits (103), Expect = 0.003
Identities = 23/68 (33%), Positives = 40/68 (58%)
Frame = +3
Query: 672 LPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLS 851
+P+ +NS++V +L+ + G+ + AA IV YR+ G F SL++L KV+G+ +
Sbjct: 142 VPAADGRVRLNSATVAELEQLDGIGAKTAAAIVSYRDSHGGFGSLEELQKVKGIGPAKYQ 201
Query: 852 TVKQHLSL 875
+ Q L L
Sbjct: 202 AIAQDLVL 209
>UniRef50_Q55769 Cluster: ComE ORF1; n=1; Synechocystis sp. PCC
6803|Rep: ComE ORF1 - Synechocystis sp. (strain PCC
6803)
Length = 553
Score = 45.6 bits (103), Expect = 0.003
Identities = 22/60 (36%), Positives = 37/60 (61%)
Frame = +3
Query: 426 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
L+N+N ++E+L +LPG+ A +I+ R+ F ++DL V GIG K+E LR ++
Sbjct: 493 LVNLNRGSQEELESLPGIGPSTAEKIISTREQ-KAFTSLEDLGRVKGIGPSKIEGLRGKV 551
>UniRef50_A6VTC2 Cluster: RNA binding S1 domain protein; n=2;
Marinomonas|Rep: RNA binding S1 domain protein -
Marinomonas sp. MWYL1
Length = 720
Score = 45.6 bits (103), Expect = 0.003
Identities = 21/45 (46%), Positives = 30/45 (66%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
IN +SV L V GL +A NIVDYR +KG +S +L+K++G+
Sbjct: 496 INLASVSLLSYVSGLTNRLAQNIVDYRQQKGRIESRSELLKIKGI 540
Score = 34.3 bits (75), Expect = 6.3
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 572
++IN A+ L + G+ +LA+ IV +RQ GR + +L + GIG
Sbjct: 494 VDINLASVSLLSYVSGLTNRLAQNIVDYRQQKGRIESRSELLKIKGIG 541
>UniRef50_A5WC41 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=1;
Psychrobacter sp. PRwf-1|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein precursor -
Psychrobacter sp. PRwf-1
Length = 126
Score = 45.6 bits (103), Expect = 0.003
Identities = 21/48 (43%), Positives = 31/48 (64%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 572
+++N+ATE +L L G+ A++I+ +R G F VDDLA V GIG
Sbjct: 65 VHLNSATEGELTQLTGIGSNKAQQIILYRDAFGPFGSVDDLAKVKGIG 112
Score = 42.3 bits (95), Expect = 0.024
Identities = 22/70 (31%), Positives = 40/70 (57%)
Frame = +3
Query: 669 RLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRL 848
+L +S +NS++ +L + G+ A I+ YR+ GPF S+DDL KV+G+ +
Sbjct: 57 QLAEQSVTVHLNSATEGELTQLTGIGSNKAQQIILYRDAFGPFGSVDDLAKVKGIGDKTV 116
Query: 849 STVKQHLSLE 878
+ + +S+E
Sbjct: 117 AKNRARMSIE 126
>UniRef50_A4BM59 Cluster: Unspecific high-affinity DNA-binding
protein; n=1; Nitrococcus mobilis Nb-231|Rep: Unspecific
high-affinity DNA-binding protein - Nitrococcus mobilis
Nb-231
Length = 105
Score = 45.6 bits (103), Expect = 0.003
Identities = 26/69 (37%), Positives = 37/69 (53%)
Frame = +3
Query: 399 LPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGAD 578
L P+ + +NIN A + L L GV A+ IV +R+ GRF+ + DL V GIG
Sbjct: 34 LMPALAFGAKININKAGVQTLQELDGVGPSKAQAIVTYRERNGRFQALTDLTKVRGIGEQ 93
Query: 579 KLELLRPEI 605
L+ R +I
Sbjct: 94 TLDANRDQI 102
Score = 41.1 bits (92), Expect = 0.055
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
+IN + V LQ + G+ A IV YR R G F++L DL KVRG+ L + +++
Sbjct: 45 NINKAGVQTLQELDGVGPSKAQAIVTYRERNGRFQALTDLTKVRGIGEQTLDANRDQIAV 104
Query: 876 E 878
+
Sbjct: 105 Q 105
>UniRef50_Q60AS7 Cluster: Putative competence protein ComE; n=1;
Methylococcus capsulatus|Rep: Putative competence
protein ComE - Methylococcus capsulatus
Length = 116
Score = 45.2 bits (102), Expect = 0.003
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +3
Query: 417 YPELMNINAATEEQLM-TLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELL 593
+ E ++IN+AT E++ T+ GV + A IV+ R+ G FK VDDL V GI L
Sbjct: 18 WAEPLDINSATAEEIAATMTGVGKAKAEAIVKDREAHGNFKSVDDLKRVKGIKEGILAKN 77
Query: 594 RPEICTHTRKQLSRASSCA 650
R +I S A + A
Sbjct: 78 RDKITVKADTAASPAPAAA 96
>UniRef50_Q5H3A8 Cluster: DNA transport competence protein; n=11;
Xanthomonadaceae|Rep: DNA transport competence protein -
Xanthomonas oryzae pv. oryzae
Length = 135
Score = 45.2 bits (102), Expect = 0.003
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +3
Query: 429 MNINAATEEQL-MTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
++IN A+ E+L L V R A IV HRQ G FK ++LALV GIG +E
Sbjct: 52 VDINTASAEELDKVLVNVGRSKAEAIVEHRQANGPFKSAEELALVKGIGLKTVE 105
>UniRef50_Q5FKS5 Cluster: Competence protein; n=4;
Lactobacillus|Rep: Competence protein - Lactobacillus
acidophilus
Length = 227
Score = 45.2 bits (102), Expect = 0.003
Identities = 19/59 (32%), Positives = 35/59 (59%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
+N+N A +L L G+ + A +I+ +R+ G F++++DL VSGIG L+ ++
Sbjct: 167 VNLNTANITELQKLTGIGEKKAEQIIAYREQNGSFQKIEDLMQVSGIGEKTFASLKDQL 225
Score = 42.7 bits (96), Expect = 0.018
Identities = 16/60 (26%), Positives = 40/60 (66%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
++N++++ +LQ + G+ ++ A I+ YR + G F+ ++DL++V G+ +++K L++
Sbjct: 168 NLNTANITELQKLTGIGEKKAEQIIAYREQNGSFQKIEDLMQVSGIGEKTFASLKDQLAI 227
>UniRef50_Q2S2C5 Cluster: Putative uncharacterized protein; n=1;
Salinibacter ruber DSM 13855|Rep: Putative
uncharacterized protein - Salinibacter ruber (strain DSM
13855)
Length = 726
Score = 45.2 bits (102), Expect = 0.003
Identities = 24/68 (35%), Positives = 36/68 (52%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
++N +SV L +P L A IV YR GPF +++DL V G+ + +V+ L L
Sbjct: 103 ALNRASVADLSMLPRLTSRDAHRIVQYRTDNGPFTAVEDLRAVDGIGPAAVQSVRPFLQL 162
Query: 876 ELRKSESV 899
E S S+
Sbjct: 163 EETASRSI 170
Score = 37.1 bits (82), Expect = 0.89
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +3
Query: 435 INAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 599
+N A+ L LP + + A IV++R G F V+DL V GIG ++ +RP
Sbjct: 104 LNRASVADLSMLPRLTSRDAHRIVQYRTDNGPFTAVEDLRAVDGIGPAAVQSVRP 158
>UniRef50_Q4JLN0 Cluster: Lr0776; n=3; Lactobacillus reuteri|Rep:
Lr0776 - Lactobacillus reuteri
Length = 210
Score = 45.2 bits (102), Expect = 0.003
Identities = 20/59 (33%), Positives = 37/59 (62%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
+N+N AT+EQL + G+ + A I+++RQ G+FK +D+L ++G G + L+ +
Sbjct: 150 INLNTATKEQLCQITGIGDKKADLILQYRQEHGQFKSIDELKEINGFGEKTVAKLKDHL 208
Score = 41.1 bits (92), Expect = 0.055
Identities = 19/60 (31%), Positives = 36/60 (60%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
++N+++ QL + G+ + A I+ YR G FKS+D+L ++ G ++ +K HLS+
Sbjct: 151 NLNTATKEQLCQITGIGDKKADLILQYRQEHGQFKSIDELKEINGFGEKTVAKLKDHLSI 210
>UniRef50_A6EFL1 Cluster: Putative uncharacterized protein; n=1;
Pedobacter sp. BAL39|Rep: Putative uncharacterized
protein - Pedobacter sp. BAL39
Length = 306
Score = 45.2 bits (102), Expect = 0.003
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 6/169 (3%)
Frame = +3
Query: 396 SLP-PSEEYPELMNI--NAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSG 566
+LP P + EL N N Q + L G++ + A I+ +R GRF + +DL +
Sbjct: 75 TLPKPEQSVAELFNFDPNVIDLAQWVRL-GLSEKQAMGILNYRNKGGRFYKPEDLGKMYT 133
Query: 567 IGADKLELLRPEICTHTRKQLSRASSCAH---SLDSIRLPSESRLCSINSSSVFQLQCVP 737
I L P + T+ R H ++ P +L +N + +L +
Sbjct: 134 INKKLYLRLLPYVRI-TKDSSFRDRYPEHISKQHQKVKKPEVLKLVELNLADTLELDRLR 192
Query: 738 GLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSLELR 884
G+ A I YR+R G F + L++V G+D + + ++++ R
Sbjct: 193 GIGAVFARRIAGYRDRLGGFYDKEQLLEVFGIDSAKYIQISGQITIDPR 241
>UniRef50_Q8YSV5 Cluster: All2976 protein; n=3; Nostocaceae|Rep:
All2976 protein - Anabaena sp. (strain PCC 7120)
Length = 177
Score = 44.8 bits (101), Expect = 0.004
Identities = 34/128 (26%), Positives = 65/128 (50%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEIC 608
++ N AT + + LPG++ AR +V + +F ++D+A G+ A +LE L+P +
Sbjct: 42 IDTNQATVDDWLRLPGLSIHQARSLVELSRSGVKFYCIEDIAAALGLPAQRLEPLKP-LL 100
Query: 609 THTRKQLSRASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRK 788
T + D + ++L + N++SV QL +P ++ +A +VD R
Sbjct: 101 TFS------------YYDHESIVGFTQLVNPNTASVEQLAQIPYMDMSLAQAVVDNRVSA 148
Query: 789 GPFKSLDD 812
G +++L D
Sbjct: 149 GAYRNLAD 156
>UniRef50_Q8Y8F9 Cluster: Lmo0945 protein; n=13; Listeria|Rep:
Lmo0945 protein - Listeria monocytogenes
Length = 376
Score = 44.8 bits (101), Expect = 0.004
Identities = 24/68 (35%), Positives = 37/68 (54%)
Frame = +3
Query: 369 NKSSLSHTFSLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDD 548
NK + + SEE PE +N+N A+ E L LP + LA +I+ R ++ +DD
Sbjct: 297 NKENSTQKTEDATSEELPESINLNTASSEDLQLLPLIGPALAEKIIAERP----YQSIDD 352
Query: 549 LALVSGIG 572
L ++GIG
Sbjct: 353 LKKINGIG 360
>UniRef50_Q66DS9 Cluster: Possible DNA uptake protein ComEA related
protein precursor; n=12; Yersinia|Rep: Possible DNA
uptake protein ComEA related protein precursor -
Yersinia pseudotuberculosis
Length = 148
Score = 44.8 bits (101), Expect = 0.004
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +3
Query: 369 NKSSLSHTFSLPPSEEYPELMNINAATEEQL-MTLPGVNRQLAREIVRHRQMIGRFKRVD 545
N +++ S+ S+ +NIN+A EQL L G+ R+ A I+ +R+ G F VD
Sbjct: 67 NTKNVAADSSVNASDNQQHQININSANAEQLAQFLNGIGRKKAEAIITYREQSGPFTHVD 126
Query: 546 DLALVSGIGADKLE 587
L V G+G LE
Sbjct: 127 QLLEVPGLGPSFLE 140
Score = 37.1 bits (82), Expect = 0.89
Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +3
Query: 696 SINSSSVFQL-QCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
+INS++ QL Q + G+ ++ A I+ YR + GPF +D L++V G+
Sbjct: 88 NINSANAEQLAQFLNGIGRKKAEAIITYREQSGPFTHVDQLLEVPGL 134
>UniRef50_Q478W5 Cluster: Competence protein ComEA
helix-hairpin-helix region precursor; n=2;
Betaproteobacteria|Rep: Competence protein ComEA
helix-hairpin-helix region precursor - Dechloromonas
aromatica (strain RCB)
Length = 105
Score = 44.8 bits (101), Expect = 0.004
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
+N+N AT ++L + G+ A+ IV +R G FK VDDL V G G + LR E+
Sbjct: 34 VNLNTATVDELDGVKGIGPSKAKAIVDYRTKNGSFKSVDDLKGVKGFGEKSIAKLRSEL 92
Score = 44.4 bits (100), Expect = 0.006
Identities = 21/60 (35%), Positives = 37/60 (61%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
++N+++V +L V G+ A IVDYR + G FKS+DDL V+G ++ ++ L++
Sbjct: 35 NLNTATVDELDGVKGIGPSKAKAIVDYRTKNGSFKSVDDLKGVKGFGEKSIAKLRSELTV 94
>UniRef50_A6ESZ6 Cluster: ComEA protein-related protein; n=1;
unidentified eubacterium SCB49|Rep: ComEA
protein-related protein - unidentified eubacterium SCB49
Length = 293
Score = 44.8 bits (101), Expect = 0.004
Identities = 36/155 (23%), Positives = 75/155 (48%), Gaps = 1/155 (0%)
Frame = +3
Query: 417 YPELMNINAATEEQLMTLPGVNRQLAREIVRHR-QMIGRFKRVDDLALVSGIGADKLELL 593
+ + ++N AT EQL + G+ ++ I+++R + + F LA V G+ D + +
Sbjct: 158 FAQKTDLNVATAEQLQKVSGIGPAISERIIKYRDKTLQGFSNEAQLASVWGV--DSVVIA 215
Query: 594 RPEICTHTRKQLSRASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVD 773
R T K L +++ P ++N++S + + G++ ++A I +
Sbjct: 216 R------TLK-----------LFAVKTPKLIEKMNVNTASASDIATIKGISFDLAKEIWE 258
Query: 774 YRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSLE 878
YR + SLD+L + G+ +L+ +K +LS +
Sbjct: 259 YRVLREQILSLDELATIDGITTSKLNLIKLYLSAD 293
>UniRef50_A4SJ96 Cluster: ComEA protein; n=3; Aeromonas|Rep: ComEA
protein - Aeromonas salmonicida (strain A449)
Length = 106
Score = 44.8 bits (101), Expect = 0.004
Identities = 25/59 (42%), Positives = 34/59 (57%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
+N+N A+ +L L G+ + A+ IV RQ G+F V+ LA VSGIG LE R I
Sbjct: 45 VNLNTASINELTALKGIGEKKAQAIVDFRQKQGKFTTVEQLADVSGIGPATLEANRDMI 103
>UniRef50_A3TJH6 Cluster: Putative DNA-binding protein; n=1;
Janibacter sp. HTCC2649|Rep: Putative DNA-binding
protein - Janibacter sp. HTCC2649
Length = 258
Score = 44.8 bits (101), Expect = 0.004
Identities = 25/59 (42%), Positives = 35/59 (59%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
+++N+A L TLPGV LA+ I+ R GRF V++L VSGIG L L P++
Sbjct: 198 VSLNSADLSALDTLPGVGPVLAQRILDWRTEHGRFTSVEELGEVSGIGEKLLAQLTPKV 256
Score = 36.7 bits (81), Expect = 1.2
Identities = 16/46 (34%), Positives = 29/46 (63%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
S+NS+ + L +PG+ +A I+D+R G F S+++L +V G+
Sbjct: 199 SLNSADLSALDTLPGVGPVLAQRILDWRTEHGRFTSVEELGEVSGI 244
>UniRef50_A1T088 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=1;
Psychromonas ingrahamii 37|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein precursor -
Psychromonas ingrahamii (strain 37)
Length = 104
Score = 44.8 bits (101), Expect = 0.004
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
+IN ++ QL V G+ ++ A I+DYR G F L++L+KVRG+ L ++ +L
Sbjct: 45 NINQATSQQLTIVKGIGEKKAQAIIDYRTMNGDFADLNELVKVRGIGDATLKKIQPFFTL 104
>UniRef50_A6BGR9 Cluster: Putative uncharacterized protein; n=1;
Dorea longicatena DSM 13814|Rep: Putative
uncharacterized protein - Dorea longicatena DSM 13814
Length = 255
Score = 44.4 bits (100), Expect = 0.006
Identities = 20/59 (33%), Positives = 37/59 (62%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
++IN A +++LMTL G+ A I+R+R G+F++++DL V GI + ++ +I
Sbjct: 195 VDINTAGKDELMTLSGIGEAKADAIIRYRDEHGKFQKIEDLMEVEGIKDGVFQKVKDQI 253
Score = 34.7 bits (76), Expect = 4.8
Identities = 16/59 (27%), Positives = 32/59 (54%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
IN++ +L + G+ + A I+ YR+ G F+ ++DL++V G+ VK + +
Sbjct: 197 INTAGKDELMTLSGIGEAKADAIIRYRDEHGKFQKIEDLMEVEGIKDGVFQKVKDQIKI 255
>UniRef50_A4CD31 Cluster: Putative uncharacterized protein; n=1;
Pseudoalteromonas tunicata D2|Rep: Putative
uncharacterized protein - Pseudoalteromonas tunicata D2
Length = 101
Score = 44.4 bits (100), Expect = 0.006
Identities = 23/60 (38%), Positives = 35/60 (58%)
Frame = +3
Query: 405 PSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKL 584
P + +L+NIN A + L +LPG+ + A I+ +R+ G F + DL V GIG DK+
Sbjct: 33 PVKMVSDLININTADLKTLQSLPGLGKTKAAAIIAYREQFGEFASLADLKNVKGIG-DKV 91
Score = 42.3 bits (95), Expect = 0.024
Identities = 22/50 (44%), Positives = 32/50 (64%)
Frame = +3
Query: 684 SRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
S L +IN++ + LQ +PGL + AA I+ YR + G F SL DL V+G+
Sbjct: 38 SDLININTADLKTLQSLPGLGKTKAAAIIAYREQFGEFASLADLKNVKGI 87
>UniRef50_A0Z742 Cluster: Putative uncharacterized protein; n=1;
marine gamma proteobacterium HTCC2080|Rep: Putative
uncharacterized protein - marine gamma proteobacterium
HTCC2080
Length = 114
Score = 44.4 bits (100), Expect = 0.006
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +3
Query: 393 FSLPPSEEYPELMNINAATEEQLM-TLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGI 569
FS PP +NIN A+ E L +L G+ A IV HR+ G F+ +D+L V GI
Sbjct: 40 FSSPPVFSQSSQVNINTASPELLSDSLLGIGLAKAYRIVEHRESYGPFESIDELVEVKGI 99
Query: 570 G 572
G
Sbjct: 100 G 100
Score = 35.9 bits (79), Expect = 2.1
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +3
Query: 678 SESRLCSINSSSVFQLQ-CVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
S+S +IN++S L + G+ A IV++R GPF+S+D+L++V+G+
Sbjct: 47 SQSSQVNINTASPELLSDSLLGIGLAKAYRIVEHRESYGPFESIDELVEVKGI 99
>UniRef50_A7T0R6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 540
Score = 44.4 bits (100), Expect = 0.006
Identities = 18/48 (37%), Positives = 32/48 (66%)
Frame = +3
Query: 426 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGI 569
L+N+N ATEE+L + G +++ IV+HR+ G F V++L ++ G+
Sbjct: 175 LVNVNTATEEELERIKGFGPAVSKNIVKHREEHGPFGNVEELIVIRGV 222
Score = 39.9 bits (89), Expect = 0.13
Identities = 17/62 (27%), Positives = 38/62 (61%)
Frame = +3
Query: 690 LCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHL 869
L ++N+++ +L+ + G ++ NIV +R GPF ++++LI +RG+ L ++ L
Sbjct: 175 LVNVNTATEEELERIKGFGPAVSKNIVKHREEHGPFGNVEELIVIRGVSQKLLCKLEGQL 234
Query: 870 SL 875
++
Sbjct: 235 TV 236
>UniRef50_Q6LIL0 Cluster: Putative uncharacterized protein; n=3;
Vibrionaceae|Rep: Putative uncharacterized protein -
Photobacterium profundum (Photobacterium sp. (strain
SS9))
Length = 166
Score = 44.0 bits (99), Expect = 0.008
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +3
Query: 696 SINSSSVFQLQC-VPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHL 869
++NS+S L +PG+ A IVDYR + G FKS DL KV G+ + +K++L
Sbjct: 106 NVNSASAKDLAASLPGIGDAKAKAIVDYRKKNGKFKSASDLAKVPGLGDKSVGNMKKYL 164
Score = 41.1 bits (92), Expect = 0.055
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = +3
Query: 429 MNINAATEEQLM-TLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 572
+N+N+A+ + L +LPG+ A+ IV +R+ G+FK DLA V G+G
Sbjct: 105 VNVNSASAKDLAASLPGIGDAKAKAIVDYRKKNGKFKSASDLAKVPGLG 153
>UniRef50_Q1ZC98 Cluster: Putative uncharacterized protein; n=1;
Psychromonas sp. CNPT3|Rep: Putative uncharacterized
protein - Psychromonas sp. CNPT3
Length = 723
Score = 44.0 bits (99), Expect = 0.008
Identities = 21/42 (50%), Positives = 27/42 (64%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKV 824
+N +SV L + GLN+ IA NIV YR+ GPF S L+KV
Sbjct: 495 VNRASVQLLTFIAGLNKSIAENIVQYRDTNGPFTSRSSLMKV 536
>UniRef50_Q18Q70 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein; n=2;
Desulfitobacterium hafniense|Rep: Competence protein
ComEA helix-hairpin-helix repeat protein -
Desulfitobacterium hafniense (strain DCB-2)
Length = 208
Score = 44.0 bits (99), Expect = 0.008
Identities = 22/49 (44%), Positives = 30/49 (61%)
Frame = +3
Query: 426 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 572
L+NIN A +L LPG+ LA I+++R G F + +DL VSGIG
Sbjct: 145 LININTADAAELDKLPGIGPALAERIIQYRMEHGLFLQPEDLKKVSGIG 193
Score = 37.9 bits (84), Expect = 0.51
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +3
Query: 684 SRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
S L +IN++ +L +PG+ +A I+ YR G F +DL KV G+
Sbjct: 143 SNLININTADAAELDKLPGIGPALAERIIQYRMEHGLFLQPEDLKKVSGI 192
>UniRef50_A6PJD0 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=1;
Shewanella sediminis HAW-EB3|Rep: Competence protein
ComEA helix-hairpin-helix repeat protein precursor -
Shewanella sediminis HAW-EB3
Length = 105
Score = 44.0 bits (99), Expect = 0.008
Identities = 19/46 (41%), Positives = 32/46 (69%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
+IN++SV +L + G+ + A I+DYR G F S++DL+KV+G+
Sbjct: 46 NINTASVQELVLLNGIGESKAQAIIDYRTSHGQFDSINDLVKVKGI 91
Score = 43.6 bits (98), Expect = 0.010
Identities = 21/62 (33%), Positives = 35/62 (56%)
Frame = +3
Query: 402 PPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADK 581
P S+ +NIN A+ ++L+ L G+ A+ I+ +R G+F ++DL V GIG
Sbjct: 36 PQSQHQSINININTASVQELVLLNGIGESKAQAIIDYRTSHGQFDSINDLVKVKGIGTKL 95
Query: 582 LE 587
+E
Sbjct: 96 VE 97
>UniRef50_A5KJM8 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 225
Score = 44.0 bits (99), Expect = 0.008
Identities = 20/59 (33%), Positives = 35/59 (59%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
+NIN A +E+LMTL GV A+ I+ +R+ G F+ +++L + GI ++ +I
Sbjct: 165 ININTAEKEELMTLTGVGEAKAQSIIAYREEHGGFQSIEELMQIEGIKEGVFNKIKEDI 223
>UniRef50_Q8EPV5 Cluster: Late competence protein; n=1;
Oceanobacillus iheyensis|Rep: Late competence protein -
Oceanobacillus iheyensis
Length = 198
Score = 43.6 bits (98), Expect = 0.010
Identities = 21/59 (35%), Positives = 35/59 (59%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
+ IN A+ +++ LPG+ A I ++R+ G F+ ++DL +SGIG +E LR I
Sbjct: 137 IRINYASVQEIEQLPGIGPSKAETIFQYREENGLFRELEDLLNISGIGEKTIESLRDYI 195
Score = 40.3 bits (90), Expect = 0.096
Identities = 16/59 (27%), Positives = 34/59 (57%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
IN +SV +++ +PG+ A I YR G F+ L+DL+ + G+ + +++ ++ +
Sbjct: 139 INYASVQEIEQLPGIGPSKAETIFQYREENGLFRELEDLLNISGIGEKTIESLRDYIQI 197
>UniRef50_Q1PXY4 Cluster: Putative uncharacterized protein; n=1;
Candidatus Kuenenia stuttgartiensis|Rep: Putative
uncharacterized protein - Candidatus Kuenenia
stuttgartiensis
Length = 196
Score = 43.6 bits (98), Expect = 0.010
Identities = 21/62 (33%), Positives = 37/62 (59%)
Frame = +3
Query: 411 EEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLEL 590
E+ ++IN + +L+ LP V A+ IV +R+ GRF+ +D+L+ + GIG + L
Sbjct: 118 EDIKTKIDINESPWYELLLLPKVGEAKAKAIVAYREKYGRFESLDELSRIDGIGKKIIAL 177
Query: 591 LR 596
L+
Sbjct: 178 LK 179
Score = 35.9 bits (79), Expect = 2.1
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
IN S ++L +P + + A IV YR + G F+SLD+L ++ G+
Sbjct: 126 INESPWYELLLLPKVGEAKAKAIVAYREKYGRFESLDELSRIDGI 170
>UniRef50_Q1NXG4 Cluster: Phospholipase D/Transphosphatidylase
precursor; n=2; delta proteobacterium MLMS-1|Rep:
Phospholipase D/Transphosphatidylase precursor - delta
proteobacterium MLMS-1
Length = 288
Score = 43.6 bits (98), Expect = 0.010
Identities = 23/60 (38%), Positives = 32/60 (53%)
Frame = +3
Query: 420 PELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 599
P ++IN AT +L LP V AR IV +RQ G F +++L +G LE +RP
Sbjct: 35 PGSVDINRATVAELQELPFVGEVRARAIVEYRQQEGPFTELEELLASQAVGHRTLEAIRP 94
Score = 38.3 bits (85), Expect = 0.39
Identities = 18/57 (31%), Positives = 35/57 (61%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHL 869
IN ++V +LQ +P + + A IV+YR ++GPF L++L+ + + L ++ +L
Sbjct: 40 INRATVAELQELPFVGEVRARAIVEYRQQEGPFTELEELLASQAVGHRTLEAIRPYL 96
>UniRef50_Q0AED6 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=1;
Nitrosomonas eutropha C91|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein precursor -
Nitrosomonas eutropha (strain C71)
Length = 94
Score = 43.6 bits (98), Expect = 0.010
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSLE 878
IN++S L+ V GL A I++YR + G FKS+ DL V+G+ + L + +S++
Sbjct: 24 INTASQIDLESVKGLGPAKAKAIIEYREKHGMFKSVGDLTNVKGIGVGTLRQLGDQVSVQ 83
>UniRef50_Q03QM7 Cluster: DNA uptake protein related DNA-binding
protein; n=1; Lactobacillus brevis ATCC 367|Rep: DNA
uptake protein related DNA-binding protein -
Lactobacillus brevis (strain ATCC 367 / JCM 1170)
Length = 231
Score = 43.6 bits (98), Expect = 0.010
Identities = 22/62 (35%), Positives = 36/62 (58%)
Frame = +3
Query: 426 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
++N+N AT +L L G+ + A++IV +R G F+ V DLA V G G + L+ ++
Sbjct: 170 VVNLNTATVTELQQLTGIGEKKAQKIVDYRTDHGHFQSVKDLAQVPGFGEKTVANLQDQL 229
Query: 606 CT 611
T
Sbjct: 230 TT 231
Score = 40.7 bits (91), Expect = 0.073
Identities = 19/59 (32%), Positives = 37/59 (62%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLS 872
++N+++V +LQ + G+ ++ A IVDYR G F+S+ DL +V G ++ ++ L+
Sbjct: 172 NLNTATVTELQQLTGIGEKKAQKIVDYRTDHGHFQSVKDLAQVPGFGEKTVANLQDQLT 230
>UniRef50_A0X4V8 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=1;
Shewanella pealeana ATCC 700345|Rep: Competence protein
ComEA helix-hairpin-helix repeat protein precursor -
Shewanella pealeana ATCC 700345
Length = 105
Score = 43.6 bits (98), Expect = 0.010
Identities = 22/61 (36%), Positives = 35/61 (57%)
Frame = +3
Query: 423 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 602
EL+ IN+AT +L +L G+ A IV +R+ G F V++L V GIG ++ R +
Sbjct: 43 ELVKINSATAAELSSLNGIGEAKATAIVEYRKAHGNFSSVEELTNVKGIGEKLVDKNRSQ 102
Query: 603 I 605
+
Sbjct: 103 L 103
Score = 41.5 bits (93), Expect = 0.042
Identities = 21/66 (31%), Positives = 37/66 (56%)
Frame = +3
Query: 678 SESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTV 857
++S L INS++ +L + G+ + A IV+YR G F S+++L V+G+ +
Sbjct: 40 AKSELVKINSATAAELSSLNGIGEAKATAIVEYRKAHGNFSSVEELTNVKGIGEKLVDKN 99
Query: 858 KQHLSL 875
+ LSL
Sbjct: 100 RSQLSL 105
>UniRef50_A5EX63 Cluster: Competence protein ComEA-related protein;
n=2; Dichelobacter nodosus|Rep: Competence protein
ComEA-related protein - Dichelobacter nodosus (strain
VCS1703A)
Length = 94
Score = 43.2 bits (97), Expect = 0.014
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
++N+++V +L + G+ A IVDYR G F SL+ L V+G+ L+ + HL+L
Sbjct: 23 NLNTATVEELVLLKGIGTVKAQAIVDYRKEHGDFTSLEQLSSVKGIGKALLAKITPHLTL 82
Query: 876 E 878
+
Sbjct: 83 D 83
>UniRef50_Q9RXU9 Cluster: Putative uncharacterized protein; n=1;
Deinococcus radiodurans|Rep: Putative uncharacterized
protein - Deinococcus radiodurans
Length = 123
Score = 42.7 bits (96), Expect = 0.018
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLA-LVSGIGADKLELLRP 599
+N+N AT QLMTLPGV+ ++A EI++ R +K +L V GIG + ++ + P
Sbjct: 66 VNVNTATAAQLMTLPGVSNKIAAEIIKDRP----YKNAAELVKKVKGIGKNNVKPMTP 119
>UniRef50_Q65RQ5 Cluster: ComEA protein; n=2; Pasteurellaceae|Rep:
ComEA protein - Mannheimia succiniciproducens (strain
MBEL55E)
Length = 161
Score = 42.7 bits (96), Expect = 0.018
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +3
Query: 405 PSEEYPELMNINAATEEQL-MTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADK 581
P++ +NIN AT E++ TL G+ + A I+++R+ G F V+ L + GIG
Sbjct: 92 PADNIGNTVNINTATAEEIKQTLIGIGAKKAEAIIQYREKHGNFTNVEQLLEIQGIGEAT 151
Query: 582 LE 587
L+
Sbjct: 152 LD 153
>UniRef50_A6FES4 Cluster: ComEA; n=1; Moritella sp. PE36|Rep: ComEA
- Moritella sp. PE36
Length = 129
Score = 42.7 bits (96), Expect = 0.018
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
+NIN AT+ +L LPG+ A +I++ R+ G F DL V GIG + L I
Sbjct: 66 LNINTATQLELTALPGIGTYKAAQIIQWREHNGEFVTTTDLVNVKGIGKGTITKLAGRI 124
Score = 38.7 bits (86), Expect = 0.29
Identities = 20/65 (30%), Positives = 36/65 (55%)
Frame = +3
Query: 639 SSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLI 818
S A S D++ +P +IN+++ +L +PG+ AA I+ +R G F + DL+
Sbjct: 53 SHSATSADALLMP-----LNINTATQLELTALPGIGTYKAAQIIQWREHNGEFVTTTDLV 107
Query: 819 KVRGM 833
V+G+
Sbjct: 108 NVKGI 112
>UniRef50_A3Y3S0 Cluster: DNA uptake protein; n=10; Vibrionales|Rep:
DNA uptake protein - Vibrio sp. MED222
Length = 99
Score = 42.7 bits (96), Expect = 0.018
Identities = 24/49 (48%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 429 MNINAATEEQLMTL-PGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 572
+NIN AT E+L L GV + A+EIV +R G F DDL V GIG
Sbjct: 38 VNINTATAEELSALLVGVGDKKAQEIVDYRDQNGAFTTADDLVSVKGIG 86
Score = 38.7 bits (86), Expect = 0.29
Identities = 18/61 (29%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +3
Query: 696 SINSSSVFQLQCV-PGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLS 872
+IN+++ +L + G+ + A IVDYR++ G F + DDL+ V+G+ ++ ++ +
Sbjct: 39 NINTATAEELSALLVGVGDKKAQEIVDYRDQNGAFTTADDLVSVKGIGEATVNKNRERIQ 98
Query: 873 L 875
L
Sbjct: 99 L 99
>UniRef50_A0J9L7 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=1;
Shewanella woodyi ATCC 51908|Rep: Competence protein
ComEA helix-hairpin-helix repeat protein precursor -
Shewanella woodyi ATCC 51908
Length = 107
Score = 42.7 bits (96), Expect = 0.018
Identities = 22/53 (41%), Positives = 29/53 (54%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
+NIN A L+ L G+ A+ I+ RQ G FK V +L V GIGA +E
Sbjct: 47 ININTAQVADLVRLKGIGEAKAKAIIEFRQANGNFKAVKELEQVKGIGAKLVE 99
>UniRef50_Q4JWS7 Cluster: Putative uncharacterized protein; n=1;
Corynebacterium jeikeium K411|Rep: Putative
uncharacterized protein - Corynebacterium jeikeium
(strain K411)
Length = 294
Score = 42.3 bits (95), Expect = 0.024
Identities = 16/60 (26%), Positives = 35/60 (58%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
++N++ QL+ + G+ A I+D+R GPF S++ L+ VRG+ + ++ +++
Sbjct: 235 NLNTADATQLETISGIGPATAEAIIDWRESNGPFTSVEQLLDVRGIGPAKFEAMRDAVTI 294
>UniRef50_Q30UB5 Cluster: Competence protein ComEA
helix-hairpin-helix region; n=1; Thiomicrospira
denitrificans ATCC 33889|Rep: Competence protein ComEA
helix-hairpin-helix region - Thiomicrospira
denitrificans (strain ATCC 33889 / DSM 1351)
Length = 657
Score = 42.3 bits (95), Expect = 0.024
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
INS+S+ L V G+ ++A NI+ YR G FK+ + L+ V+G+
Sbjct: 446 INSASLSLLSYVAGVGTKVAQNIITYREENGAFKTKEQLLSVKGL 490
>UniRef50_A5FP79 Cluster: DNA uptake protein and related DNA-binding
protein-like protein precursor; n=3;
Dehalococcoides|Rep: DNA uptake protein and related
DNA-binding protein-like protein precursor -
Dehalococcoides sp. BAV1
Length = 166
Score = 42.3 bits (95), Expect = 0.024
Identities = 22/81 (27%), Positives = 38/81 (46%)
Frame = +3
Query: 390 TFSLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGI 569
+F+ PP + +++N A L+ LPG+ A +IV +R G FK +L L+ G
Sbjct: 86 SFNPPPLASSAQKIDLNRAEIWLLVALPGIGEARASDIVSYRNQNGGFKNTLELMLIPGF 145
Query: 570 GADKLELLRPEICTHTRKQLS 632
+ ++ IC +S
Sbjct: 146 SQSLYDQIKDMICVSETADIS 166
Score = 39.5 bits (88), Expect = 0.17
Identities = 17/53 (32%), Positives = 33/53 (62%)
Frame = +3
Query: 672 LPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRG 830
L S ++ +N + ++ L +PG+ + A++IV YRN+ G FK+ +L+ + G
Sbjct: 92 LASSAQKIDLNRAEIWLLVALPGIGEARASDIVSYRNQNGGFKNTLELMLIPG 144
>UniRef50_Q9N4L5 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 745
Score = 42.3 bits (95), Expect = 0.024
Identities = 19/49 (38%), Positives = 33/49 (67%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGA 575
+++N A++ L + G+N + A+EIV++R+ GRF+ +L V GIGA
Sbjct: 513 VDLNTASKNLLQRINGLNEKTAKEIVQYREQNGRFRSRAELKEVKGIGA 561
Score = 38.3 bits (85), Expect = 0.39
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
+N++S LQ + GLN++ A IV YR + G F+S +L +V+G+
Sbjct: 515 LNTASKNLLQRINGLNEKTAKEIVQYREQNGRFRSRAELKEVKGI 559
>UniRef50_Q59DV5 Cluster: CG31156-PB, isoform B; n=3;
Sophophora|Rep: CG31156-PB, isoform B - Drosophila
melanogaster (Fruit fly)
Length = 993
Score = 42.3 bits (95), Expect = 0.024
Identities = 17/45 (37%), Positives = 33/45 (73%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
+N++S+ L+ + GL+++ A I+++R +KGPFK+ DL+ VR +
Sbjct: 701 LNTASLSVLKHIAGLSEKKAEKIIEHRTQKGPFKTRKDLLSVRSI 745
>UniRef50_Q82VW4 Cluster: Putative DNA transport competence protein,
ComEA; n=1; Nitrosomonas europaea|Rep: Putative DNA
transport competence protein, ComEA - Nitrosomonas
europaea
Length = 120
Score = 41.9 bits (94), Expect = 0.031
Identities = 21/60 (35%), Positives = 36/60 (60%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSLE 878
IN++S L+ V GL A I++YRN+ G FKS+++L V+G+ L + +S++
Sbjct: 50 INTASQADLESVKGLGPVKAKAIIEYRNKYGMFKSVEELANVKGIGAGILKQLGDQVSVQ 109
>UniRef50_Q2JI81 Cluster: Phospholipase D/competence protein ComEA
helix-hairpin-helix domain protein; n=2;
Synechococcus|Rep: Phospholipase D/competence protein
ComEA helix-hairpin-helix domain protein - Synechococcus
sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria
bacteriumYellowstone B-Prime)
Length = 591
Score = 41.9 bits (94), Expect = 0.031
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
+N+N AT +L LPG+ LA+ I+ R F ++DL V+GIG ++E LR +
Sbjct: 535 VNLNTATAAELEQLPGIGPALAQRIIEARP----FSSLEDLQRVNGIGPARIEQLRDRV 589
Score = 37.5 bits (83), Expect = 0.68
Identities = 18/66 (27%), Positives = 38/66 (57%)
Frame = +3
Query: 675 PSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLST 854
P S ++N+++ +L+ +PG+ +A I++ R PF SL+DL +V G+ R+
Sbjct: 529 PGGSPRVNLNTATAAELEQLPGIGPALAQRIIEAR----PFSSLEDLQRVNGIGPARIEQ 584
Query: 855 VKQHLS 872
++ ++
Sbjct: 585 LRDRVT 590
>UniRef50_Q1N619 Cluster: DNA uptake protein and related DNA-binding
protein; n=1; Oceanobacter sp. RED65|Rep: DNA uptake
protein and related DNA-binding protein - Oceanobacter
sp. RED65
Length = 104
Score = 41.9 bits (94), Expect = 0.031
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +3
Query: 651 HSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRG 830
H S + + IN++S QL + + A I+DYR GPFK L+DL V+G
Sbjct: 28 HQQGSEQAAQQIETIDINTASAEQLTQLDNIGPNKAQAIIDYRESNGPFKDLEDLQNVKG 87
Query: 831 M 833
+
Sbjct: 88 I 88
Score = 40.7 bits (91), Expect = 0.073
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = +3
Query: 423 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGA 575
E ++IN A+ EQL L + A+ I+ +R+ G FK ++DL V GIG+
Sbjct: 40 ETIDINTASAEQLTQLDNIGPNKAQAIIDYRESNGPFKDLEDLQNVKGIGS 90
>UniRef50_A6FX28 Cluster: Putative uncharacterized protein; n=1;
Plesiocystis pacifica SIR-1|Rep: Putative
uncharacterized protein - Plesiocystis pacifica SIR-1
Length = 482
Score = 41.9 bits (94), Expect = 0.031
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = +3
Query: 423 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 596
+++++NAA +L LPGV +A I+ RQ F VD LA V GI A +E LR
Sbjct: 354 KVLDLNAACHSELSALPGVGWVIANRILSRRQE-SPFLSVDGLAEVEGISAQTVEALR 410
>UniRef50_A3QFV7 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=1;
Shewanella loihica PV-4|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein precursor -
Shewanella loihica (strain BAA-1088 / PV-4)
Length = 99
Score = 41.9 bits (94), Expect = 0.031
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
+NIN A+ ++L L G+ A IV +R G+F +++L V GIG +E
Sbjct: 39 VNINTASAQELTQLKGIGEAKASAIVEYRDAHGKFNSIEELTQVKGIGPKVIE 91
Score = 37.9 bits (84), Expect = 0.51
Identities = 16/46 (34%), Positives = 32/46 (69%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
+IN++S +L + G+ + A+ IV+YR+ G F S+++L +V+G+
Sbjct: 40 NINTASAQELTQLKGIGEAKASAIVEYRDAHGKFNSIEELTQVKGI 85
>UniRef50_UPI0000D55B34 Cluster: PREDICTED: similar to CG14450-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG14450-PA - Tribolium castaneum
Length = 353
Score = 41.5 bits (93), Expect = 0.042
Identities = 22/63 (34%), Positives = 37/63 (58%)
Frame = +3
Query: 681 ESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVK 860
E L +N S+ QLQC+ + Q + +Y+ R GPFKSL++L++V G+ + L +
Sbjct: 45 EKILNILNESNKDQLQCL-NVAQTNIKRLENYKKRNGPFKSLNELLEVDGLSVKMLEKMC 103
Query: 861 QHL 869
+ L
Sbjct: 104 KQL 106
>UniRef50_Q6AL09 Cluster: Putative uncharacterized protein; n=1;
Desulfotalea psychrophila|Rep: Putative uncharacterized
protein - Desulfotalea psychrophila
Length = 110
Score = 41.5 bits (93), Expect = 0.042
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
+N+N A + +L+ +PG+ + A I+++R G+F + L V GIG+ L+
Sbjct: 50 VNVNTANKTELIRVPGIGNKTADSILKYRNDHGKFTTITQLTEVKGIGSKSLK 102
Score = 41.5 bits (93), Expect = 0.042
Identities = 19/60 (31%), Positives = 38/60 (63%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
++N+++ +L VPG+ + A +I+ YRN G F ++ L +V+G+ L ++++LSL
Sbjct: 51 NVNTANKTELIRVPGIGNKTADSILKYRNDHGKFTTITQLTEVKGIGSKSLKKMEKYLSL 110
>UniRef50_Q4A5L5 Cluster: Putative uncharacterized protein; n=2;
Mycoplasma synoviae 53|Rep: Putative uncharacterized
protein - Mycoplasma synoviae (strain 53)
Length = 705
Score = 41.5 bits (93), Expect = 0.042
Identities = 18/45 (40%), Positives = 32/45 (71%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
+NS+S L + GL+++ + NI++YRN+ FKS D+++KV G+
Sbjct: 487 LNSASREILSYISGLDKKTSQNIINYRNKNKSFKSRDEVLKVDGI 531
>UniRef50_Q2SJI1 Cluster: DNA uptake protein and related DNA-binding
protein; n=1; Hahella chejuensis KCTC 2396|Rep: DNA
uptake protein and related DNA-binding protein - Hahella
chejuensis (strain KCTC 2396)
Length = 101
Score = 41.5 bits (93), Expect = 0.042
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 408 SEEYPELMNINAATEEQLM-TLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKL 584
S E ++NIN A E L L GV + A I+ R G FK + +LALV GIG +
Sbjct: 32 SAEQQNVVNINTADAEALAKALNGVGLKKAEAIIEFRTTNGPFKDISELALVKGIGEKTV 91
Query: 585 E 587
E
Sbjct: 92 E 92
>UniRef50_Q03VU1 Cluster: DNA uptake protein related DNA-binding
protein; n=1; Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293|Rep: DNA uptake protein related
DNA-binding protein - Leuconostoc mesenteroides subsp.
mesenteroides (strain ATCC 8293 /NCDO 523)
Length = 211
Score = 41.5 bits (93), Expect = 0.042
Identities = 16/66 (24%), Positives = 41/66 (62%)
Frame = +3
Query: 678 SESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTV 857
+++ + ++N+++V +LQ + G+ + A I+ YR G FKS++++ ++ G+ R +
Sbjct: 146 TDNEVINLNTATVVELQTLDGIGVKKAEQIIAYREEHGGFKSIEEIKQISGIGEKRFEAL 205
Query: 858 KQHLSL 875
K +++
Sbjct: 206 KDKVTV 211
>UniRef50_Q17DE1 Cluster: S1 RNA binding domain protein, putative;
n=1; Aedes aegypti|Rep: S1 RNA binding domain protein,
putative - Aedes aegypti (Yellowfever mosquito)
Length = 968
Score = 41.5 bits (93), Expect = 0.042
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = +3
Query: 642 SCAHSLDSIRLPSESRL-CSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLI 818
S + +LD + + S + IN++SV L V GL + A +IV +R + GPF+S + L+
Sbjct: 715 SLSETLDEVVMECVSFVGVDINTASVSLLSHVSGLTAKRAEHIVSHRTKNGPFRSREQLL 774
Query: 819 KVR 827
KV+
Sbjct: 775 KVK 777
>UniRef50_UPI0000E0E604 Cluster: hypothetical protein OM2255_19632;
n=1; alpha proteobacterium HTCC2255|Rep: hypothetical
protein OM2255_19632 - alpha proteobacterium HTCC2255
Length = 121
Score = 41.1 bits (92), Expect = 0.055
Identities = 18/64 (28%), Positives = 39/64 (60%)
Frame = +3
Query: 432 NINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEICT 611
++N A+ ++L ++ G+ + A+ IV +R++ G F+ V+ + V G+G L+ L P I
Sbjct: 56 DLNLASTKELASIKGIGIKKAQAIVAYRELHGEFESVEQVTKVKGLGNKLLQKLTPYIIV 115
Query: 612 HTRK 623
+ ++
Sbjct: 116 NPKQ 119
>UniRef50_Q039L8 Cluster: DNA uptake protein related DNA-binding
protein; n=1; Lactobacillus casei ATCC 334|Rep: DNA
uptake protein related DNA-binding protein -
Lactobacillus casei (strain ATCC 334)
Length = 223
Score = 41.1 bits (92), Expect = 0.055
Identities = 19/60 (31%), Positives = 36/60 (60%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
++N++ V QLQ + G+ + AA+I+ YR+ G FK + +L +V G+ T+ L++
Sbjct: 162 NLNTADVSQLQTISGIGPKKAADIISYRDSHGGFKDVAELKEVHGIGDKTFETLAPQLTV 221
>UniRef50_Q01NQ1 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=1;
Solibacter usitatus Ellin6076|Rep: Competence protein
ComEA helix-hairpin-helix repeat protein precursor -
Solibacter usitatus (strain Ellin6076)
Length = 153
Score = 41.1 bits (92), Expect = 0.055
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHL 869
++N + +L+ L + AA I+ YR + G F S++DL KV G+D ++ K L
Sbjct: 93 NVNEARAVELESGLSLPRSQAAAIIQYRTKNGDFHSIEDLKKVPGVDAAKIEAKKDRL 150
Score = 37.9 bits (84), Expect = 0.51
Identities = 20/61 (32%), Positives = 35/61 (57%)
Frame = +3
Query: 405 PSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKL 584
P++E P++ N+N A +L + + R A I+++R G F ++DL V G+ A K+
Sbjct: 85 PADEIPKI-NVNEARAVELESGLSLPRSQAAAIIQYRTKNGDFHSIEDLKKVPGVDAAKI 143
Query: 585 E 587
E
Sbjct: 144 E 144
>UniRef50_A1U508 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=3;
Marinobacter|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein precursor -
Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 /
VT8)(Marinobacter hydrocarbonoclasticus (strain DSM
11845))
Length = 91
Score = 41.1 bits (92), Expect = 0.055
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +3
Query: 663 SIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
S SE +IN++ V L + G+ + A I+DYR GPF S++ L V+G+
Sbjct: 20 SAAFASEQPTVNINTADVATLASLSGVGESKAQAIIDYREANGPFASIEALADVKGI 76
>UniRef50_Q7VNA6 Cluster: Putative uncharacterized protein; n=1;
Haemophilus ducreyi|Rep: Putative uncharacterized
protein - Haemophilus ducreyi
Length = 119
Score = 40.7 bits (91), Expect = 0.073
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +3
Query: 423 ELMNINAATEEQLMT-LPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
+L+NIN A+ ++ L G+ + A+ IV +R G F +D + VSGIG LE
Sbjct: 55 QLVNINTASAAEIQEKLTGIGEKKAQAIVDYRTKNGNFTHIDQITAVSGIGKATLE 110
Score = 38.3 bits (85), Expect = 0.39
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +3
Query: 660 DSIRLPSESRLCSINSSSVFQLQ-CVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMD 836
+S + +++L +IN++S ++Q + G+ ++ A IVDYR + G F +D + V G+
Sbjct: 46 NSTTMAHKAQLVNINTASAAEIQEKLTGIGEKKAQAIVDYRTKNGNFTHIDQITAVSGIG 105
Query: 837 IVRLSTVKQHLSLE 878
L + LE
Sbjct: 106 KATLEKNHDRIILE 119
>UniRef50_Q6ALW5 Cluster: Similar to DNA transport competence
protein; n=1; Desulfotalea psychrophila|Rep: Similar to
DNA transport competence protein - Desulfotalea
psychrophila
Length = 149
Score = 40.7 bits (91), Expect = 0.073
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +3
Query: 435 INAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
+N AT E L T+PG+ L + IV R G + + L VSGIGA + +
Sbjct: 88 VNMATTELLQTIPGIGPALGQRIVEERGRNGVYDSPESLRRVSGIGASRAQ 138
>UniRef50_Q47FY2 Cluster: Putative uncharacterized protein; n=1;
Dechloromonas aromatica RCB|Rep: Putative
uncharacterized protein - Dechloromonas aromatica
(strain RCB)
Length = 370
Score = 40.7 bits (91), Expect = 0.073
Identities = 22/60 (36%), Positives = 37/60 (61%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
SIN +S +L + GL +E+A I+ R P+ SLDD+ K +GM + +L+ ++ L+L
Sbjct: 315 SINKASEDELAAIKGLPREVARAIIAAR----PYASLDDVCKAKGMGLKKLAKLRDLLAL 370
Score = 36.7 bits (81), Expect = 1.2
Identities = 20/65 (30%), Positives = 36/65 (55%)
Frame = +3
Query: 402 PPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADK 581
P + + ++IN A+E++L + G+ R++AR I+ R + +DD+ G+G K
Sbjct: 305 PAKKAAAKPVSINKASEDELAAIKGLPREVARAIIAARP----YASLDDVCKAKGMGLKK 360
Query: 582 LELLR 596
L LR
Sbjct: 361 LAKLR 365
>UniRef50_Q2SPG5 Cluster: Protein containing HHH motif; n=1; Hahella
chejuensis KCTC 2396|Rep: Protein containing HHH motif -
Hahella chejuensis (strain KCTC 2396)
Length = 129
Score = 40.7 bits (91), Expect = 0.073
Identities = 23/52 (44%), Positives = 31/52 (59%)
Frame = +3
Query: 423 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGAD 578
EL+NIN AT +QL +LP + R A++I R F + +DL LV GI D
Sbjct: 71 ELVNINHATVKQLTSLPKIGRATAQKIAEARP----FSKPEDLKLVQGINED 118
>UniRef50_Q44NK3 Cluster: Helix-hairpin-helix motif; n=5;
Chlorobium/Pelodictyon group|Rep: Helix-hairpin-helix
motif - Chlorobium limicola DSM 245
Length = 183
Score = 40.7 bits (91), Expect = 0.073
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +3
Query: 438 NAATEEQLMTLPGVNRQLAREIVRHRQMIG-RFKRVDDLALVSGIGADKLELLRPEI 605
N A+E+QL + GV +A+ +V R G R +R ++L V GIG KLE+L+ +
Sbjct: 124 NKASEKQLQQISGVGPVMAKRLVTFRASKGGRIERHEELLEVKGIGKKKLEILKKHL 180
Score = 38.3 bits (85), Expect = 0.39
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGP-FKSLDDLIKVRGMDIVRLSTVKQHLS 872
+ N +S QLQ + G+ +A +V +R KG + ++L++V+G+ +L +K+HL+
Sbjct: 122 AFNKASEKQLQQISGVGPVMAKRLVTFRASKGGRIERHEELLEVKGIGKKKLEILKKHLT 181
Query: 873 LE 878
LE
Sbjct: 182 LE 183
>UniRef50_Q0A9Z1 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=1;
Alkalilimnicola ehrlichei MLHE-1|Rep: Competence protein
ComEA helix-hairpin-helix repeat protein precursor -
Alkalilimnicola ehrlichei (strain MLHE-1)
Length = 90
Score = 40.7 bits (91), Expect = 0.073
Identities = 27/60 (45%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 429 MNINAATEEQLMT-LPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
++IN A L L GV A+ IV HR+ G F VDDL VSGIG LE R I
Sbjct: 28 IDINTADAGLLAEELVGVGESRAQAIVEHREANGPFGSVDDLTQVSGIGETTLEENRERI 87
Score = 35.1 bits (77), Expect = 3.6
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 738 GLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSLE 878
G+ + A IV++R GPF S+DDL +V G+ L ++ + +E
Sbjct: 44 GVGESRAQAIVEHREANGPFGSVDDLTQVSGIGETTLEENRERIRVE 90
>UniRef50_A4AGG3 Cluster: Competence protein ComEA
helix-hairpin-helix region; n=1; marine actinobacterium
PHSC20C1|Rep: Competence protein ComEA
helix-hairpin-helix region - marine actinobacterium
PHSC20C1
Length = 196
Score = 40.7 bits (91), Expect = 0.073
Identities = 22/56 (39%), Positives = 31/56 (55%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 596
+N+N A L TLP + +A+ I+ R+ G F +DDL V+GIG E LR
Sbjct: 136 VNLNTADAAALDTLPRIGPAMAKRILAWRESNGPFVTIDDLRNVAGIGDATFEGLR 191
Score = 35.5 bits (78), Expect = 2.7
Identities = 17/52 (32%), Positives = 31/52 (59%)
Frame = +3
Query: 678 SESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
S+SR+ ++N++ L +P + +A I+ +R GPF ++DDL V G+
Sbjct: 132 SDSRV-NLNTADAAALDTLPRIGPAMAKRILAWRESNGPFVTIDDLRNVAGI 182
>UniRef50_A3YGE0 Cluster: Putative uncharacterized protein; n=1;
Marinomonas sp. MED121|Rep: Putative uncharacterized
protein - Marinomonas sp. MED121
Length = 121
Score = 40.7 bits (91), Expect = 0.073
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +3
Query: 429 MNINAATEEQLMT-LPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
+++N AT EQL + GV ++ A+ I+ +R+ G F +D+L V GIG L+
Sbjct: 44 LDVNLATAEQLAAVMVGVGQKKAQAIIEYRETNGAFNALDELIFVKGIGPSLLK 97
Score = 37.1 bits (82), Expect = 0.89
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +3
Query: 699 INSSSVFQLQCVP-GLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
+N ++ QL V G+ Q+ A I++YR G F +LD+LI V+G+ L + +LS+
Sbjct: 46 VNLATAEQLAAVMVGVGQKKAQAIIEYRETNGAFNALDELIFVKGIGPSLLKKNRVYLSI 105
>UniRef50_A1WUI2 Cluster: Transcriptional regulator, Fis family
precursor; n=1; Halorhodospira halophila SL1|Rep:
Transcriptional regulator, Fis family precursor -
Halorhodospira halophila (strain DSM 244 / SL1)
(Ectothiorhodospirahalophila (strain DSM 244 / SL1))
Length = 99
Score = 40.7 bits (91), Expect = 0.073
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +3
Query: 429 MNINAATEEQLMT-LPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
++INAA+ ++L + L GV A I+ R+ G F+ +DL+ VSG+G LE R +I
Sbjct: 34 VDINAASADELASVLNGVGEARAEAIIEEREANGPFQDAEDLSRVSGVGPATLEENREQI 93
>UniRef50_A1R6X3 Cluster: Putative comEA protein; n=1; Arthrobacter
aurescens TC1|Rep: Putative comEA protein - Arthrobacter
aurescens (strain TC1)
Length = 276
Score = 40.7 bits (91), Expect = 0.073
Identities = 23/56 (41%), Positives = 33/56 (58%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 596
+NIN A+ E+L TLP V A+ I+ R+ G F V++L V GIG +E L+
Sbjct: 213 VNINTASLEELGTLPRVGPVTAQGIIDWRKEHGPFASVEELDAVDGIGPKLMESLK 268
Score = 37.9 bits (84), Expect = 0.51
Identities = 17/61 (27%), Positives = 38/61 (62%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
+IN++S+ +L +P + A I+D+R GPF S+++L V G+ + ++K+ +++
Sbjct: 214 NINTASLEELGTLPRVGPVTAQGIIDWRKEHGPFASVEELDAVDGIGPKLMESLKELVTV 273
Query: 876 E 878
+
Sbjct: 274 Q 274
>UniRef50_Q8KB66 Cluster: ComEA-related protein; n=1; Chlorobaculum
tepidum|Rep: ComEA-related protein - Chlorobium tepidum
Length = 171
Score = 40.3 bits (90), Expect = 0.096
Identities = 17/58 (29%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +3
Query: 705 SSSVFQLQCVPGLNQEIAANIVDYRNRK-GPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
++S QLQ +PG+ +A ++++R + G + +D +KV+G+ +L +++HL+L
Sbjct: 113 TASASQLQMIPGVGPMMAKRLIEFRKQNGGKVEHFNDFLKVKGIGKKKLELLQKHLTL 170
Score = 39.1 bits (87), Expect = 0.22
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 444 ATEEQLMTLPGVNRQLAREIVRHR-QMIGRFKRVDDLALVSGIGADKLELLRPEI 605
A+ QL +PGV +A+ ++ R Q G+ + +D V GIG KLELL+ +
Sbjct: 114 ASASQLQMIPGVGPMMAKRLIEFRKQNGGKVEHFNDFLKVKGIGKKKLELLQKHL 168
>UniRef50_Q6LNW5 Cluster: Putative DNA uptake protein; n=4;
Vibrionaceae|Rep: Putative DNA uptake protein -
Photobacterium profundum (Photobacterium sp. (strain
SS9))
Length = 94
Score = 40.3 bits (90), Expect = 0.096
Identities = 19/61 (31%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +3
Query: 696 SINSSSVFQL-QCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLS 872
+IN+++ +L + + G+ E A +I+ YR KG F++ DDLI V+G+ + + ++ +
Sbjct: 34 NINNANAEELDKLLIGIGPEKAESIIIYRKEKGDFQTADDLINVKGIGLATVDKNRERIE 93
Query: 873 L 875
L
Sbjct: 94 L 94
Score = 35.9 bits (79), Expect = 2.1
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +3
Query: 429 MNINAATEEQL-MTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
+NIN A E+L L G+ + A I+ +R+ G F+ DDL V GIG ++ R I
Sbjct: 33 ININNANAEELDKLLIGIGPEKAESIIIYRKEKGDFQTADDLINVKGIGLATVDKNRERI 92
>UniRef50_Q080A1 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=1;
Shewanella frigidimarina NCIMB 400|Rep: Competence
protein ComEA helix-hairpin-helix repeat protein
precursor - Shewanella frigidimarina (strain NCIMB 400)
Length = 112
Score = 40.3 bits (90), Expect = 0.096
Identities = 21/59 (35%), Positives = 32/59 (54%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLS 872
+IN +S +LQ + G+ Q A IVDYR + G F L L V G+ +S +++S
Sbjct: 53 NINKASAVELQALKGIGQAKAKAIVDYRTKNGKFTDLKQLTMVTGIGEKLVSQNTENMS 111
Score = 38.7 bits (86), Expect = 0.29
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +3
Query: 390 TFSLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGI 569
T S+ + +NIN A+ +L L G+ + A+ IV +R G+F + L +V+GI
Sbjct: 39 TKSIEKKSTAMQKVNINKASAVELQALKGIGQAKAKAIVDYRTKNGKFTDLKQLTMVTGI 98
Query: 570 G 572
G
Sbjct: 99 G 99
>UniRef50_A6LQS8 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein; n=1; Clostridium
beijerinckii NCIMB 8052|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein - Clostridium
beijerinckii NCIMB 8052
Length = 228
Score = 40.3 bits (90), Expect = 0.096
Identities = 16/60 (26%), Positives = 36/60 (60%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
++NS+++ QL+ + G+ A I++YR + G FKS++++ V G+ +K+ + +
Sbjct: 169 NLNSATLDQLKTLNGIGDSKAKGIIEYREKSGGFKSIEEIKNVSGIGDNMFERIKEQIEV 228
>UniRef50_A6LFY5 Cluster: Putative uncharacterized protein; n=1;
Parabacteroides distasonis ATCC 8503|Rep: Putative
uncharacterized protein - Parabacteroides distasonis
(strain ATCC 8503 / DSM 20701 / NCTC11152)
Length = 242
Score = 40.3 bits (90), Expect = 0.096
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +3
Query: 681 ESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVK 860
+ + +NS+ L+ VPG+ A I+ YR+ G F S++ L +V G+D R +K
Sbjct: 109 QGTVVELNSADTTALKMVPGIGSVFAKRIIKYRDLLGGFYSVEQLGEVYGIDEDRYEAMK 168
Query: 861 QHLSLE 878
S++
Sbjct: 169 SWFSVD 174
>UniRef50_A6GK03 Cluster: Competence protein ComEA-related protein;
n=1; Plesiocystis pacifica SIR-1|Rep: Competence protein
ComEA-related protein - Plesiocystis pacifica SIR-1
Length = 158
Score = 40.3 bits (90), Expect = 0.096
Identities = 25/63 (39%), Positives = 35/63 (55%)
Frame = +3
Query: 411 EEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLEL 590
E + +++N A+ E+L +LPGV LA IV R ++ VD L V GIG +L
Sbjct: 85 ERLAQPVDLNTASVEELASLPGVGPALAARIVAGRP----YRSVDALIEVHGIGPARLAK 140
Query: 591 LRP 599
LRP
Sbjct: 141 LRP 143
>UniRef50_A3M289 Cluster: Putative DNA uptake protein; n=1;
Acinetobacter baumannii ATCC 17978|Rep: Putative DNA
uptake protein - Acinetobacter baumannii (strain ATCC
17978 / NCDC KC 755)
Length = 120
Score = 40.3 bits (90), Expect = 0.096
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +3
Query: 363 KLNKSSLSHTFSLPPSE-----EYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIG 527
KLN S SH+ S+ + +++N A + L G+ + A+ IV +RQ G
Sbjct: 33 KLNISKFSHSNGSKISQTKNFNDSTGQIHLNQANVNEFQQLKGIGEKKAQAIVEYRQKNG 92
Query: 528 RFKRVDDLALVSGIG 572
FK +D++ V GIG
Sbjct: 93 SFKNIDEIKNVKGIG 107
Score = 40.3 bits (90), Expect = 0.096
Identities = 18/59 (30%), Positives = 35/59 (59%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
+N ++V + Q + G+ ++ A IV+YR + G FK++D++ V+G+ K L+L
Sbjct: 62 LNQANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL 120
>UniRef50_Q00XW9 Cluster: Transcriptional accessory protein; n=2;
Ostreococcus|Rep: Transcriptional accessory protein -
Ostreococcus tauri
Length = 948
Score = 40.3 bits (90), Expect = 0.096
Identities = 21/52 (40%), Positives = 28/52 (53%)
Frame = +3
Query: 432 NINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
N N A+E L +PG+ LA +IVRHR G F +L V G+G+ E
Sbjct: 699 NANTASESLLARIPGLGPSLAAKIVRHRTDNGPFAARAELQRVGGVGSKTYE 750
Score = 34.7 bits (76), Expect = 4.8
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +3
Query: 612 HTRKQLSRASSCAHSLDSIRLPSESRL-CSINSSSVFQLQCVPGLNQEIAANIVDYRNRK 788
H K+ + A + A +++S + +R+ + N++S L +PGL +AA IV +R
Sbjct: 674 HDVKEKALADALASTVES----AVARVGANANTASESLLARIPGLGPSLAAKIVRHRTDN 729
Query: 789 GPFKSLDDLIKVRGM 833
GPF + +L +V G+
Sbjct: 730 GPFAARAELQRVGGV 744
>UniRef50_UPI000050F794 Cluster: COG1555: DNA uptake protein and
related DNA-binding proteins; n=1; Brevibacterium linens
BL2|Rep: COG1555: DNA uptake protein and related
DNA-binding proteins - Brevibacterium linens BL2
Length = 302
Score = 39.9 bits (89), Expect = 0.13
Identities = 24/56 (42%), Positives = 30/56 (53%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 596
+N+N A L TLPGV A I+ +R+ F VDDL LV GIG E L+
Sbjct: 242 VNLNTADLTTLETLPGVGPVTAEAIIAYREE-QPFATVDDLLLVPGIGPKTFESLK 296
Score = 35.1 bits (77), Expect = 3.6
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = +3
Query: 675 PSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
P+ ++N++ + L+ +PG+ A I+ YR + PF ++DDL+ V G+
Sbjct: 236 PNSGTAVNLNTADLTTLETLPGVGPVTAEAIIAYREEQ-PFATVDDLLLVPGI 287
>UniRef50_Q8RH48 Cluster: Transcription accessory protein; n=9;
Bacteria|Rep: Transcription accessory protein -
Fusobacterium nucleatum subsp. nucleatum
Length = 723
Score = 39.9 bits (89), Expect = 0.13
Identities = 17/46 (36%), Positives = 30/46 (65%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
+IN++S L + G+ + +A NIV+YR G FK+ ++KV+G+
Sbjct: 492 NINTASWALLSHISGIKKTVAKNIVNYRKENGNFKNRKQILKVKGV 537
Score = 35.1 bits (77), Expect = 3.6
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 432 NINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
NIN A+ L + G+ + +A+ IV +R+ G FK + V G+G E
Sbjct: 492 NINTASWALLSHISGIKKTVAKNIVNYRKENGNFKNRKQILKVKGVGPKAYE 543
>UniRef50_Q67K87 Cluster: Ribosomal protein S1-like RNA-binding
domain; n=42; cellular organisms|Rep: Ribosomal protein
S1-like RNA-binding domain - Symbiobacterium
thermophilum
Length = 764
Score = 39.9 bits (89), Expect = 0.13
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
+N++S LQ V G+ +A IV+YR + G F+S +L+KV G+
Sbjct: 492 LNTASPSLLQYVAGIKASVARAIVEYREKHGKFRSRRELLKVSGL 536
Score = 36.7 bits (81), Expect = 1.2
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
+++N A+ L + G+ +AR IV +R+ G+F+ +L VSG+G E
Sbjct: 490 VDLNTASPSLLQYVAGIKASVARAIVEYREKHGKFRSRRELLKVSGLGPKAFE 542
>UniRef50_Q12LC2 Cluster: Competence protein ComEA
helix-hairpin-helix region precursor; n=1; Shewanella
denitrificans OS217|Rep: Competence protein ComEA
helix-hairpin-helix region precursor - Shewanella
denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
Length = 137
Score = 39.9 bits (89), Expect = 0.13
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
+NIN A ++L L G+ A+ I+ +R+ G+ +D+L VSGIG +E
Sbjct: 77 VNINRADLDELQQLKGIGLAKAKAIIEYREHNGKIDSLDELTQVSGIGEKFIE 129
Score = 34.7 bits (76), Expect = 4.8
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +3
Query: 681 ESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
+S +IN + + +LQ + G+ A I++YR G SLD+L +V G+
Sbjct: 73 DSYRVNINRADLDELQQLKGIGLAKAKAIIEYREHNGKIDSLDELTQVSGI 123
>UniRef50_Q0VNR0 Cluster: ComEA-related protein; n=1; Alcanivorax
borkumensis SK2|Rep: ComEA-related protein - Alcanivorax
borkumensis (strain SK2 / ATCC 700651 / DSM 11573)
Length = 107
Score = 39.9 bits (89), Expect = 0.13
Identities = 22/96 (22%), Positives = 47/96 (48%)
Frame = +3
Query: 582 LELLRPEICTHTRKQLSRASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAA 761
L LL + L AS + + ++S ++N++ + +L+ + G+ + A
Sbjct: 9 LPLLMALVMPAWAADLQAASGTDAAKTATASKAKSHTINLNTADITELEKLNGVGPKTAQ 68
Query: 762 NIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHL 869
I+D+RN +G F S D L+ ++G+ L ++ +
Sbjct: 69 AIIDFRNAQGGFTSPDQLLAIKGIGEKTLEKMRDQI 104
>UniRef50_Q025F6 Cluster: Putative uncharacterized protein
precursor; n=1; Solibacter usitatus Ellin6076|Rep:
Putative uncharacterized protein precursor - Solibacter
usitatus (strain Ellin6076)
Length = 154
Score = 39.9 bits (89), Expect = 0.13
Identities = 19/64 (29%), Positives = 38/64 (59%)
Frame = +3
Query: 681 ESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVK 860
ES++ +NS+ + +++ V G + + +VDYR KG KS ++L+KV G+D + +
Sbjct: 91 ESKV-QMNSAPLVEIKVVLGFSVPESQAVVDYREVKGGIKSFEELLKVPGVDAAKAEAAR 149
Query: 861 QHLS 872
++
Sbjct: 150 AKMA 153
>UniRef50_A7GZA8 Cluster: ComEA protein; n=1; Campylobacter curvus
525.92|Rep: ComEA protein - Campylobacter curvus 525.92
Length = 92
Score = 39.9 bits (89), Expect = 0.13
Identities = 18/46 (39%), Positives = 30/46 (65%)
Frame = +3
Query: 738 GLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
G N+ A NI+ YR + PFKS D+L KV+G++ ++ +K +S+
Sbjct: 35 GFNKSQAMNIIKYR-KAHPFKSTDELTKVKGVNFSQVQKIKDKISV 79
>UniRef50_A5IZ64 Cluster: Putative uncharacterized protein; n=1;
Mycoplasma agalactiae|Rep: Putative uncharacterized
protein - Mycoplasma agalactiae
Length = 720
Score = 39.9 bits (89), Expect = 0.13
Identities = 16/45 (35%), Positives = 32/45 (71%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
+N++S L+ V GLN + NI++YR++ G F++ ++L+KV+ +
Sbjct: 492 LNTASAEILKFVSGLNNKHVQNIIEYRSKIGKFRNREELLKVKSL 536
Score = 35.9 bits (79), Expect = 2.1
Identities = 15/53 (28%), Positives = 31/53 (58%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
+++N A+ E L + G+N + + I+ +R IG+F+ ++L V +G + E
Sbjct: 490 VDLNTASAEILKFVSGLNNKHVQNIIEYRSKIGKFRNREELLKVKSLGENTYE 542
>UniRef50_A4VJE7 Cluster: Putative uncharacterized protein; n=1;
Pseudomonas stutzeri A1501|Rep: Putative uncharacterized
protein - Pseudomonas stutzeri (strain A1501)
Length = 105
Score = 39.9 bits (89), Expect = 0.13
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 738 GLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSLE 878
G+ A IV YR GPF SLD+L++V+G+ + L + LSL+
Sbjct: 59 GIGASKARAIVAYREEHGPFSSLDELLEVKGIGVSTLEQNRGKLSLQ 105
Score = 38.3 bits (85), Expect = 0.39
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +3
Query: 426 LMNINAATEEQLMT-LPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 602
++N+N A + L L G+ AR IV +R+ G F +D+L V GIG LE R +
Sbjct: 42 VVNLNTADAQTLTRELKGIGASKARAIVAYREEHGPFSSLDELLEVKGIGVSTLEQNRGK 101
Query: 603 I 605
+
Sbjct: 102 L 102
>UniRef50_A1ARE9 Cluster: Putative uncharacterized protein; n=1;
Pelobacter propionicus DSM 2379|Rep: Putative
uncharacterized protein - Pelobacter propionicus (strain
DSM 2379)
Length = 222
Score = 39.9 bits (89), Expect = 0.13
Identities = 22/56 (39%), Positives = 28/56 (50%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 596
++INA LPG+ LA IV RQ G R D L V GIG K ++L+
Sbjct: 163 LDINAMDGADFDRLPGIGPVLAARIVEFRQFNGGKMRPDQLIFVKGIGLKKYDILK 218
Score = 33.9 bits (74), Expect = 8.3
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Frame = +3
Query: 597 PEICTHTRKQLSRASSCAHSLDSIRLPSESRLC-----SINSSSVFQLQCVPGLNQEIAA 761
P + + + +LSR+ + + + + L S R+ IN+ +PG+ +AA
Sbjct: 126 PALTSGSTLRLSRSQNNSFVISAGSLSSTERVLLGLPLDINAMDGADFDRLPGIGPVLAA 185
Query: 762 NIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLS 872
IV++R G D LI V+G+ + + +K++ +
Sbjct: 186 RIVEFRQFNGGKMRPDQLIFVKGIGLKKYDILKKYFN 222
>UniRef50_A0W5M0 Cluster: ComEA-related protein precursor; n=1;
Geobacter lovleyi SZ|Rep: ComEA-related protein
precursor - Geobacter lovleyi SZ
Length = 198
Score = 39.9 bits (89), Expect = 0.13
Identities = 22/57 (38%), Positives = 29/57 (50%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 599
+++N ++ LPG+ LA IV RQ G DDL V GIG KL+ L P
Sbjct: 134 LDLNTMSQADFELLPGIGPALAYRIVGFRQKNGDTLAFDDLLQVDGIGEKKLKQLYP 190
Score = 35.5 bits (78), Expect = 2.7
Identities = 20/86 (23%), Positives = 42/86 (48%)
Frame = +3
Query: 630 SRASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLD 809
+RA S+ + +L + +N+ S + +PG+ +A IV +R + G + D
Sbjct: 113 NRALISTTSMKTSQLLTLGLPLDLNTMSQADFELLPGIGPALAYRIVGFRQKNGDTLAFD 172
Query: 810 DLIKVRGMDIVRLSTVKQHLSLELRK 887
DL++V G+ +L + + + + K
Sbjct: 173 DLLQVDGIGEKKLKQLYPYFNHSISK 198
>UniRef50_A7HGA6 Cluster: Helix-hairpin-helix motif precursor; n=2;
Anaeromyxobacter|Rep: Helix-hairpin-helix motif
precursor - Anaeromyxobacter sp. Fw109-5
Length = 109
Score = 39.5 bits (88), Expect = 0.17
Identities = 20/50 (40%), Positives = 31/50 (62%)
Frame = +3
Query: 423 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 572
E +++N A+ +LM LPG+ + A+ IV HR F+R +D+ V GIG
Sbjct: 31 ERIDLNRASVGELMRLPGIGEKRAQAIVAHRTR-QAFRRPEDVLAVKGIG 79
>UniRef50_A7FQJ6 Cluster: RNA-binding protein; n=4; Clostridium
botulinum|Rep: RNA-binding protein - Clostridium
botulinum (strain ATCC 19397 / Type A)
Length = 718
Score = 39.5 bits (88), Expect = 0.17
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
+++N AT L + G+N +A+ IV +R+ IG+FK +L V +G E
Sbjct: 487 VDLNTATPSLLSYISGINSSIAKNIVAYREEIGKFKNRKELLKVKRLGQKAFE 539
Score = 37.9 bits (84), Expect = 0.51
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVR 827
+N+++ L + G+N IA NIV YR G FK+ +L+KV+
Sbjct: 489 LNTATPSLLSYISGINSSIAKNIVAYREEIGKFKNRKELLKVK 531
>UniRef50_A4W7B3 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=2;
Enterobacteriaceae|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein precursor -
Enterobacter sp. 638
Length = 129
Score = 39.5 bits (88), Expect = 0.17
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +3
Query: 396 SLPPSEEYPELMNINAATEEQLM-TLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIG 572
S ++E ++IN+A+ E L + GV + A+ I+ +R G FK +DDL V GIG
Sbjct: 57 SAKATDEEGTQVSINSASAEDLAHAMNGVGLKKAQAIIAYRDEYGPFKTIDDLKQVPGIG 116
Query: 573 ADKLE 587
+E
Sbjct: 117 NSLVE 121
Score = 38.7 bits (86), Expect = 0.29
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +3
Query: 681 ESRLCSINSSSVFQL-QCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTV 857
E SINS+S L + G+ + A I+ YR+ GPFK++DDL +V G+ +
Sbjct: 64 EGTQVSINSASAEDLAHAMNGVGLKKAQAIIAYRDEYGPFKTIDDLKQVPGIGNSLVERN 123
Query: 858 KQHLSL 875
HL+L
Sbjct: 124 LTHLTL 129
>UniRef50_Q17DF5 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 389
Score = 39.5 bits (88), Expect = 0.17
Identities = 16/40 (40%), Positives = 28/40 (70%)
Frame = +3
Query: 435 INAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLA 554
+N + +++ LP V ++A +IV HR + G+FK++DDLA
Sbjct: 331 VNRGSIKEVQILPTVGLKMAYQIVTHRTINGKFKKIDDLA 370
>UniRef50_Q57134 Cluster: Uncharacterized protein HI1008 precursor;
n=14; Pasteurellaceae|Rep: Uncharacterized protein
HI1008 precursor - Haemophilus influenzae
Length = 112
Score = 39.5 bits (88), Expect = 0.17
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +3
Query: 429 MNINAATEEQLM-TLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
+NIN AT ++ +L G+ + A IV++R+ G F + L V GIG LE R I
Sbjct: 51 LNINTATASEIQKSLTGIGAKKAEAIVQYREKHGNFXNAEQLLEVQGIGKATLEKNRDRI 110
>UniRef50_Q3VWX0 Cluster: ComEA-related protein; n=1;
Prosthecochloris aestuarii DSM 271|Rep: ComEA-related
protein - Prosthecochloris aestuarii DSM 271
Length = 182
Score = 39.1 bits (87), Expect = 0.22
Identities = 16/58 (27%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Frame = +3
Query: 708 SSVFQLQCVPGLNQEIAANIVDYR-NRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSLE 878
+ + +L +PG+++ +A ++ +R +R G + D ++V+G+ RL ++QHL L+
Sbjct: 125 AGIDELTSIPGISKVLAGRLITFRKSRNGNIERFQDFLEVKGIGRKRLEILQQHLILQ 182
>UniRef50_A6Q872 Cluster: Transcription accessory protein; n=1;
Sulfurovum sp. NBC37-1|Rep: Transcription accessory
protein - Sulfurovum sp. (strain NBC37-1)
Length = 698
Score = 39.1 bits (87), Expect = 0.22
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
+NS+S L V GL ++A NIV +R +G F S ++KV+G+
Sbjct: 486 VNSASASLLSYVAGLGMKVAENIVKHRESEGTFDSKKAVLKVKGL 530
Score = 33.9 bits (74), Expect = 8.3
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
+++N+A+ L + G+ ++A IV+HR+ G F + V G+GA E
Sbjct: 484 VDVNSASASLLSYVAGLGMKVAENIVKHRESEGTFDSKKAVLKVKGLGAKAYE 536
>UniRef50_A4SD07 Cluster: Helix-hairpin-helix DNA-binding, class 1;
n=2; Chlorobium/Pelodictyon group|Rep:
Helix-hairpin-helix DNA-binding, class 1 -
Prosthecochloris vibrioformis DSM 265
Length = 177
Score = 39.1 bits (87), Expect = 0.22
Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +3
Query: 702 NSSSVFQLQCVPGLNQEIAANIVDYRNRKGP-FKSLDDLIKVRGMDIVRLSTVKQHLSLE 878
N + +LQ + G+ +A ++ +R G + ++L+KV+G+ + +L +K+HLSLE
Sbjct: 118 NRAGSEELQQIKGIGPVMAERLIAFRTENGGRITTFNELLKVKGVGLKKLEILKRHLSLE 177
>UniRef50_A1SHW1 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein; n=1; Nocardioides
sp. JS614|Rep: Competence protein ComEA
helix-hairpin-helix repeat protein - Nocardioides sp.
(strain BAA-499 / JS614)
Length = 300
Score = 39.1 bits (87), Expect = 0.22
Identities = 23/58 (39%), Positives = 31/58 (53%)
Frame = +3
Query: 426 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRP 599
L+++N AT+ +L LP V A+ I+ R G F VD+L V GIG L L P
Sbjct: 239 LVDLNTATQAELEALPEVGPVTAQAILAWRDEHGGFTSVDELLEVDGIGDATLGQLAP 296
>UniRef50_Q2NGF6 Cluster: Putative uncharacterized protein; n=1;
Methanosphaera stadtmanae DSM 3091|Rep: Putative
uncharacterized protein - Methanosphaera stadtmanae
(strain DSM 3091)
Length = 310
Score = 39.1 bits (87), Expect = 0.22
Identities = 28/89 (31%), Positives = 45/89 (50%)
Frame = +3
Query: 369 NKSSLSHTFSLPPSEEYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDD 548
N+ T S+P +E + L+NIN A +L LPG+N LA+++++ RQ ++D
Sbjct: 220 NRKETQPTKSIP-TESF-SLVNINTAGVNELSKLPGINMILAKKLIQLRQDGYIVTSLND 277
Query: 549 LALVSGIGADKLELLRPEICTHTRKQLSR 635
L + +LE L P I + SR
Sbjct: 278 LGQKLNLKEFELEQLEPYITIEQDTRKSR 306
>UniRef50_UPI0000D57194 Cluster: PREDICTED: similar to CG31156-PA,
isoform A; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to CG31156-PA, isoform A - Tribolium castaneum
Length = 753
Score = 38.7 bits (86), Expect = 0.29
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
+N++S L+ V GL+ + A I+DYR GPF S L+KV G+
Sbjct: 519 LNTASRCLLRHVAGLSDKKAQQIIDYRAENGPFISRQQLLKVSGI 563
>UniRef50_A3I0Z9 Cluster: Putative uncharacterized protein; n=1;
Algoriphagus sp. PR1|Rep: Putative uncharacterized
protein - Algoriphagus sp. PR1
Length = 226
Score = 38.7 bits (86), Expect = 0.29
Identities = 31/133 (23%), Positives = 62/133 (46%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEIC 608
++I A L +PG+ LA I++++ +G F + L V G+ + ++ EI
Sbjct: 98 ISILEADSVTLQIVPGIGPSLASRIIKYQHQLGGFHSPNQLLEVYGLKEETVQ----EIW 153
Query: 609 THTRKQLSRASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRK 788
+ + P S+ ++NSS + +L P ++ A +V YRN+
Sbjct: 154 NYFEFE----------------PLISKRINLNSSEITELAKHPYISYSEAKVLVAYRNQH 197
Query: 789 GPFKSLDDLIKVR 827
G +++ DDL+ ++
Sbjct: 198 GDYETADDLLNIK 210
>UniRef50_P0AAR9 Cluster: Uncharacterized protein ybaV precursor;
n=18; Enterobacteriaceae|Rep: Uncharacterized protein
ybaV precursor - Shigella flexneri
Length = 123
Score = 38.7 bits (86), Expect = 0.29
Identities = 20/50 (40%), Positives = 29/50 (58%)
Frame = +3
Query: 438 NAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
NA+ EE + GV + A+ IV +R+ G FK V+DL V G+G +E
Sbjct: 66 NASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115
Score = 37.9 bits (84), Expect = 0.51
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +3
Query: 681 ESRLCSINSSSVFQL-QCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
E SIN++S +L + + G+ + A IV YR GPFK+++DL +V GM
Sbjct: 58 EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGM 109
>UniRef50_Q8N5C6 Cluster: S1 RNA-binding domain-containing protein
1; n=26; Euteleostomi|Rep: S1 RNA-binding
domain-containing protein 1 - Homo sapiens (Human)
Length = 995
Score = 38.7 bits (86), Expect = 0.29
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
IN S L+ + GLN A NI+++R + GPF + + L KV+G+
Sbjct: 710 INICSEVLLRHIAGLNANRAKNIIEWREKNGPFINREQLKKVKGL 754
>UniRef50_UPI0000DB7BEF Cluster: PREDICTED: similar to S1 RNA
binding domain 1; n=1; Apis mellifera|Rep: PREDICTED:
similar to S1 RNA binding domain 1 - Apis mellifera
Length = 740
Score = 38.3 bits (85), Expect = 0.39
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
+N++S L+ V GLN A NI+++R+ GPFK+ L+ V+G+
Sbjct: 492 VNTASQCLLKRVAGLNVSRANNILEWRSEFGPFKNRQQLMDVKGI 536
>UniRef50_Q892P4 Cluster: Come operon protein 1; n=6;
Clostridium|Rep: Come operon protein 1 - Clostridium
tetani
Length = 188
Score = 38.3 bits (85), Expect = 0.39
Identities = 15/59 (25%), Positives = 35/59 (59%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
+N+N A++E+L ++PG+ A +IV +R+ F ++++ + IG E ++ ++
Sbjct: 127 INLNKASKEELKSIPGIGDVTAEKIVNYRKENNGFNSIEEIKNIDRIGEKTFEKIKDKL 185
>UniRef50_Q7MU66 Cluster: Conserved domain protein; n=1;
Porphyromonas gingivalis|Rep: Conserved domain protein -
Porphyromonas gingivalis (Bacteroides gingivalis)
Length = 234
Score = 38.3 bits (85), Expect = 0.39
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +3
Query: 408 SEEYPE--LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADK 581
++++P ++++NAA L +PG+ AR IV +R+ +G + V L V G+ ++
Sbjct: 97 ADKFPRGTVIDLNAADSATLTRIPGIGPTFARRIVSYRRQLGGYYTVLQLQEVYGMDYER 156
Query: 582 LELLRP 599
LRP
Sbjct: 157 FCALRP 162
>UniRef50_Q0YI81 Cluster: Helix-hairpin-helix motif; n=1; Geobacter
sp. FRC-32|Rep: Helix-hairpin-helix motif - Geobacter
sp. FRC-32
Length = 189
Score = 38.3 bits (85), Expect = 0.39
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLR 596
+++ E+ LPG+ A++IV +RQ G F +++L V GI K+E +R
Sbjct: 128 LDLGLMEEDDWEALPGIGPTTAKDIVNYRQDNGGFCSIEELKSVKGISEGKVEKIR 183
>UniRef50_A6Q6F8 Cluster: DNA uptake protein; n=1; Sulfurovum sp.
NBC37-1|Rep: DNA uptake protein - Sulfurovum sp. (strain
NBC37-1)
Length = 111
Score = 38.3 bits (85), Expect = 0.39
Identities = 18/60 (30%), Positives = 34/60 (56%)
Frame = +3
Query: 426 LMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
L +N A++ +LM + G+ + A I++ R+ G+FK +D V GIG + +R ++
Sbjct: 22 LNQLNTASKSELMQIKGIGEKKADAIIKERKK-GKFKSFEDFQRVEGIGEQTAKNVRNDV 80
>UniRef50_Q92DB8 Cluster: Lin0897 protein; n=97; Firmicutes|Rep:
Lin0897 protein - Listeria innocua
Length = 725
Score = 37.9 bits (84), Expect = 0.51
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKV 824
++N++S LQ V GLN+ +A NI YR G F S +L KV
Sbjct: 492 NVNTASASLLQYVAGLNKTVANNIRKYREENGSFTSRKELKKV 534
>UniRef50_Q5E5X2 Cluster: Putative uncharacterized protein; n=1;
Vibrio fischeri ES114|Rep: Putative uncharacterized
protein - Vibrio fischeri (strain ATCC 700601 / ES114)
Length = 219
Score = 37.9 bits (84), Expect = 0.51
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +3
Query: 705 SSSVFQLQC--VPGLNQEIAAN-IVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSL 875
S + L C + L Q++ N I++ P LDDLIK ++ LS + ++ L
Sbjct: 93 SPPAYHLCCKDINALQQKVNNNEIINIDTHHAPLSRLDDLIKTANPSVIDLSNARFNIRL 152
Query: 876 ELRKSESVQHLTNGH 920
S++ H+ GH
Sbjct: 153 STSTSQAAIHVAEGH 167
>UniRef50_A7BWU4 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein; n=1; Beggiatoa sp.
PS|Rep: Competence protein ComEA helix-hairpin-helix
repeat protein - Beggiatoa sp. PS
Length = 143
Score = 37.9 bits (84), Expect = 0.51
Identities = 20/78 (25%), Positives = 39/78 (50%)
Frame = +3
Query: 738 GLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTVKQHLSLELRKSESVQHLTNG 917
G+ ++ IV+YR + GPF+S+ DL KV G+ + + K + + L + ++ T
Sbjct: 56 GIGEKKGIAIVEYREKHGPFQSIYDLDKVYGIGLKTIEKNKDKMMVVLPEEDTTLEQTKA 115
Query: 918 HVNGWNDDXMPHQNGISP 971
++ +NG +P
Sbjct: 116 SSPETDETVGNEKNGETP 133
>UniRef50_A5I0J3 Cluster: Putative membrane protein; n=4;
Clostridium botulinum|Rep: Putative membrane protein -
Clostridium botulinum A str. ATCC 3502
Length = 272
Score = 37.9 bits (84), Expect = 0.51
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +3
Query: 678 SESRLCSINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLSTV 857
+ L INS + +L +PG+ +A V+ RN K F S+D+ I++ G+ + TV
Sbjct: 189 NNEELLDINSCNELELSRLPGMGLILAKKAVNLRNSKNGFDSVDEFIEMVGVKPHFVDTV 248
Query: 858 K 860
K
Sbjct: 249 K 249
Score = 37.9 bits (84), Expect = 0.51
Identities = 21/80 (26%), Positives = 38/80 (47%)
Frame = +3
Query: 423 ELMNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPE 602
EL++IN+ E +L LPG+ LA++ V R F VD+ + G+ ++ ++
Sbjct: 192 ELLDINSCNELELSRLPGMGLILAKKAVNLRNSKNGFDSVDEFIEMVGVKPHFVDTVKSM 251
Query: 603 ICTHTRKQLSRASSCAHSLD 662
IC + K + +D
Sbjct: 252 ICCNPVKTVETVKMSGRRVD 271
>UniRef50_A4M6H3 Cluster: RNA binding S1 domain protein; n=1;
Petrotoga mobilis SJ95|Rep: RNA binding S1 domain
protein - Petrotoga mobilis SJ95
Length = 720
Score = 37.9 bits (84), Expect = 0.51
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +3
Query: 429 MNINAATEEQLMTLPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLE 587
+N+N A+ L + G+ LA++IV++RQ G F + DL V G G E
Sbjct: 480 VNLNTASYSLLEYVSGITSSLAKKIVQYRQKNGSFNKRADLLNVKGFGEKAFE 532
Score = 37.5 bits (83), Expect = 0.68
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 696 SINSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRG 830
++N++S L+ V G+ +A IV YR + G F DL+ V+G
Sbjct: 481 NLNTASYSLLEYVSGITSSLAKKIVQYRQKNGSFNKRADLLNVKG 525
>UniRef50_A3ZZ79 Cluster: Ribosomal protein S1-like RNA-binding
domain protein; n=1; Blastopirellula marina DSM
3645|Rep: Ribosomal protein S1-like RNA-binding domain
protein - Blastopirellula marina DSM 3645
Length = 1043
Score = 37.9 bits (84), Expect = 0.51
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRG 830
+N +S L V GLNQ A + +YR + GPF S ++ KV G
Sbjct: 609 VNQASPALLSYVSGLNQLTARRLYEYRRQNGPFTSREEFKKVAG 652
>UniRef50_A0YFD4 Cluster: Competence protein ComEA
helix-hairpin-helix region; n=1; marine gamma
proteobacterium HTCC2143|Rep: Competence protein ComEA
helix-hairpin-helix region - marine gamma
proteobacterium HTCC2143
Length = 91
Score = 37.9 bits (84), Expect = 0.51
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +3
Query: 675 PSESRLCSINSSSVFQLQC-VPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGMDIVRLS 851
P S +IN++ L + G+ A IV YR+ GPFKS+++L VRG+ L+
Sbjct: 23 PPVSSPVNINTADAATLSASLKGVGSSKAQAIVTYRDNYGPFKSVEELTAVRGIGDSLLA 82
Query: 852 TVKQHLSLE 878
K + LE
Sbjct: 83 KNKDIILLE 91
>UniRef50_A0IWY1 Cluster: Competence protein ComEA
helix-hairpin-helix repeat protein precursor; n=1;
Serratia proteamaculans 568|Rep: Competence protein
ComEA helix-hairpin-helix repeat protein precursor -
Serratia proteamaculans 568
Length = 129
Score = 37.9 bits (84), Expect = 0.51
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 429 MNINAATEEQLMT-LPGVNRQLAREIVRHRQMIGRFKRVDDLALVSGIGADKLELLRPEI 605
++IN A EQL + L GV + A IVR+R+ G F +++ L V GIG E R +
Sbjct: 68 VSINQADAEQLASILKGVGLKKAESIVRYREQNGPFTQIEQLQEVPGIGPALFERNRARL 127
Score = 34.7 bits (76), Expect = 4.8
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +3
Query: 636 ASSCAHSLDSIRLPSESRLCSINSSSVFQLQCV-PGLNQEIAANIVDYRNRKGPFKSLDD 812
A++ +++ ++ SIN + QL + G+ + A +IV YR + GPF ++
Sbjct: 49 AANAGQGAEAVAAANDEASVSINQADAEQLASILKGVGLKKAESIVRYREQNGPFTQIEQ 108
Query: 813 LIKVRGM 833
L +V G+
Sbjct: 109 LQEVPGI 115
>UniRef50_A7S4Y8 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 717
Score = 37.9 bits (84), Expect = 0.51
Identities = 16/45 (35%), Positives = 30/45 (66%)
Frame = +3
Query: 699 INSSSVFQLQCVPGLNQEIAANIVDYRNRKGPFKSLDDLIKVRGM 833
+N++ V L+C+ GLN++ A IV+YR + F + L++V+G+
Sbjct: 431 LNAAGVSLLKCLSGLNEKRAQAIVEYREKNNGFVNRAQLLEVKGI 475
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,045,447,840
Number of Sequences: 1657284
Number of extensions: 20215451
Number of successful extensions: 47479
Number of sequences better than 10.0: 304
Number of HSP's better than 10.0 without gapping: 45150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47415
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 119538648642
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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