Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_I19
         (1191 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           28   2.2  
SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   3.9  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   3.9  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    26   9.0  

>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 366 LNKSSLSHTFSLPPSEEYPELMNI---NAATEEQLMTLPGVNRQLAREIVRHR 515
           +N +SLS   +  P  ++P   +      +TE    TLP +N    RE+ +H+
Sbjct: 237 INSTSLSFVDAKKPGSKWPSQYDFPKKTKSTEIPFKTLPSLNINNERELTKHK 289


>SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 117

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 372 KSSLSHTFSLPPSEEYPELMNINAATEEQLMTL 470
           K S S+T S    + YP + +INA T+  + T+
Sbjct: 47  KGSTSYTISFNKCQAYPNINSINALTDGAVCTV 79


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
 Frame = -3

Query: 772  STIFAAISWLSPGTH*SWNTLDELIEHSLLSEGKRMLSNECAQELARDNCFLVCVHISGL 593
            +TIF +IS  S G   S  T+      +  SE +   ++  +          +   +S  
Sbjct: 744  NTIFTSISQSSDGET-SGYTISSNSSQNSASEPQTAFTSSSSSATPTITQSSISTSVSSQ 802

Query: 592  S--NSSLSAPIPETNARSSTLLKRPIICLWRTISRASCLFTPGRVISCSSVAALMFISSG 419
            S  NSS S+PI   +  SST +   I         AS  +T   + S SS+A+  F +SG
Sbjct: 803  SSMNSSYSSPISSNSVTSSTSIISSI---------ASSSYT--SIPSISSIASSFFDASG 851

Query: 418  YSS 410
            ++S
Sbjct: 852  FTS 854


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 961 PFWWGMXSSFHPFTWPLVKCWTLSDLRNSRLRCCFTV 851
           P +  + S  H     L  C+TL DLR S L C   V
Sbjct: 277 PDYERIHSDIHVRITNLPTCFTLRDLRQSHLNCLVRV 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,417,240
Number of Sequences: 5004
Number of extensions: 89221
Number of successful extensions: 208
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 641482604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)