Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_I19
(1191 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1129 + 9326975-9327071,9327174-9327306,9327408-9327479,932... 31 1.3
11_04_0169 + 14397380-14397652,14398317-14398874,14399593-143998... 30 4.1
02_03_0377 + 18319288-18319527,18319936-18320331 30 4.1
02_01_0354 + 2551675-2551874,2552721-2552833,2552982-2553170,255... 30 4.1
04_01_0150 + 1741639-1741742,1742432-1742543,1742856-1743594,174... 29 7.2
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10... 29 9.5
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 29 9.5
04_04_1372 + 33008740-33009130,33009485-33011544 29 9.5
>06_01_1129 +
9326975-9327071,9327174-9327306,9327408-9327479,
9327593-9327736,9327950-9328021,9328219-9328278,
9328384-9328637,9329940-9330281,9332001-9332380,
9333867-9334235
Length = 640
Score = 31.5 bits (68), Expect = 1.3
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = -3
Query: 595 LSNSSLSAPIPETNARSSTLLKRPIIC 515
LS ++LS PIPE+ AR+ ++ P+IC
Sbjct: 175 LSYNNLSGPIPESLARTYNIVGNPLIC 201
>11_04_0169 +
14397380-14397652,14398317-14398874,14399593-14399823,
14399924-14400064,14401051-14401248,14401319-14401591,
14401959-14401976
Length = 563
Score = 29.9 bits (64), Expect = 4.1
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = +3
Query: 606 CTHTRKQLSRASSCAHSLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIAANIV 770
C H S +S + S S PS S CS + F++ C AA +V
Sbjct: 13 CPHAHHHHSTSSLPSSSSSSTSAPSSSSRCSFSRGGPFRVHCAVTATTSAAAPVV 67
>02_03_0377 + 18319288-18319527,18319936-18320331
Length = 211
Score = 29.9 bits (64), Expect = 4.1
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +3
Query: 582 LELLRPEICTHTRKQLSRASSCAH-SLDSIRLPSESRLCSINSSSVFQLQCVPGLNQEIA 758
LE ++P C+H ++S+ + D ++ ++ + I +V + V N E++
Sbjct: 90 LEQVKPN-CSHPNPEISKEVKLGDVAKDLNKIKRQNMITHILLGTVIVMTAVWQFN-EVS 147
Query: 759 ANIVDYRNRKGPFKSLDDLIK 821
+ R PFKSL DLIK
Sbjct: 148 FLLAVKRKLSNPFKSLGDLIK 168
>02_01_0354 +
2551675-2551874,2552721-2552833,2552982-2553170,
2553667-2553737,2553835-2553909,2553983-2554209,
2554361-2554550,2554627-2554692,2554807-2554895,
2554990-2555104,2555190-2555241,2555317-2555417,
2555516-2555629
Length = 533
Score = 29.9 bits (64), Expect = 4.1
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Frame = -3
Query: 964 IPFWWGMXSSF--HPFTWPLVKCWTLSDLRNSRLRCCFTVLSLTISIPRTFIKSSNDLKG 791
+P W + F HPF W V + +D R C + + + +SI R + S
Sbjct: 275 VPSWTRLIQGFEVHPFVW--VFNYIFTDSRERLALCAYWIFVIYVSIRRFYSISKQSKTE 332
Query: 790 PFLLR*STIFAAISWLSP 737
LLR A+ SP
Sbjct: 333 RILLRKYYHLVAVLIFSP 350
>04_01_0150 +
1741639-1741742,1742432-1742543,1742856-1743594,
1743724-1743776,1743914-1743991,1744107-1744405,
1744660-1745476,1745576-1745842,1745987-1746181,
1746287-1746372,1746469-1746657,1747138-1747207,
1747399-1747552,1747706-1747832,1749158-1749254
Length = 1128
Score = 29.1 bits (62), Expect = 7.2
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 414 EYPELMNINAATEEQLMTLPGVNRQLAREIVRHRQMI 524
EY +++++ TEEQL +LP N + R I RH + I
Sbjct: 350 EYDQIVHVPKLTEEQLRSLPVENAEKLRRI-RHVKKI 385
>12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-106310,
106787-106825,107026-107109,107193-107241,107331-107422,
107680-107809,107906-107982,108058-109676,110024-110221,
110287-110825
Length = 1109
Score = 28.7 bits (61), Expect = 9.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 852 TVKQHLSLELRKSESVQHLTNGHVNGWND 938
++ + + L++ S HLTNGH +GW D
Sbjct: 1043 SLSSYTQMSLQQPRS-SHLTNGHWDGWGD 1070
>11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 28.7 bits (61), Expect = 9.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 852 TVKQHLSLELRKSESVQHLTNGHVNGWND 938
++ + + L++ S HLTNGH +GW D
Sbjct: 1100 SLSSYTQMSLQQPRS-SHLTNGHWDGWGD 1127
>04_04_1372 + 33008740-33009130,33009485-33011544
Length = 816
Score = 28.7 bits (61), Expect = 9.5
Identities = 39/152 (25%), Positives = 60/152 (39%), Gaps = 4/152 (2%)
Frame = -3
Query: 862 CFTVLSLTISIPRTFIKSSNDLKG---PFLLR*STIFAAISWLSPGTH*SWNTLDELIEH 692
C T L L FI S N L G PF S+ A+ +H +N E +++
Sbjct: 503 CMTALELDF-----FIVSHNSLSGHIVPFSFFNSSTVMALDL----SHNQFNGNIEWVQY 553
Query: 691 SLLSEGKRMLSNECAQELARDNCFLVCVHISGLSNSSLSAPIPETNARSSTLLKRPI-IC 515
S+ + SN+ +++ C L + I S++SLS P+P S + P+ I
Sbjct: 554 LGESKYLSLGSNKFEGQISPSLCQLQSLRILDFSHNSLSGPLPSCIGNLS-FGQNPVGIP 612
Query: 514 LWRTISRASCLFTPGRVISCSSVAALMFISSG 419
LW I + I C F + G
Sbjct: 613 LWSLICENHFRYPIFDYIGCYEERGFSFRTKG 644
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,760,649
Number of Sequences: 37544
Number of extensions: 546372
Number of successful extensions: 1440
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1438
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3631571424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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