Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_I19
         (1191 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.99 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.99 
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    24   3.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   3.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   7.0  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.4 bits (53), Expect = 0.99
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 639 WPVTTVSLCAYIFLVSVILVYQLQYL 562
           W +TT ++C  +F  ++I    ++YL
Sbjct: 495 WTITTPAICVGVFTFNIIKFVPVKYL 520


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.4 bits (53), Expect = 0.99
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 639 WPVTTVSLCAYIFLVSVILVYQLQYL 562
           W +TT ++C  +F  ++I    ++YL
Sbjct: 548 WTITTPAICVGVFTFNIIKFVPVKYL 573


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +2

Query: 701 QFIQCVPTSVCAWTQ-PRNSCKYCRL 775
           Q+  C     C+  +  RN C+YCRL
Sbjct: 51  QYRPCTKNQQCSILRINRNRCQYCRL 76


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +2

Query: 701 QFIQCVPTSVCAWTQ-PRNSCKYCRL 775
           Q+  C     C+  +  RN C+YCRL
Sbjct: 100 QYRPCTKNQQCSILRINRNRCQYCRL 125


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 852 YLA*QYPYHELLLNHPMI*KALFYYGNL 769
           Y+  + PY +++ N  +  K LFY  NL
Sbjct: 216 YICCEEPYPDIVFNITLRRKTLFYTVNL 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 294,207
Number of Sequences: 438
Number of extensions: 5902
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40608837
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)