Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_I18
         (1240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.58 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   7.1  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 30.3 bits (65), Expect = 0.58
 Identities = 18/41 (43%), Positives = 18/41 (43%)
 Frame = -3

Query: 755 GGPPGXFXGGXXGXFXVPXGFSXFDXGGXFXXFFXGGGPFG 633
           GG PG F GG  G    P GF     GG    F  G G FG
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGF-----GGGLGGFGGGPGGFG 262


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -3

Query: 911 PXXSPGGXPPPPXWXPPPSXXXXTPP 834
           P  +P   PPPP + PP       PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
 Frame = -3

Query: 911  PXXSPGGXPPPPXWXPPPSXXXXT--PPLXXXKAPLXP 804
            P   P   PPPP   P P+       PPL    AP  P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,052,601
Number of Sequences: 5004
Number of extensions: 19055
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 673357516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)