Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_I18
(1240 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 38 0.015
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 38 0.015
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 38 0.015
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 33 0.42
U14635-8|AAK84492.1| 307|Caenorhabditis elegans Collagen protei... 33 0.55
L15418-1|AAA17445.1| 307|Caenorhabditis elegans col-36 collagen... 33 0.55
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.73
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.73
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.73
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 32 0.96
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 31 1.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 2.2
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 2.2
AF098985-5|AAC67418.1| 99|Caenorhabditis elegans Hypothetical ... 30 3.9
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 29 5.1
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 6.8
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 29 9.0
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 37.9 bits (84), Expect = 0.015
Identities = 17/39 (43%), Positives = 18/39 (46%)
Frame = -3
Query: 950 PGGXXXVFXGXGAPXXSPGGXPPPPXWXPPPSXXXXTPP 834
PGG + G P PGG PPPP PPP PP
Sbjct: 748 PGGLPPISGGPPPPPPPPGGCPPPPP-PPPPGGFKGGPP 785
Score = 31.5 bits (68), Expect = 1.3
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Frame = -3
Query: 923 GXGAPXXSPGGXPPPPXWXPPPSXXXXTPPL--XXXKAPLXPXGKRRTGXR*XAGXVXGG 750
G P PGG PP PPP PP+ P P G G GG
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
Query: 749 PP 744
PP
Sbjct: 784 PP 785
Score = 30.7 bits (66), Expect = 2.2
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Frame = -3
Query: 950 PGGXXXVFXGXGAPXXSPGGXPP----PPXWXPPPSXXXXTPP 834
PGG + G P PGG PP PP PPP PP
Sbjct: 732 PGGLPPITGGP-PPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 37.9 bits (84), Expect = 0.015
Identities = 17/39 (43%), Positives = 18/39 (46%)
Frame = -3
Query: 950 PGGXXXVFXGXGAPXXSPGGXPPPPXWXPPPSXXXXTPP 834
PGG + G P PGG PPPP PPP PP
Sbjct: 748 PGGLPPISGGPPPPPPPPGGCPPPPP-PPPPGGFKGGPP 785
Score = 31.5 bits (68), Expect = 1.3
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Frame = -3
Query: 923 GXGAPXXSPGGXPPPPXWXPPPSXXXXTPPL--XXXKAPLXPXGKRRTGXR*XAGXVXGG 750
G P PGG PP PPP PP+ P P G G GG
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
Query: 749 PP 744
PP
Sbjct: 784 PP 785
Score = 30.7 bits (66), Expect = 2.2
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Frame = -3
Query: 950 PGGXXXVFXGXGAPXXSPGGXPP----PPXWXPPPSXXXXTPP 834
PGG + G P PGG PP PP PPP PP
Sbjct: 732 PGGLPPITGGP-PPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 37.9 bits (84), Expect = 0.015
Identities = 17/39 (43%), Positives = 18/39 (46%)
Frame = -3
Query: 950 PGGXXXVFXGXGAPXXSPGGXPPPPXWXPPPSXXXXTPP 834
PGG + G P PGG PPPP PPP PP
Sbjct: 331 PGGLPPISGGPPPPPPPPGGCPPPPP-PPPPGGFKGGPP 368
Score = 31.5 bits (68), Expect = 1.3
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Frame = -3
Query: 923 GXGAPXXSPGGXPPPPXWXPPPSXXXXTPPL--XXXKAPLXPXGKRRTGXR*XAGXVXGG 750
G P PGG PP PPP PP+ P P G G GG
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 366
Query: 749 PP 744
PP
Sbjct: 367 PP 368
Score = 30.7 bits (66), Expect = 2.2
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Frame = -3
Query: 950 PGGXXXVFXGXGAPXXSPGGXPP----PPXWXPPPSXXXXTPP 834
PGG + G P PGG PP PP PPP PP
Sbjct: 315 PGGLPPITGGP-PPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 356
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 33.1 bits (72), Expect = 0.42
Identities = 29/123 (23%), Positives = 33/123 (26%), Gaps = 4/123 (3%)
Frame = +1
Query: 613 GRVXXXXPKGPPPXKKXXKXPPXSKXEKPXGTIXXPXXPPXKXPGGPP----XTXPAXYR 780
G+ P GPP P P G P P + P GPP P
Sbjct: 161 GKPGSEGPPGPPGHDGPNGGPGQPGQPGPHGPNGHPGKPGSQGPPGPPGHSDEPKPGQPG 220
Query: 781 XPVRLXPXGKRGAXSXXRXXXXXXXXXXXXQXGGGGXPPGEXXGAPXPXKTXXXPPGKKN 960
P R P G RG GG G P + PG+K
Sbjct: 221 QPGRAGPRGPRGVAGIKGKDGAPGSPGQPGPRGGPGEPGQDGAPGQPGLPGSDGTPGEKG 280
Query: 961 XXP 969
P
Sbjct: 281 ICP 283
>U14635-8|AAK84492.1| 307|Caenorhabditis elegans Collagen protein
36 protein.
Length = 307
Score = 32.7 bits (71), Expect = 0.55
Identities = 47/166 (28%), Positives = 51/166 (30%), Gaps = 7/166 (4%)
Frame = +1
Query: 475 PXPGPPXGXXGIXXXXGGXTVXXKXGGXPRKKXXXKRPXKGXXP*X-GRVXXXXPKGPP- 648
P P G G G V K G P P G V PKGPP
Sbjct: 123 PGPAGDTGPNGNDGHHGAPGVPGKEGSILSSALPPSEPCIICPPGPQGAVGQQGPKGPPG 182
Query: 649 PXKKXXKXPPXSKXEKPXGTIXXPXXPPXKXPGGPPXTXPAXYRXPV-----RLXPXGKR 813
P K + K +P G I P P GPP PA V P G R
Sbjct: 183 PKGKSQERAADGKNGEP-GMIGPPGPPGGVGEPGPP--GPAGQPGRVIQVNGAAGPAGPR 239
Query: 814 GAXSXXRXXXXXXXXXXXXQXGGGGXPPGEXXGAPXPXKTXXXPPG 951
G + GG G PPG+ G P P PPG
Sbjct: 240 GVKGPP-GPKGLPGIAGLTEIGGQG-PPGD-AGGPGPV-GGQGPPG 281
>L15418-1|AAA17445.1| 307|Caenorhabditis elegans col-36 collagen
protein.
Length = 307
Score = 32.7 bits (71), Expect = 0.55
Identities = 47/166 (28%), Positives = 51/166 (30%), Gaps = 7/166 (4%)
Frame = +1
Query: 475 PXPGPPXGXXGIXXXXGGXTVXXKXGGXPRKKXXXKRPXKGXXP*X-GRVXXXXPKGPP- 648
P P G G G V K G P P G V PKGPP
Sbjct: 123 PGPAGDTGPNGNDGHHGAPGVPGKEGSILSSALPPSEPCIICPPGPQGAVGQQGPKGPPG 182
Query: 649 PXKKXXKXPPXSKXEKPXGTIXXPXXPPXKXPGGPPXTXPAXYRXPV-----RLXPXGKR 813
P K + K +P G I P P GPP PA V P G R
Sbjct: 183 PKGKSQERAADGKNGEP-GMIGPPGPPGGVGEPGPP--GPAGQPGRVIQVNGAAGPAGPR 239
Query: 814 GAXSXXRXXXXXXXXXXXXQXGGGGXPPGEXXGAPXPXKTXXXPPG 951
G + GG G PPG+ G P P PPG
Sbjct: 240 GVKGPP-GPKGLPGIAGLTEIGGQG-PPGD-AGGPGPV-GGQGPPG 281
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.3 bits (70), Expect = 0.73
Identities = 26/105 (24%), Positives = 29/105 (27%)
Frame = +1
Query: 634 PKGPPPXKKXXKXPPXSKXEKPXGTIXXPXXPPXKXPGGPPXTXPAXYRXPVRLXPXGKR 813
P G PP PP K P P PP PP T P
Sbjct: 233 PAGSPPP------PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 286
Query: 814 GAXSXXRXXXXXXXXXXXXQXGGGGXPPGEXXGAPXPXKTXXXPP 948
G+ R G PP + G+P P T PP
Sbjct: 287 GSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 331
Score = 31.5 bits (68), Expect = 1.3
Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Frame = +1
Query: 643 PPPXKKXXKXPPXSKXEKPXGTIXXP---XXPPXKXPGGPPXTXPAXYRXPVRLXPXG 807
PPP PP + P G++ P PP G PP + P R P G
Sbjct: 290 PPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTG 347
Score = 31.1 bits (67), Expect = 1.7
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = -3
Query: 911 PXXSPGGXPPPPXWXPPPSXXXXTPPLXXXKAPLXPXGKR 792
P G PPPP PPP +PP +P P R
Sbjct: 265 PPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPR 304
Score = 29.9 bits (64), Expect = 3.9
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Frame = -3
Query: 917 GAPXXSPGGXPPPP--XWXPPPSXXXXTPPLXXXKAPLXPXG 798
G+P + G PPPP PPP PP P P G
Sbjct: 245 GSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 286
Score = 29.9 bits (64), Expect = 3.9
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = -3
Query: 923 GXGAPXXSPG-GXPPPPXWXPPPSXXXXTPP 834
G G+P P G PPPP PP +PP
Sbjct: 251 GSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 281
Score = 29.1 bits (62), Expect = 6.8
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = -3
Query: 917 GAPXXSPGGXPPPPX--WXPPPSXXXXTPPLXXXKAPLXPXGKRRTG 783
G+P P G PPPP PPP PP P P G TG
Sbjct: 270 GSPPPPPTGSPPPPPAGGSPPPPRAGSPPP------PPPPRGSPPTG 310
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.3 bits (70), Expect = 0.73
Identities = 26/105 (24%), Positives = 29/105 (27%)
Frame = +1
Query: 634 PKGPPPXKKXXKXPPXSKXEKPXGTIXXPXXPPXKXPGGPPXTXPAXYRXPVRLXPXGKR 813
P G PP PP K P P PP PP T P
Sbjct: 254 PAGSPPP------PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 307
Query: 814 GAXSXXRXXXXXXXXXXXXQXGGGGXPPGEXXGAPXPXKTXXXPP 948
G+ R G PP + G+P P T PP
Sbjct: 308 GSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 352
Score = 31.5 bits (68), Expect = 1.3
Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Frame = +1
Query: 643 PPPXKKXXKXPPXSKXEKPXGTIXXP---XXPPXKXPGGPPXTXPAXYRXPVRLXPXG 807
PPP PP + P G++ P PP G PP + P R P G
Sbjct: 311 PPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTG 368
Score = 31.1 bits (67), Expect = 1.7
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = -3
Query: 911 PXXSPGGXPPPPXWXPPPSXXXXTPPLXXXKAPLXPXGKR 792
P G PPPP PPP +PP +P P R
Sbjct: 286 PPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPR 325
Score = 29.9 bits (64), Expect = 3.9
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Frame = -3
Query: 917 GAPXXSPGGXPPPP--XWXPPPSXXXXTPPLXXXKAPLXPXG 798
G+P + G PPPP PPP PP P P G
Sbjct: 266 GSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 307
Score = 29.9 bits (64), Expect = 3.9
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = -3
Query: 923 GXGAPXXSPG-GXPPPPXWXPPPSXXXXTPP 834
G G+P P G PPPP PP +PP
Sbjct: 272 GSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 302
Score = 29.1 bits (62), Expect = 6.8
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = -3
Query: 917 GAPXXSPGGXPPPPX--WXPPPSXXXXTPPLXXXKAPLXPXGKRRTG 783
G+P P G PPPP PPP PP P P G TG
Sbjct: 291 GSPPPPPTGSPPPPPAGGSPPPPRAGSPPP------PPPPRGSPPTG 331
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.3 bits (70), Expect = 0.73
Identities = 26/105 (24%), Positives = 29/105 (27%)
Frame = +1
Query: 634 PKGPPPXKKXXKXPPXSKXEKPXGTIXXPXXPPXKXPGGPPXTXPAXYRXPVRLXPXGKR 813
P G PP PP K P P PP PP T P
Sbjct: 239 PAGSPPP------PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 292
Query: 814 GAXSXXRXXXXXXXXXXXXQXGGGGXPPGEXXGAPXPXKTXXXPP 948
G+ R G PP + G+P P T PP
Sbjct: 293 GSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 337
Score = 31.5 bits (68), Expect = 1.3
Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Frame = +1
Query: 643 PPPXKKXXKXPPXSKXEKPXGTIXXP---XXPPXKXPGGPPXTXPAXYRXPVRLXPXG 807
PPP PP + P G++ P PP G PP + P R P G
Sbjct: 296 PPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTG 353
Score = 31.1 bits (67), Expect = 1.7
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = -3
Query: 911 PXXSPGGXPPPPXWXPPPSXXXXTPPLXXXKAPLXPXGKR 792
P G PPPP PPP +PP +P P R
Sbjct: 271 PPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPR 310
Score = 29.9 bits (64), Expect = 3.9
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Frame = -3
Query: 917 GAPXXSPGGXPPPP--XWXPPPSXXXXTPPLXXXKAPLXPXG 798
G+P + G PPPP PPP PP P P G
Sbjct: 251 GSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 292
Score = 29.9 bits (64), Expect = 3.9
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = -3
Query: 923 GXGAPXXSPG-GXPPPPXWXPPPSXXXXTPP 834
G G+P P G PPPP PP +PP
Sbjct: 257 GSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 287
Score = 29.1 bits (62), Expect = 6.8
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = -3
Query: 917 GAPXXSPGGXPPPPX--WXPPPSXXXXTPPLXXXKAPLXPXGKRRTG 783
G+P P G PPPP PPP PP P P G TG
Sbjct: 276 GSPPPPPTGSPPPPPAGGSPPPPRAGSPPP------PPPPRGSPPTG 316
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 31.9 bits (69), Expect = 0.96
Identities = 35/112 (31%), Positives = 37/112 (33%), Gaps = 9/112 (8%)
Frame = -3
Query: 947 GGXXXVFXGXGAPXXSPGGXPP--------PPXWXPP-PSXXXXTPPLXXXKAPLXPXGK 795
GG +F GAP P G PP PP PP P PP P P G
Sbjct: 164 GGPPGLFDPSGAP---PSGGPPGPFGPSGAPPSGGPPGPFNPSEAPPSGGPTGPFDPSGA 220
Query: 794 RRTGXR*XAGXVXGGPPGXFXGGXXGXFXVPXGFSXFDXGGXFXXFFXGGGP 639
+G G PP GG G F P G GG F G P
Sbjct: 221 PPSGGPPGPFNPSGAPPS---GGPPGPFD-PSGAP--PSGGPPGPFNPSGAP 266
Score = 31.9 bits (69), Expect = 0.96
Identities = 34/109 (31%), Positives = 36/109 (33%), Gaps = 6/109 (5%)
Frame = -3
Query: 947 GGXXXVFXGXGAPXXS--PGGXPP---PPXWXPP-PSXXXXTPPLXXXKAPLXPXGKRRT 786
GG F GAP PG P PP PP P PP P P G + +
Sbjct: 254 GGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAQPS 313
Query: 785 GXR*XAGXVXGGPPGXFXGGXXGXFXVPXGFSXFDXGGXFXXFFXGGGP 639
G G PP GG G F P G GG F G P
Sbjct: 314 GGPPGPFNPSGAPPS---GGPPGPFD-PSGAP--PSGGPPGPFNPSGAP 356
Score = 31.1 bits (67), Expect = 1.7
Identities = 34/109 (31%), Positives = 35/109 (32%), Gaps = 6/109 (5%)
Frame = -3
Query: 947 GGXXXVFXGXGAPXXS--PGGXPP---PPXWXPP-PSXXXXTPPLXXXKAPLXPXGKRRT 786
GG F GAP PG P PP PP P PP P P G +
Sbjct: 224 GGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPS 283
Query: 785 GXR*XAGXVXGGPPGXFXGGXXGXFXVPXGFSXFDXGGXFXXFFXGGGP 639
G G PP GG G F P G GG F G P
Sbjct: 284 GGPPGPFDPSGAPPS---GGPPGPFD-PSGAQ--PSGGPPGPFNPSGAP 326
Score = 30.7 bits (66), Expect = 2.2
Identities = 34/109 (31%), Positives = 35/109 (32%), Gaps = 6/109 (5%)
Frame = -3
Query: 947 GGXXXVFXGXGAPXXS--PGGXPP---PPXWXPP-PSXXXXTPPLXXXKAPLXPXGKRRT 786
GG F GAP PG P PP PP P PP P P G +
Sbjct: 314 GGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPS 373
Query: 785 GXR*XAGXVXGGPPGXFXGGXXGXFXVPXGFSXFDXGGXFXXFFXGGGP 639
G G PP GG G F P G GG F G P
Sbjct: 374 GGPPGPFDPSGAPPS---GGPPGPFD-PSGAP--PSGGPPGPFNPSGAP 416
Score = 30.7 bits (66), Expect = 2.2
Identities = 34/109 (31%), Positives = 35/109 (32%), Gaps = 6/109 (5%)
Frame = -3
Query: 947 GGXXXVFXGXGAPXXS--PGGXPP---PPXWXPP-PSXXXXTPPLXXXKAPLXPXGKRRT 786
GG F GAP PG P PP PP P PP P P G +
Sbjct: 359 GGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPS 418
Query: 785 GXR*XAGXVXGGPPGXFXGGXXGXFXVPXGFSXFDXGGXFXXFFXGGGP 639
G G PP GG G F P G GG F G P
Sbjct: 419 GGPPGPFNPSGAPPS---GGPPGPFN-PSGAP--PSGGPPGPFNPSGAP 461
Score = 30.7 bits (66), Expect = 2.2
Identities = 35/112 (31%), Positives = 36/112 (32%), Gaps = 9/112 (8%)
Frame = -3
Query: 947 GGXXXVFXGXGAPXXSPGGXPP--------PPXWXPP-PSXXXXTPPLXXXKAPLXPXGK 795
GG F GAP P G PP PP PP P PP P P G
Sbjct: 404 GGPPGPFNPSGAP---PSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGA 460
Query: 794 RRTGXR*XAGXVXGGPPGXFXGGXXGXFXVPXGFSXFDXGGXFXXFFXGGGP 639
+G G PP GG G F P G GG F G P
Sbjct: 461 PPSGGPPGPFNPSGAPPS---GGPPGPFD-PSGAP--PSGGPPGPFNPSGAP 506
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 31.5 bits (68), Expect = 1.3
Identities = 26/79 (32%), Positives = 27/79 (34%), Gaps = 1/79 (1%)
Frame = -3
Query: 929 FXGXGAPXXS-PGGXPPPPXWXPPPSXXXXTPPLXXXKAPLXPXGKRRTGXR*XAGXVXG 753
F G P S PG PPP PP + PP AP P G G G
Sbjct: 364 FGGPPPPVSSAPGNFAPPPQSGPPGA---FAPPPSAFGAPQGPGGPGGYGPPPPGGPGAP 420
Query: 752 GPPGXFXGGXXGXFXVPXG 696
G G GG G P G
Sbjct: 421 GSYGPPQGGPGGFGPPPPG 439
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 2.2
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = +1
Query: 640 GPPPXKKXXKXPPXSKXEKPX-GTIXXPXXPPXKXPGGPPXTXPAXY 777
GPP PP S+ P G + P P + PGG P P Y
Sbjct: 309 GPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRY 355
Score = 29.9 bits (64), Expect = 3.9
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = -3
Query: 899 PGGXPPPPXWXPPPSXXXXTPPLXXXKAPLXPXG 798
PGG PPPP P + PP + P P G
Sbjct: 344 PGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSG 377
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 2.2
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = +1
Query: 640 GPPPXKKXXKXPPXSKXEKPX-GTIXXPXXPPXKXPGGPPXTXPAXY 777
GPP PP S+ P G + P P + PGG P P Y
Sbjct: 319 GPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRY 365
Score = 29.9 bits (64), Expect = 3.9
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = -3
Query: 899 PGGXPPPPXWXPPPSXXXXTPPLXXXKAPLXPXG 798
PGG PPPP P + PP + P P G
Sbjct: 354 PGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSG 387
>AF098985-5|AAC67418.1| 99|Caenorhabditis elegans Hypothetical
protein C08G5.5 protein.
Length = 99
Score = 29.9 bits (64), Expect = 3.9
Identities = 15/51 (29%), Positives = 19/51 (37%)
Frame = +1
Query: 634 PKGPPPXKKXXKXPPXSKXEKPXGTIXXPXXPPXKXPGGPPXTXPAXYRXP 786
P G PP P + + P + P PP P PP A Y+ P
Sbjct: 44 PSGLPPMVSESYSAPYA--QAPPTSTGYPSAPPMPRPSSPPPAYSAIYKPP 92
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 29.5 bits (63), Expect = 5.1
Identities = 16/51 (31%), Positives = 17/51 (33%)
Frame = +1
Query: 634 PKGPPPXKKXXKXPPXSKXEKPXGTIXXPXXPPXKXPGGPPXTXPAXYRXP 786
P GPPP PP P + PP G PP P Y P
Sbjct: 130 PSGPPPPSMAYGMPPMPSGMMPPRGMPGAYPPPR---GYPPAPAPGVYMPP 177
Score = 28.7 bits (61), Expect = 9.0
Identities = 18/60 (30%), Positives = 21/60 (35%)
Frame = -3
Query: 923 GXGAPXXSPGGXPPPPXWXPPPSXXXXTPPLXXXKAPLXPXGKRRTGXR*XAGXVXGGPP 744
G P PG PPP + P P+ PP A P + G G GPP
Sbjct: 148 GMMPPRGMPGAYPPPRGYPPAPAPGVYMPPPGMPGA--YPPPRMPIGHGPPGGPPMPGPP 205
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 29.5 bits (63), Expect = 5.1
Identities = 16/51 (31%), Positives = 17/51 (33%)
Frame = +1
Query: 634 PKGPPPXKKXXKXPPXSKXEKPXGTIXXPXXPPXKXPGGPPXTXPAXYRXP 786
P GPPP PP P + PP G PP P Y P
Sbjct: 130 PSGPPPPSMAYGMPPMPSGMMPPRGMPGAYPPPR---GYPPAPAPGVYMPP 177
Score = 28.7 bits (61), Expect = 9.0
Identities = 18/60 (30%), Positives = 21/60 (35%)
Frame = -3
Query: 923 GXGAPXXSPGGXPPPPXWXPPPSXXXXTPPLXXXKAPLXPXGKRRTGXR*XAGXVXGGPP 744
G P PG PPP + P P+ PP A P + G G GPP
Sbjct: 148 GMMPPRGMPGAYPPPRGYPPAPAPGVYMPPPGMPGA--YPPPRMPIGHGPPGGPPMPGPP 205
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.5 bits (63), Expect = 5.1
Identities = 15/53 (28%), Positives = 19/53 (35%)
Frame = +1
Query: 643 PPPXKKXXKXPPXSKXEKPXGTIXXPXXPPXKXPGGPPXTXPAXYRXPVRLXP 801
PPP + + S P + P P PP T P+ R P R P
Sbjct: 124 PPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPP 176
Score = 29.1 bits (62), Expect = 6.8
Identities = 18/57 (31%), Positives = 22/57 (38%)
Frame = +1
Query: 616 RVXXXXPKGPPPXKKXXKXPPXSKXEKPXGTIXXPXXPPXKXPGGPPXTXPAXYRXP 786
RV P PP ++ PP S +P P PP P PP T P+ P
Sbjct: 145 RVPRTPPPRSPPPRRPPMTPP-SPQRRP------PRTPPSPEPRNPPRTPPSPIPPP 194
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.1 bits (62), Expect = 6.8
Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Frame = -3
Query: 911 PXXSPGGXPPPPXW------XPPPSXXXXTPPLXXXKAPLXP 804
P PGG PPPP PPP PP AP P
Sbjct: 76 PPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPP 117
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical
protein Y49E10.10 protein.
Length = 425
Score = 28.7 bits (61), Expect = 9.0
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -3
Query: 914 APXXSPGGXPPPPXWXPPPSXXXXTPPLXXXKAPLXP 804
AP PPPP PP PP KAP P
Sbjct: 174 APPPPTTKAPPPPTTKAPPPPTTKAPPPPTTKAPPPP 210
Score = 28.7 bits (61), Expect = 9.0
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -3
Query: 887 PPPPXWXPPPSXXXXTPPLXXXKAPLXPXGK 795
PPPP PP PP KAP P K
Sbjct: 175 PPPPTTKAPPPPTTKAPPPPTTKAPPPPTTK 205
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,617,611
Number of Sequences: 27780
Number of extensions: 227501
Number of successful extensions: 1130
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3432936682
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -