Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_I16
         (1173 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    30   0.54 
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.71 
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    27   3.8  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   5.0  

>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 30.3 bits (65), Expect = 0.54
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = -2

Query: 557 RTKGFFDSSLSLVRLLRGYRNGESTFKISSKSVEVMIFS 441
           +T+G F S + L  LL+ Y NG  T+K S K+V V++ S
Sbjct: 678 QTEGTFTSKVILTDLLKCYSNG--TYKASFKNVHVVLRS 714


>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 29.9 bits (64), Expect = 0.71
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
 Frame = -2

Query: 479 KISSKSVEVMIF---SKLSKLLSG*VNSIYFNYFCKYIFRINSSNFFRTNGKKSFIIRVP 309
           KI+SK   V +    ++ S LLSG  +++ F  F KYI  +N   +    G  S+  R+ 
Sbjct: 54  KINSKGFTVYVLDATTRRSALLSGKHDTMIFTLFVKYITSLNHPEYLLLGG-YSYGARIS 112

Query: 308 IKFKIWILVERPLT 267
           +   I + +++ ++
Sbjct: 113 MHKSITLAIDKRIS 126


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +3

Query: 375 NIFTKVVKINRINSPREQLAEFRKDHY---FDRFRGDFE 482
           N F K   + RI S    ++EF+K  Y   FD F+  F+
Sbjct: 163 NFFKKYRSVERIASLSRSISEFQKSFYEQVFDTFQSQFK 201


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = +3

Query: 327 TFLPIGSKEIGTVYPKNIFTKVVKINRINSPREQLAEFRKDHYFDRFRGDFEST 488
           ++  I  + +  + PK+I  K++K ++ +   E L +  K   FD+   + E T
Sbjct: 601 SYFNIVKRTLADMVPKSISLKMIKYSKEHIQHELLEQLYKSQAFDKLLQESEVT 654


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,450,664
Number of Sequences: 5004
Number of extensions: 60482
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 629529512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)