Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_I14
         (1162 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    23   3.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   6.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   9.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   9.0  

>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 23.4 bits (48), Expect = 3.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 74  LCFGTRSISLFFSNHAVKSQSNNANGS 154
           LC   R I ++F N  +K +  NA  +
Sbjct: 45  LCLTERQIKIWFQNRRMKWKKENARAT 71


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 705 DPQWQNQIEKDLQDA 749
           + +W+N+ E D QDA
Sbjct: 343 EEEWENENESDYQDA 357


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +3

Query: 522 RKVKAKTIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 632
           +K  A+ +V   +       + A    N  +PF WLA
Sbjct: 193 KKANARAVVLFTRAEDARGILEAARRSNLSQPFQWLA 229


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +3

Query: 522 RKVKAKTIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 632
           +K  A+ +V   +       + A    N  +PF WLA
Sbjct: 283 KKANARAVVLFTRAEDARGILEAARRSNLSQPFQWLA 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 294,994
Number of Sequences: 438
Number of extensions: 6754
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 39403827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)