Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_I13
(1205 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 94 3e-20
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 64 4e-11
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 63 6e-11
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 58 2e-09
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 54 5e-08
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 42 2e-04
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 40 7e-04
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 38 0.004
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 35 0.026
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 32 0.14
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 31 0.32
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 29 1.3
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 28 2.3
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 28 3.0
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|... 27 3.9
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 27 3.9
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 27 5.2
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 27 5.2
SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 27 6.9
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 94.3 bits (224), Expect = 3e-20
Identities = 49/109 (44%), Positives = 67/109 (61%), Gaps = 5/109 (4%)
Frame = +1
Query: 580 GHFGQTHHIRLDLKLIADIGLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVM-- 753
G G+ I L+LK I +IGLVG PNAGKS+LL ++ +K ++ Y FTTI P G +
Sbjct: 221 GLTGEQKLIELELKTICEIGLVGLPNAGKSTLLNCLTASKSKVGEYEFTTIYPKIGTIKT 280
Query: 754 VYADKR---QISIADLPGLIEGAHVNIGLGHTFLKHVERTKXLLFIADV 891
D Q +AD+PG+I+GA GLG+ FL+HVER K L + D+
Sbjct: 281 TMPDDHSSFQYRLADIPGIIKGASDGKGLGYDFLRHVERAKMLCLVIDI 329
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 64.1 bits (149), Expect = 4e-11
Identities = 34/87 (39%), Positives = 49/87 (56%)
Frame = +1
Query: 628 ADIGLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVMVYADKRQISIADLPGLIE 807
A + +GFP+ GKS+LL AI++ K A+Y FTT+ GV+ Y D +I + DLPG+IE
Sbjct: 63 ARVAFIGFPSVGKSTLLSAITKTKSATASYEFTTLTAIPGVLEY-DGAEIQMLDLPGIIE 121
Query: 808 GAHVNIGLGHTFLKHVERTKXLLFIAD 888
GA G G + +L + D
Sbjct: 122 GASQGRG-GRQAVSAARTADLILMVLD 147
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 63.3 bits (147), Expect = 6e-11
Identities = 35/86 (40%), Positives = 50/86 (58%)
Frame = +1
Query: 625 IADIGLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVMVYADKRQISIADLPGLI 804
I +G +GFP+ GKS+L+ ++ + A Y FTT+ GV+ Y + +I I DLPG+I
Sbjct: 63 IGTVGFIGFPSVGKSTLMTQLTGTRSEAAAYEFTTLTTVPGVLQY-NGAKIQILDLPGII 121
Query: 805 EGAHVNIGLGHTFLKHVERTKXLLFI 882
EGA G G + V RT L+FI
Sbjct: 122 EGAKDGRGRGKQVIT-VARTCNLIFI 146
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 58.0 bits (134), Expect = 2e-09
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 25/113 (22%)
Frame = +1
Query: 634 IGLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGV-------------------MV 756
IG VG P++GKS++L A++ A + N+PFTTI+PN+ + +
Sbjct: 7 IGFVGKPSSGKSTMLNALTDATAKTGNFPFTTIEPNRAIGYAQIECACSRFGLQDKCKPI 66
Query: 757 YADKRQ------ISIADLPGLIEGAHVNIGLGHTFLKHVERTKXLLFIADVKG 897
Y + I + D+ GLI GAH GLG+ FL + L+ + DV G
Sbjct: 67 YGGCKNGVRSIPIQLLDVAGLIPGAHAGKGLGNKFLDDLRHADALVHVVDVSG 119
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 53.6 bits (123), Expect = 5e-08
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 17/90 (18%)
Frame = +1
Query: 637 GLVGFPNAGKSSLLKAISRA-KPRIANYPFTTIKPNKGVMVYADKR-------------- 771
G+VG PN GKS+ +AI+++ ANYP+ TI P + + D+R
Sbjct: 24 GIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRV 83
Query: 772 --QISIADLPGLIEGAHVNIGLGHTFLKHV 855
+++ D+ GL +GA +GLG+ FL HV
Sbjct: 84 PAFLTVFDIAGLTKGASTGVGLGNAFLSHV 113
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 41.9 bits (94), Expect = 2e-04
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 17/97 (17%)
Frame = +1
Query: 634 IGLVGFPNAGKSSLLKAISRAK-PRIANYPFTTIKP---NKGVM---------VYADK-- 768
IG+VG PN GKS+L + +++ ANYPF TI P V+ +Y K
Sbjct: 48 IGIVGMPNIGKSTLFQILTKTNLGNPANYPFATIDPVHAKAPVLDSQYELLCEIYQPKTR 107
Query: 769 --RQISIADLPGLIEGAHVNIGLGHTFLKHVERTKXL 873
Q++I D GL + GLG+ FL ++ L
Sbjct: 108 IPAQLTIYDTAGLTRNSSKGEGLGNAFLSNIRSVDAL 144
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 39.9 bits (89), Expect = 7e-04
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Frame = +1
Query: 646 GFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVMVYADKRQISIADLPGLIEGAHVNI 825
G+PN GKSS + ++RA+ + Y FTT G Y R + D PG+++ +
Sbjct: 175 GYPNVGKSSFMNKVTRAQVDVQPYAFTTKSLFVGHFDYKYLRW-QVIDTPGILDHPLEQM 233
Query: 826 GL----GHTFLKHVERTKXLLF--IADVKGFS*ALNIQIVHAXK 939
T + H+ R+ L F ++++ G+S A +++ H+ K
Sbjct: 234 NTIEMQSITAMAHL-RSAVLYFMDLSEMCGYSVAAQVKLYHSIK 276
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 37.5 bits (83), Expect = 0.004
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +1
Query: 613 DLKLIADIGLVGFPNAGKSSLLKAISRAKP-RIANYPFTTIKPNKGVMVYADKRQISIAD 789
D K I+ +GL+GFPNAGKSS++ + + K +A P T K A ++I + D
Sbjct: 307 DKKQIS-VGLIGFPNAGKSSIINTLRKKKVCNVAPIPGET----KVWQYVALMKRIFLID 361
Query: 790 LPGLI 804
PG++
Sbjct: 362 CPGIV 366
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 34.7 bits (76), Expect = 0.026
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 613 DLKLIADIGLVGFPNAGKSSLLKA-ISRAKPRIANYPFTTIKPNKGVMVYADKRQISIAD 789
D K GLVG+PN GKSS + A + K +++ P T K ++S+ D
Sbjct: 297 DGKTKMTFGLVGYPNVGKSSTINALVGSKKVSVSSTPGKT----KHFQTINLSEKVSLLD 352
Query: 790 LPGLI 804
PGL+
Sbjct: 353 CPGLV 357
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 32.3 bits (70), Expect = 0.14
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Frame = +1
Query: 643 VGFPNAGKSSLLKAISRAKPR------IANYPFTTIKPNKGVMVYADKRQISIADLPGLI 804
VG PN GKSS+L ++ R + NYP T + ++ V ++ D + + D PG++
Sbjct: 151 VGMPNTGKSSILNSLRNVALRKSKSAIVGNYPGVTKRISEIVRLFND-MDVYMLDTPGIM 209
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 31.1 bits (67), Expect = 0.32
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +1
Query: 592 QTHHIRLDLKLIADIGLVGFPNAGKSSLLKAI 687
+++ + LK +G++G+PN GKSS++ A+
Sbjct: 258 KSYSAKKKLKSSLTVGVIGYPNVGKSSVINAL 289
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +1
Query: 631 DIGLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVMVYADKRQISIADLPGLIEG 810
++ ++G NAGKSSL+ ++ + I + T + V+V + + ++D GL +G
Sbjct: 241 NVAILGPSNAGKSSLINLLANRRISIVSPQSGTTRDAIEVLVDINGFPVLLSDTAGLRKG 300
Query: 811 AHV 819
V
Sbjct: 301 EDV 303
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +1
Query: 598 HHIRLDLKLIADIGLVGFPNAGKSSLLKAISRAKPR----IANYPFTTIKPN 741
+++ L ++ + +VG +GKS+L++ + + P I YP T I N
Sbjct: 1119 NNVSLSIEAREKVAIVGISGSGKSTLVELLRKTYPSEDIYIDGYPLTNIDTN 1170
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 27.9 bits (59), Expect = 3.0
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 601 HIRLDLKLIADIGLVGFPNAGKSSLLKAIS 690
H+ LDL + LVG AGKS+LLK +S
Sbjct: 22 HVTLDLPKGSRTLLVGANGAGKSTLLKLLS 51
>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 552
Score = 27.5 bits (58), Expect = 3.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 748 VMVYADKRQISIADLPGLIEGAHVN 822
+M+Y DK +S + + GL E H+N
Sbjct: 98 MMLYIDKATLSYSSILGLFEDTHIN 122
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 27.5 bits (58), Expect = 3.9
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +1
Query: 616 LKLIADIGLVGFPNAGKSSLLKAISRAKPRIANYPFTTIKPNKGVMVYADKRQISIADL 792
L+L I L G+P GK+ L AIS P F +IK + + Y K + + DL
Sbjct: 637 LRLPTGILLFGYPGCGKTYLASAISSTFP----VQFISIKGPELLDKYIGKSEQGVRDL 691
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 634 IGLVGFPNAGKSSLLKAIS-RAKPRIANY 717
+GLVG GKS+ LK +S + KP + Y
Sbjct: 106 LGLVGTNGIGKSTALKILSGKMKPNLGRY 134
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 27.1 bits (57), Expect = 5.2
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +1
Query: 595 THHIRLDLKLIADIGLVGFPNAGKSSLLKAISRAKPRIANYPF 723
TH RL KL + L G P GK+ L +A++ AN PF
Sbjct: 290 THFTRLGGKLPRGVLLTGPPGTGKTMLARAVAGE----ANVPF 328
>SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 199
Score = 26.6 bits (56), Expect = 6.9
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = -3
Query: 840 CVTQSNIHMSTFNQSW--QVRDRY 775
CV+ + H +T +QSW ++RDR+
Sbjct: 18 CVSHRSFHNTTVSQSWLSRIRDRF 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,832,829
Number of Sequences: 5004
Number of extensions: 69040
Number of successful extensions: 174
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 651443514
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -