Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_I12
         (1218 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DB6DAF Cluster: PREDICTED: similar to CG10955-PA...    92   3e-17
UniRef50_Q9W261 Cluster: RNA polymerase-associated protein Rtf1;...    73   2e-11
UniRef50_Q28XT6 Cluster: GA10665-PA; n=1; Drosophila pseudoobscu...    71   5e-11
UniRef50_Q92541 Cluster: RNA polymerase-associated protein RTF1 ...    71   8e-11
UniRef50_UPI00005845E4 Cluster: PREDICTED: similar to Rtf1, Paf1...    64   5e-09
UniRef50_Q6INV7 Cluster: LOC432204 protein; n=4; Tetrapoda|Rep: ...    57   8e-07
UniRef50_A4SAP2 Cluster: Predicted protein; n=2; Ostreococcus|Re...    44   0.008
UniRef50_P90845 Cluster: Putative uncharacterized protein; n=2; ...    44   0.011
UniRef50_Q54LP1 Cluster: Putative uncharacterized protein; n=1; ...    42   0.043
UniRef50_UPI00006CB905 Cluster: hypothetical protein TTHERM_0072...    36   1.6  
UniRef50_A2D894 Cluster: Putative uncharacterized protein; n=1; ...    35   3.7  
UniRef50_Q9U209 Cluster: Putative uncharacterized protein; n=2; ...    34   8.6  
UniRef50_Q4PDS6 Cluster: Putative uncharacterized protein; n=1; ...    34   8.6  

>UniRef50_UPI0000DB6DAF Cluster: PREDICTED: similar to CG10955-PA;
           n=3; Endopterygota|Rep: PREDICTED: similar to CG10955-PA
           - Apis mellifera
          Length = 692

 Score = 91.9 bits (218), Expect = 3e-17
 Identities = 48/91 (52%), Positives = 59/91 (64%)
 Frame = +3

Query: 408 KRSETRKSIESAGSEKKKDTFSEPEEGXXXXXXXXXXXXXXXXXXXXGYDENLMGDEEDR 587
           KR  T+ S E + SEK+ +  SEPEEG                    GYD+ LMGD ED+
Sbjct: 88  KRKMTKSSSEESASEKEPEKVSEPEEGEVSDSDASVSDSSQEEFND-GYDDKLMGDAEDQ 146

Query: 588 ARLAAMSEKEREQEIFKRIERRDLMKTRWEI 680
           ARLA M+EKEREQEIFKRIE+R++MKTR+EI
Sbjct: 147 ARLAQMTEKEREQEIFKRIEQREIMKTRFEI 177


>UniRef50_Q9W261 Cluster: RNA polymerase-associated protein Rtf1;
           n=4; Coelomata|Rep: RNA polymerase-associated protein
           Rtf1 - Drosophila melanogaster (Fruit fly)
          Length = 775

 Score = 72.9 bits (171), Expect = 2e-11
 Identities = 30/44 (68%), Positives = 40/44 (90%)
 Frame = +3

Query: 549 GYDENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWEI 680
           G+D++LMGD+EDR RL  +SEKERE EI+KRIE+R++M+TRWEI
Sbjct: 159 GFDDDLMGDDEDRRRLNGLSEKERETEIYKRIEQREIMRTRWEI 202


>UniRef50_Q28XT6 Cluster: GA10665-PA; n=1; Drosophila
           pseudoobscura|Rep: GA10665-PA - Drosophila pseudoobscura
           (Fruit fly)
          Length = 764

 Score = 71.3 bits (167), Expect = 5e-11
 Identities = 30/44 (68%), Positives = 39/44 (88%)
 Frame = +3

Query: 549 GYDENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWEI 680
           G+D+++MGDEEDR RL  +SEKERE EIFKRIE+R++ +TRWEI
Sbjct: 153 GFDDDMMGDEEDRKRLNDLSEKERETEIFKRIEQREIRRTRWEI 196


>UniRef50_Q92541 Cluster: RNA polymerase-associated protein RTF1
           homolog; n=40; Eumetazoa|Rep: RNA polymerase-associated
           protein RTF1 homolog - Homo sapiens (Human)
          Length = 670

 Score = 70.5 bits (165), Expect = 8e-11
 Identities = 31/44 (70%), Positives = 39/44 (88%)
 Frame = +3

Query: 549 GYDENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWEI 680
           GY E+LMGDEEDRARL  M+EKEREQE+F RIE+R+++K R+EI
Sbjct: 141 GYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKREVLKRRFEI 184


>UniRef50_UPI00005845E4 Cluster: PREDICTED: similar to Rtf1,
           Paf1/RNA polymerase II complex component, homolog (S.
           cerevisiae); n=2; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to Rtf1, Paf1/RNA polymerase II
           complex component, homolog (S. cerevisiae) -
           Strongylocentrotus purpuratus
          Length = 690

 Score = 64.5 bits (150), Expect = 5e-09
 Identities = 34/92 (36%), Positives = 46/92 (50%)
 Frame = +3

Query: 405 PKRSETRKSIESAGSEKKKDTFSEPEEGXXXXXXXXXXXXXXXXXXXXGYDENLMGDEED 584
           PK+   R + + +G     D  S  E                      GYDEN +GDEED
Sbjct: 79  PKKKVARSASDGSGVISDSDKSSLEEGEVSDSESDDSDSGSDDEKFFDGYDENFIGDEED 138

Query: 585 RARLAAMSEKEREQEIFKRIERRDLMKTRWEI 680
           +  L  M+EKEREQ I+ R E+RD ++TR+EI
Sbjct: 139 KEMLEKMTEKEREQVIYNRSEKRDALRTRYEI 170


>UniRef50_Q6INV7 Cluster: LOC432204 protein; n=4; Tetrapoda|Rep:
           LOC432204 protein - Xenopus laevis (African clawed frog)
          Length = 609

 Score = 57.2 bits (132), Expect = 8e-07
 Identities = 25/36 (69%), Positives = 32/36 (88%)
 Frame = +3

Query: 573 DEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWEI 680
           DEEDRARL  M+EKEREQE+F RIE+R+++K R+EI
Sbjct: 556 DEEDRARLEQMTEKEREQELFNRIEKREVLKRRFEI 591


>UniRef50_A4SAP2 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
           Predicted protein - Ostreococcus lucimarinus CCE9901
          Length = 576

 Score = 44.0 bits (99), Expect = 0.008
 Identities = 19/41 (46%), Positives = 30/41 (73%)
 Frame = +3

Query: 549 GYDENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTR 671
           GY  +LMGD  DRARLA+++E ERE+ + +R + R  +++R
Sbjct: 34  GYGSDLMGDAADRARLASLNELEREEIMLERADARKRLESR 74


>UniRef50_P90845 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 613

 Score = 43.6 bits (98), Expect = 0.011
 Identities = 20/42 (47%), Positives = 30/42 (71%)
 Frame = +3

Query: 555 DENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWEI 680
           D++L  D+ED+AR   ++E E+EQEIF+R+E R+    R EI
Sbjct: 78  DDDLFADKEDKARWKKLTELEKEQEIFERMEARENAIAREEI 119


>UniRef50_Q54LP1 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 627

 Score = 41.5 bits (93), Expect = 0.043
 Identities = 25/103 (24%), Positives = 40/103 (38%)
 Frame = +3

Query: 366 KRASSDEXSKETEPKRSETRKSIESAGSEKKKDTFSEPEEGXXXXXXXXXXXXXXXXXXX 545
           KR  S+E S E   +    +K     G +K   +  +                       
Sbjct: 27  KRIKSNESSDEDFEENKNKKKKTSGPGRKKGSTSMQQSTINYGSSRRNRGASIENDDDFN 86

Query: 546 XGYDENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTRW 674
            GYDE+L  D+ DR  L+ + E +RE  + +R E+R   +  W
Sbjct: 87  DGYDEDLYKDDNDRYELSLLPEIDRENILSERYEKRKEARELW 129


>UniRef50_UPI00006CB905 Cluster: hypothetical protein
           TTHERM_00729160; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00729160 - Tetrahymena
           thermophila SB210
          Length = 481

 Score = 36.3 bits (80), Expect = 1.6
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = +3

Query: 549 GYDENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMK 665
           GYD +   DEEDR +L  M+E +R  E+ +R+E R+  K
Sbjct: 35  GYDTDGYKDEEDRKKLNQMNEVDRVNELNRRLEERNNKK 73


>UniRef50_A2D894 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 473

 Score = 35.1 bits (77), Expect = 3.7
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 549 GYDENLMGDEEDRARLAAMSEKEREQEIFKRIERR-DLMK 665
           GYDE+   D+ D   L  MS+  RE+E   R +RR +LMK
Sbjct: 61  GYDEDFYHDDADEVALDQMSQLYREEEKMNRADRREELMK 100


>UniRef50_Q9U209 Cluster: Putative uncharacterized protein; n=2;
            Caenorhabditis elegans|Rep: Putative uncharacterized
            protein - Caenorhabditis elegans
          Length = 1342

 Score = 33.9 bits (74), Expect = 8.6
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +3

Query: 375  SSDEXSKETEPKRSETRKSIESAGSEKK 458
            SSDE  KE EP  S T+K  + AG+E+K
Sbjct: 966  SSDESDKEEEPSCSNTKKQAKMAGNERK 993


>UniRef50_Q4PDS6 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 624

 Score = 33.9 bits (74), Expect = 8.6
 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
 Frame = -1

Query: 588 LYPLHLPLNFHH--THHQIPLQSQLSHCLTNVKILHLPLVH*KYLFSSPIQHFQCSSWFQ 415
           L  LHL  +F    +HH I   S L+    + K+L L      Y FSSP  H   +SW  
Sbjct: 310 LQHLHLLPSFLRPLSHHAIFYPSSLTFTTVSGKVLRLASA--SYPFSSPTSHAASASWLP 367

Query: 414 IS---LALSLSTLHLRKPASEAS 355
            +   L   +S++ L   AS AS
Sbjct: 368 STSSRLLARISSIFLSSSASSAS 390


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 676,860,290
Number of Sequences: 1657284
Number of extensions: 9461259
Number of successful extensions: 30423
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 28330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30290
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 123197995029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)