Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_I12
         (1218 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    33   0.061
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    30   0.57 
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    27   4.0  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    27   4.0  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    26   9.2  

>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 33.5 bits (73), Expect = 0.061
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +3

Query: 558 ENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWEI 680
           E    DE DRA++ AM+E ERE  +F+R E    +  R E+
Sbjct: 77  EGKFKDEADRAKIMAMTEIERESILFEREEEISKLMERREL 117


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 30.3 bits (65), Expect = 0.57
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 573 DEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWE 677
           DE  R ++  + +KER++E F   ERRD  + +W+
Sbjct: 308 DESRRKKIELLEKKERDEEQFLEKERRDTAR-KWD 341


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -1

Query: 429 SSWFQISLALSLSTLHLRKPASEASLCXWMHCFWRHCLNQNQTMML 292
           S  FQ  LA S+S++H +   +E +LC W + ++   ++QN   +L
Sbjct: 505 SPLFQ-QLARSISSMHFQ--VAERALCLWSNEYFTSLVSQNVVTLL 547


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 325 TPKAMHPXAKTRLRSGLPQMKXRKRQSQRDLKP 423
           TP+ MHP +    +   P+ K RKR  +  L P
Sbjct: 100 TPRPMHPISHPLSQHKTPEFKHRKRNVESILTP 132


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/67 (17%), Positives = 32/67 (47%)
 Frame = -1

Query: 594 DELYPLHLPLNFHHTHHQIPLQSQLSHCLTNVKILHLPLVH*KYLFSSPIQHFQCSSWFQ 415
           +EL+P+ + +    ++ Q  L+  +   +  +  +HLP    ++ + + + + Q  +W  
Sbjct: 216 EELFPVGVGVTTFESNTQYLLRFMIDCDVVGMNWIHLPASKYQFRYQNRVSNCQIEAWIN 275

Query: 414 ISLALSL 394
               +SL
Sbjct: 276 YKDLISL 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,883
Number of Sequences: 5004
Number of extensions: 40042
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 659412242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)