Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_I12
         (1218 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D87440-1|BAA13382.2|  702|Homo sapiens KIAA0252 protein.               71   1e-11
BC015052-1|AAH15052.1|  585|Homo sapiens Rtf1, Paf1/RNA polymera...    71   1e-11

>D87440-1|BAA13382.2|  702|Homo sapiens KIAA0252 protein.
          Length = 702

 Score = 70.5 bits (165), Expect = 1e-11
 Identities = 31/44 (70%), Positives = 39/44 (88%)
 Frame = +3

Query: 549 GYDENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWEI 680
           GY E+LMGDEEDRARL  M+EKEREQE+F RIE+R+++K R+EI
Sbjct: 173 GYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKREVLKRRFEI 216


>BC015052-1|AAH15052.1|  585|Homo sapiens Rtf1, Paf1/RNA polymerase
           II complex component, homolog (S. cerevisiae) protein.
          Length = 585

 Score = 70.5 bits (165), Expect = 1e-11
 Identities = 31/44 (70%), Positives = 39/44 (88%)
 Frame = +3

Query: 549 GYDENLMGDEEDRARLAAMSEKEREQEIFKRIERRDLMKTRWEI 680
           GY E+LMGDEEDRARL  M+EKEREQE+F RIE+R+++K R+EI
Sbjct: 56  GYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKREVLKRRFEI 99


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,407,838
Number of Sequences: 237096
Number of extensions: 1476395
Number of successful extensions: 8606
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8592
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 17229469990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)