Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_I11
         (1244 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   202   6e-53
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   201   2e-52
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    41   3e-04
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   5.4  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  202 bits (494), Expect = 6e-53
 Identities = 95/150 (63%), Positives = 113/150 (75%)
 Frame = +1

Query: 181 GASGLRNKRXVWRVKSTXXXXXXXXXXXXXXEXQAPKRLFEGNALLRRLVRIGVLDXKQL 360
           G  GLRNK  +WRV  T              + + PKRLFEGNA++RRLVR+G+LD  ++
Sbjct: 32  GEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLVRLGILDESRM 91

Query: 361 XLDYVLGLKLEDFLERRLQXQVFKAGLAKSIHHAXILIRQRHIRVRKQVVNIPSFIVRLD 540
            LDYVL L++EDFLERRLQ QVFK GLAKSIHHA +LI QRHIRV KQ+VN+PSF+VRLD
Sbjct: 92  KLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLD 151

Query: 541 SGKHIDFSLKSPFGGGRPGRVKRKNLRKGQ 630
           + KHIDF+L SP+GGGRPGR KRK LR  Q
Sbjct: 152 AQKHIDFALSSPYGGGRPGRCKRKRLRSQQ 181


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  201 bits (490), Expect = 2e-52
 Identities = 94/147 (63%), Positives = 112/147 (76%)
 Frame = +1

Query: 181 GASGLRNKRXVWRVKSTXXXXXXXXXXXXXXEXQAPKRLFEGNALLRRLVRIGVLDXKQL 360
           G  GLRNK  +WRV  T              + + PKRLFEGNA++RRLVR+G+LD  ++
Sbjct: 32  GEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLVRLGILDETRM 91

Query: 361 XLDYVLGLKLEDFLERRLQXQVFKAGLAKSIHHAXILIRQRHIRVRKQVVNIPSFIVRLD 540
            LDYVL L++EDFLERRLQ QVFK GLAKSIHHA +LI QRHIRV KQ+VN+PSF+VRLD
Sbjct: 92  KLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLD 151

Query: 541 SGKHIDFSLKSPFGGGRPGRVKRKNLR 621
           + KHIDF+L SP+GGGRPGR KRK LR
Sbjct: 152 TQKHIDFALSSPYGGGRPGRCKRKRLR 178


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 25/82 (30%), Positives = 39/82 (47%)
 Frame = +1

Query: 286 PKRLFEGNALLRRLVRIGVLDXKQLXLDYVLGLKLEDFLERRLQXQVFKAGLAKSIHHAX 465
           P RL   N LL +L  +G+L  K    D      +     RRL   + K  +++ +  A 
Sbjct: 69  PFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEAT 128

Query: 466 ILIRQRHIRVRKQVVNIPSFIV 531
            LI Q H+RV   V+  P+++V
Sbjct: 129 RLIEQGHVRVGPHVITDPAYLV 150


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -3

Query: 474 DQNXGMMDGLRQASFEHLRLQTTLQEVLKLQTKHIIEXQLF---XIQYSNTNQT 322
           D N    D L+  +++H  L+ ++ E+ K++  H    QLF    + Y N  +T
Sbjct: 825 DTNTKSFDTLKTLNYKHAILKKSMGELYKMEMIHECPRQLFGQILVVYLNRERT 878


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,079,688
Number of Sequences: 5004
Number of extensions: 34368
Number of successful extensions: 60
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 677341880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)