Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_I11
(1244 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 180 2e-45
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 180 2e-45
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 180 2e-45
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 84 2e-16
07_03_1357 - 25982861-25983068,25983354-25983361 61 2e-09
04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028 31 2.5
02_05_1008 - 33461225-33462334 29 5.8
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 180 bits (439), Expect = 2e-45
Identities = 89/149 (59%), Positives = 108/149 (72%)
Frame = +1
Query: 178 IGASGLRNKRXVWRVKSTXXXXXXXXXXXXXXEXQAPKRLFEGNALLRRLVRIGVLDXKQ 357
+G GLR KR +WRV+ + + P+R+FEG ALLRR+ R G+L Q
Sbjct: 33 VGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRRIFEGEALLRRMNRYGLLADGQ 92
Query: 358 LXLDYVLGLKLEDFLERRLQXQVFKAGLAKSIHHAXILIRQRHIRVRKQVVNIPSFIVRL 537
LDYVL L +E+FL RRLQ VFKAG+AKSIHHA +LIRQRHIRV +Q+VNIPSF+VR+
Sbjct: 93 NKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRV 152
Query: 538 DSGKHIDFSLKSPFGGGRPGRVKRKNLRK 624
+S KHIDFSL SPFGGG PGRVKRKN +K
Sbjct: 153 ESEKHIDFSLTSPFGGGPPGRVKRKNQKK 181
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 180 bits (439), Expect = 2e-45
Identities = 89/149 (59%), Positives = 108/149 (72%)
Frame = +1
Query: 178 IGASGLRNKRXVWRVKSTXXXXXXXXXXXXXXEXQAPKRLFEGNALLRRLVRIGVLDXKQ 357
+G GLR KR +WRV+ + + P+R+FEG ALLRR+ R G+L Q
Sbjct: 56 VGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRRIFEGEALLRRMNRYGLLADGQ 115
Query: 358 LXLDYVLGLKLEDFLERRLQXQVFKAGLAKSIHHAXILIRQRHIRVRKQVVNIPSFIVRL 537
LDYVL L +E+FL RRLQ VFKAG+AKSIHHA +LIRQRHIRV +Q+VNIPSF+VR+
Sbjct: 116 NKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRV 175
Query: 538 DSGKHIDFSLKSPFGGGRPGRVKRKNLRK 624
+S KHIDFSL SPFGGG PGRVKRKN +K
Sbjct: 176 ESEKHIDFSLTSPFGGGPPGRVKRKNQKK 204
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 180 bits (439), Expect = 2e-45
Identities = 89/149 (59%), Positives = 108/149 (72%)
Frame = +1
Query: 178 IGASGLRNKRXVWRVKSTXXXXXXXXXXXXXXEXQAPKRLFEGNALLRRLVRIGVLDXKQ 357
+G GLR KR +WRV+ + + P+R+FEG ALLRR+ R G+L Q
Sbjct: 249 VGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRRIFEGEALLRRMNRYGLLADGQ 308
Query: 358 LXLDYVLGLKLEDFLERRLQXQVFKAGLAKSIHHAXILIRQRHIRVRKQVVNIPSFIVRL 537
LDYVL L +E+FL RRLQ VFKAG+AKSIHHA +LIRQRHIRV +Q+VNIPSF+VR+
Sbjct: 309 NKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRV 368
Query: 538 DSGKHIDFSLKSPFGGGRPGRVKRKNLRK 624
+S KHIDFSL SPFGGG PGRVKRKN +K
Sbjct: 369 ESEKHIDFSLTSPFGGGPPGRVKRKNQKK 397
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 84.2 bits (199), Expect = 2e-16
Identities = 48/103 (46%), Positives = 61/103 (59%)
Frame = +1
Query: 181 GASGLRNKRXVWRVKSTXXXXXXXXXXXXXXEXQAPKRLFEGNALLRRLVRIGVLDXKQL 360
G GLR+K +WRV+ + + P+R+FEG ALLR + R G+L Q
Sbjct: 34 GEYGLRSKCELWRVQELLTL-----------DEKNPRRIFEGEALLRHMNRYGLLGEGQN 82
Query: 361 XLDYVLGLKLEDFLERRLQXQVFKAGLAKSIHHAXILIRQRHI 489
LDYVL L +E+FL+ RLQ VFK G KSIHH +LIRQ HI
Sbjct: 83 KLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHVLIRQHHI 125
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 61.3 bits (142), Expect = 2e-09
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = +1
Query: 490 RVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN 615
RV +Q+VNIPSFIVRL+S KHI FSL SP GG RVKRKN
Sbjct: 3 RVGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKN 44
>04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028
Length = 157
Score = 30.7 bits (66), Expect = 2.5
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 406 RRLQXQVFKAGLAKSIHHAXILIRQRHIRVRKQVVNIPSFIV 531
RRL + K A+ + A I+Q H+RV + V P+F+V
Sbjct: 82 RRLATVMVKLKFAEHLKEAVTYIQQGHVRVGPETVTDPAFLV 123
>02_05_1008 - 33461225-33462334
Length = 369
Score = 29.5 bits (63), Expect = 5.8
Identities = 24/79 (30%), Positives = 42/79 (53%)
Frame = +1
Query: 355 QLXLDYVLGLKLEDFLERRLQXQVFKAGLAKSIHHAXILIRQRHIRVRKQVVNIPSFIVR 534
Q+ L+Y+ G LE RR+ + F A +A+ + + +RHI V + + PS ++
Sbjct: 165 QILLEYMDGGSLEG---RRIASEAFLADVARQVLSGIAYLHRRHI-VHRDIK--PSNLL- 217
Query: 535 LDSGKHIDFSLKSPFGGGR 591
+DSG+ + + FG GR
Sbjct: 218 IDSGRRVKI---ADFGVGR 233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,124,820
Number of Sequences: 37544
Number of extensions: 279420
Number of successful extensions: 683
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3841085160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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