Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_I11
         (1244 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   221   6e-58
U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical pr...    34   0.18 
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    29   6.8  
AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical ...    29   6.8  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  221 bits (541), Expect = 6e-58
 Identities = 108/150 (72%), Positives = 121/150 (80%)
 Frame = +1

Query: 178 IGASGLRNKRXVWRVKSTXXXXXXXXXXXXXXEXQAPKRLFEGNALLRRLVRIGVLDXKQ 357
           IG  GL+NKR VWRVK T              E + PKRLFEGNALLRRLV+IGVLD  +
Sbjct: 31  IGTFGLKNKREVWRVKYTLAKVRKAARELLTLEDKDPKRLFEGNALLRRLVKIGVLDETK 90

Query: 358 LXLDYVLGLKLEDFLERRLQXQVFKAGLAKSIHHAXILIRQRHIRVRKQVVNIPSFIVRL 537
           + LDYVLGLK+EDFLERRLQ QVFK GLAKSIHHA ILI+Q HIRVR+QVV++PSFIVRL
Sbjct: 91  MKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHARILIKQHHIRVRRQVVDVPSFIVRL 150

Query: 538 DSGKHIDFSLKSPFGGGRPGRVKRKNLRKG 627
           DS KHIDFSL+SP+GGGRPGRVKR+ LRKG
Sbjct: 151 DSQKHIDFSLQSPYGGGRPGRVKRRTLRKG 180


>U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical
           protein C48B6.2 protein.
          Length = 183

 Score = 34.3 bits (75), Expect = 0.18
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +1

Query: 397 FLERRLQXQVFKAGLAKSIHHAXILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 573
           F  RRL   +   G+ +S+  A  L+ Q H+R+  ++V  P+F+V   S   I ++  S
Sbjct: 105 FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKAS 163


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 517 GCSQLACGHEYAFAGSKXWH 458
           GC +L   +EY FA  K WH
Sbjct: 339 GCDELIFANEYTFAEEKSWH 358


>AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical
           protein Y49F6B.9 protein.
          Length = 382

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 514 CSQLACGHEYAFAGSKXWHDG 452
           C +  CG E+ F   K WH+G
Sbjct: 152 CQRPGCGREFCFKCRKVWHEG 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,978,269
Number of Sequences: 27780
Number of extensions: 213783
Number of successful extensions: 477
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3453805598
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)