Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_I06
         (1223 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P22087 Cluster: rRNA 2'-O-methyltransferase fibrillarin...    36   1.6  
UniRef50_Q8H776 Cluster: Putative uncharacterized protein; n=1; ...    36   2.8  
UniRef50_UPI0000DA1F29 Cluster: PREDICTED: hypothetical protein;...    34   6.5  
UniRef50_Q474L6 Cluster: Putative type 4 fimbrial biogenesis pro...    34   8.6  

>UniRef50_P22087 Cluster: rRNA 2'-O-methyltransferase fibrillarin;
           n=162; cellular organisms|Rep: rRNA
           2'-O-methyltransferase fibrillarin - Homo sapiens
           (Human)
          Length = 321

 Score = 36.3 bits (80), Expect = 1.6
 Identities = 17/35 (48%), Positives = 17/35 (48%)
 Frame = +1

Query: 379 GXGGXGGXXGGGXGGXXRGXGHLGXXAXXGXXGKR 483
           G GG GG  GGG GG   G  H G     G  GKR
Sbjct: 44  GRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGKR 78


>UniRef50_Q8H776 Cluster: Putative uncharacterized protein; n=1;
           Arabidopsis thaliana|Rep: Putative uncharacterized
           protein - Arabidopsis thaliana (Mouse-ear cress)
          Length = 163

 Score = 35.5 bits (78), Expect = 2.8
 Identities = 16/33 (48%), Positives = 16/33 (48%)
 Frame = +1

Query: 379 GXGGXGGXXGGGXGGXXRGXGHLGXXAXXGXXG 477
           G GG GG  GGG GG   G GH G     G  G
Sbjct: 93  GLGGGGGAGGGGGGGIGGGSGHGGGFGAGGGVG 125


>UniRef50_UPI0000DA1F29 Cluster: PREDICTED: hypothetical protein;
           n=3; Rattus norvegicus|Rep: PREDICTED: hypothetical
           protein - Rattus norvegicus
          Length = 170

 Score = 34.3 bits (75), Expect = 6.5
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +1

Query: 379 GXGGXGGXXGGGXGGXXRGXGHLGXXAXXGXXGKR 483
           G GG GG  GGG GG   G G  G     G  G+R
Sbjct: 67  GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGRR 101


>UniRef50_Q474L6 Cluster: Putative type 4 fimbrial biogenesis protein
            PilY1; n=1; Ralstonia eutropha JMP134|Rep: Putative type
            4 fimbrial biogenesis protein PilY1 - Ralstonia eutropha
            (strain JMP134) (Alcaligenes eutrophus)
          Length = 1223

 Score = 33.9 bits (74), Expect = 8.6
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = +1

Query: 379  GXGGXGGXXGGGXGGXXRGXGHL 447
            G GG GG  GGG GG   G GHL
Sbjct: 1170 GGGGGGGGGGGGGGGGGGGGGHL 1192


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.313    0.142    0.461 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 390,614,765
Number of Sequences: 1657284
Number of extensions: 3659195
Number of successful extensions: 24380
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18418
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 124011183115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)