Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_I06
(1223 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0558 + 19461369-19462448 36 0.086
06_02_0175 - 12624608-12625297 32 1.1
10_08_0218 - 15967064-15967906 31 1.8
06_01_0178 + 1386981-1387505 31 1.8
02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623 31 1.8
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 5.6
07_03_1751 - 29215074-29216270 29 5.6
03_05_0690 + 26778567-26778804,26778950-26779024,26779995-267800... 29 5.6
12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232 29 7.4
06_03_1211 - 28448429-28449295,28449825-28449860,28451010-284511... 29 7.4
03_02_0765 + 11000724-11002496 29 9.8
>07_03_0558 + 19461369-19462448
Length = 359
Score = 35.5 bits (78), Expect = 0.086
Identities = 16/33 (48%), Positives = 16/33 (48%)
Frame = +1
Query: 379 GXGGXGGXXGGGXGGXXRGXGHLGXXAXXGXXG 477
G GG GG GGG GG G GH G G G
Sbjct: 130 GLGGGGGFGGGGGGGLGGGGGHGGGFGAGGGVG 162
>06_02_0175 - 12624608-12625297
Length = 229
Score = 31.9 bits (69), Expect = 1.1
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +1
Query: 379 GXGGXGGXXGGGXGGXXRGXGHLGXXAXXGXXGKR 483
G GG G GGG GG G G G G G+R
Sbjct: 94 GGGGSSGGGGGGGGGGGGGGGGGGGGGGGGGGGRR 128
>10_08_0218 - 15967064-15967906
Length = 280
Score = 31.1 bits (67), Expect = 1.8
Identities = 18/50 (36%), Positives = 20/50 (40%)
Frame = +1
Query: 394 GGXXGGGXGGXXRGXGHLGXXAXXGXXGKRXPEXQXXQTGXXXXRGKXGK 543
GG GGG GG G GH G + G G P Q G G G+
Sbjct: 192 GGQGGGGGGGQYGGSGH-GSGSGYGQAGSYGPGGAYAQGGGQGGGGGGGQ 240
>06_01_0178 + 1386981-1387505
Length = 174
Score = 31.1 bits (67), Expect = 1.8
Identities = 19/61 (31%), Positives = 21/61 (34%)
Frame = +1
Query: 379 GXGGXGGXXGGGXGGXXRGXGHLGXXAXXGXXGKRXPEXQXXQTGXXXXRGKXGKXM*EK 558
G GG GG GG GG GH G G G + + G G G K
Sbjct: 45 GGGGGGGGGAGGKGGKGGAGGHGGAGGGGGGGGGKGRKGGAGGHGGAGGGGGGGGGKGRK 104
Query: 559 G 561
G
Sbjct: 105 G 105
>02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623
Length = 400
Score = 31.1 bits (67), Expect = 1.8
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +1
Query: 379 GXGGXGGXXGGGXGGXXRGXGHLGXXAXXG 468
G GG G GG GG G GH G A G
Sbjct: 273 GHGGAGAGAGGARGGAGAGGGHGGAGAGAG 302
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.5 bits (63), Expect = 5.6
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = -3
Query: 513 PXLPXLXFXXPFAPXPXXXXXX*MXXPPXXPPXPPPXXP 397
P P + + P P P PP PP PPP P
Sbjct: 83 PPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAP 121
>07_03_1751 - 29215074-29216270
Length = 398
Score = 29.5 bits (63), Expect = 5.6
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +1
Query: 379 GXGGXGGXXGGGXGGXXRGXGHLGXXAXXGXXG 477
G G GG GGG G G GH G G G
Sbjct: 216 GGGAGGGAGGGGGLGGGAGGGHGGGGGLGGGAG 248
>03_05_0690 +
26778567-26778804,26778950-26779024,26779995-26780099,
26780869-26781000,26781432-26781571,26782213-26782323,
26782690-26782812,26784166-26784267,26784536-26784546,
26784878-26785103,26785363-26785401,26785413-26785583,
26785674-26785753,26785976-26786039
Length = 538
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +1
Query: 379 GXGGXGGXXGGGXGGXXRGXGHLGXXAXXGXXGKRXPEXQXXQ 507
G GG GG GGG GG G G G+R + + Q
Sbjct: 16 GGGGGGGGGGGGGGGVGGDRGGGGSGGGGPGMGRRGSDARAQQ 58
>12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232
Length = 1035
Score = 29.1 bits (62), Expect = 7.4
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 379 GXGGXGGXXGGGXGGXXRGXGH 444
G GG GG GGG GG GH
Sbjct: 62 GGGGGGGGGGGGGGGRGGRGGH 83
>06_03_1211 -
28448429-28449295,28449825-28449860,28451010-28451135,
28452861-28453400
Length = 522
Score = 29.1 bits (62), Expect = 7.4
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +1
Query: 379 GXGGXGGXXGGGXGGXXRGXGHLG 450
G GG GG GGG GG RG +LG
Sbjct: 72 GVGGGGGG-GGGGGGGGRGRFYLG 94
>03_02_0765 + 11000724-11002496
Length = 590
Score = 28.7 bits (61), Expect = 9.8
Identities = 16/36 (44%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Frame = +1
Query: 379 GXGGXGGXXGGGX--GGXXRGXGHLGXXAXXGXXGK 480
G GG GG GGG GG G GH G GK
Sbjct: 47 GFGGGGGLGGGGGAGGGFGGGLGHGGGLGGGFGGGK 82
Score = 28.7 bits (61), Expect = 9.8
Identities = 16/36 (44%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Frame = +1
Query: 379 GXGGXGGXXGGGX--GGXXRGXGHLGXXAXXGXXGK 480
G GG GG GGG GG G GH G GK
Sbjct: 85 GLGGGGGLGGGGGAGGGFGGGLGHGGGLGGGFGGGK 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.142 0.461
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,600,198
Number of Sequences: 37544
Number of extensions: 132440
Number of successful extensions: 1517
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3759607596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
- SilkBase 1999-2023 -