Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_I05
         (1257 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    29   1.3  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    23   3.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   7.2  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    26   9.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   9.5  

>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 578 QK*QYSLFQFLIHLQLLYKYIFYDNFFFCNII 483
           QK Q S+ + LI  +L  KY+FY NF + + I
Sbjct: 495 QKEQKSVDKHLIRNKLCEKYLFYSNFIWISFI 526


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 23.4 bits (48), Expect(2) = 3.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 569 QYSLFQFLIHLQLLYKYIFYDNFFFCNIIP 480
           QYS+   +    L  KY+    F  CNIIP
Sbjct: 458 QYSVSDAVATYFLYMKYVHPFIFSLCNIIP 487



 Score = 22.2 bits (45), Expect(2) = 3.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 383 DNVTICSASCLCRCILSFCLCNKGVGLPSRKV 288
           D V       LC  +L+   C K + LP++ V
Sbjct: 491 DEVLRKGTGTLCETLLTVEACTKNIILPNKHV 522


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -1

Query: 1023 PXPXGGGXGXXXPXKXXPPPPPXXXXKKK 937
            P P     G   P +  PPPPP    K+K
Sbjct: 9    PPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 79  FLVFIFPFKYTSKQ*NQRMNNLTGNKILKTITGLR 183
           F +    FK    Q ++ + N+ GN   +T+TG R
Sbjct: 740 FFIAAVAFKIQMLQLSKNLTNIAGNSWARTLTGTR 774


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 999  PPPPPGXXGXXFXGXPXPXP 1058
            PPPPP   G    G P P P
Sbjct: 761  PPPPPPPPGVAGAGPPPPPP 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,106,241
Number of Sequences: 5004
Number of extensions: 48223
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 681602054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)